Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47183 * 2 1 4 4 N 1.46903 * 109.46726 * 185.16770 * 3 2 1 5 5 C 1.46907 * 110.99223 * 160.31905 * 4 3 2 6 6 C 1.50697 * 109.47052 * 288.39457 * 5 4 3 7 7 H 1.08004 * 119.99939 * 355.04938 * 6 5 4 8 8 C 1.37876 * 120.00370 * 175.05186 * 6 5 4 9 9 N 1.31508 * 120.00712 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 119.99516 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46593 * 90.00246 * 10 8 6 12 12 H 1.48501 * 109.47045 * 210.00141 * 10 8 6 13 13 H 1.48495 * 109.47148 * 330.00218 * 10 8 6 14 14 C 1.46897 * 111.00129 * 284.26631 * 4 3 2 15 15 C 1.53117 * 109.51832 * 175.00005 * 14 4 3 16 16 C 1.53039 * 109.27853 * 177.56155 * 15 14 4 17 17 N 1.46851 * 109.52245 * 300.82701 * 16 15 14 18 18 C 1.46906 * 110.99716 * 185.83634 * 17 16 15 19 19 C 1.52996 * 109.46999 * 59.99919 * 18 17 16 20 20 C 1.52997 * 109.47051 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.47064 * 299.99944 * 18 17 16 22 22 C 1.46842 * 111.19903 * 61.74258 * 17 16 15 23 23 C 1.53043 * 109.52074 * 298.25535 * 22 17 16 24 24 H 1.09008 * 109.46855 * 299.99625 * 1 2 3 25 25 H 1.08995 * 109.47600 * 59.99477 * 1 2 3 26 26 H 1.08998 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47118 * 240.00007 * 2 1 3 28 28 H 1.09004 * 109.47579 * 120.00371 * 2 1 3 29 29 H 1.08998 * 109.46666 * 65.17189 * 3 2 1 30 30 H 1.08993 * 109.47318 * 305.17285 * 3 2 1 31 31 H 1.08997 * 109.47223 * 48.39570 * 5 4 3 32 32 H 1.09000 * 109.46589 * 168.39710 * 5 4 3 33 33 H 0.96998 * 120.00355 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.56867 * 54.84792 * 14 4 3 35 35 H 1.09008 * 109.50135 * 57.62741 * 15 14 4 36 36 H 1.08996 * 109.50882 * 297.50742 * 15 14 4 37 37 H 1.09004 * 109.46257 * 60.83671 * 16 15 14 38 38 H 1.08997 * 109.46850 * 180.80945 * 16 15 14 39 39 H 1.08997 * 109.47198 * 60.00407 * 19 18 17 40 40 H 1.09008 * 109.47046 * 179.97438 * 19 18 17 41 41 H 1.08995 * 109.47674 * 299.99672 * 19 18 17 42 42 H 1.09008 * 109.47119 * 59.99863 * 20 18 17 43 43 H 1.08996 * 109.47454 * 179.97438 * 20 18 17 44 44 H 1.09002 * 109.47100 * 300.00116 * 20 18 17 45 45 H 1.08995 * 109.47099 * 59.99816 * 21 18 17 46 46 H 1.08996 * 109.47003 * 180.02562 * 21 18 17 47 47 H 1.08998 * 109.47054 * 300.00174 * 21 18 17 48 48 H 1.09001 * 109.46810 * 58.26984 * 22 17 16 49 49 H 1.09000 * 109.46512 * 178.24356 * 22 17 16 50 50 H 1.08999 * 109.50108 * 179.12599 * 23 22 17 51 51 H 1.09005 * 109.50226 * 299.24173 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4443 -0.1248 5 6 3.9906 2.7497 -0.5907 6 6 3.6272 2.9325 -2.0417 7 1 3.1599 2.1260 -2.5872 8 6 3.8913 4.1295 -2.6731 9 7 3.5747 4.2890 -3.9394 10 14 4.6990 5.5248 -1.7294 11 1 6.1748 5.4180 -1.8549 12 1 4.2476 6.8254 -2.2862 13 1 4.3166 5.4401 -0.2970 14 6 4.1407 1.0672 1.1441 15 6 5.6548 0.9585 0.9439 16 6 6.3187 0.6253 2.2820 17 7 6.0102 1.6778 3.2585 18 6 6.7434 1.4630 4.5132 19 6 8.2476 1.4785 4.2340 20 6 6.3975 2.5771 5.5031 21 6 6.3491 0.1101 5.1091 22 6 4.5650 1.7687 3.5024 23 6 3.8488 2.1361 2.2008 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7542 1.9289 0.9327 30 1 1.6030 1.9824 -0.8400 31 1 3.5314 3.5412 0.0014 32 1 5.0740 2.7942 -0.4791 33 1 3.7601 5.1312 -4.3834 34 1 3.7476 0.1072 1.4788 35 1 6.0418 1.9073 0.5721 36 1 5.8711 0.1694 0.2239 37 1 5.9415 -0.3302 2.6466 38 1 7.3983 0.5613 2.1459 39 1 8.5284 2.4423 3.8096 40 1 8.7916 1.3196 5.1651 41 1 8.4944 0.6850 3.5287 42 1 5.3257 2.5666 5.7021 43 1 6.9411 2.4176 6.4343 44 1 6.6786 3.5408 5.0784 45 1 6.5959 -0.6834 4.4037 46 1 6.8928 -0.0491 6.0403 47 1 5.2775 0.0990 5.3080 48 1 4.1960 0.8079 3.8612 49 1 4.3708 2.5353 4.2526 50 1 2.7747 2.1883 2.3787 51 1 4.2074 3.1034 1.8486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256573271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -19.745471 kcal Electronic energy + Delta-G solvation = -24438.913596 eV Core-core repulsion = 21372.056347 eV Total energy + Delta-G solvation = -3066.857248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11131 -39.06324 -35.68246 -34.91067 -33.58176 -32.07168 -30.94010 -29.26975 -28.20405 -28.18360 -26.39752 -24.60174 -23.74855 -22.90774 -21.93026 -20.14085 -19.56451 -18.98704 -17.38702 -16.65906 -16.28300 -16.07337 -15.76813 -15.42920 -15.23655 -15.06282 -14.86283 -14.64269 -14.52454 -14.33734 -14.05917 -13.80443 -13.44546 -13.02587 -12.91208 -12.83936 -12.76102 -12.67941 -12.46316 -12.41117 -12.29123 -12.05483 -11.95940 -11.94939 -11.84755 -11.76477 -11.56486 -11.49605 -11.32507 -11.12722 -10.93755 -10.72462 -9.11034 -8.84268 -8.27333 -6.28203 1.32582 1.32917 1.43965 2.33456 2.92921 3.06332 3.22772 3.82718 3.86593 3.98128 4.05577 4.08068 4.23235 4.28715 4.29574 4.33605 4.43273 4.50124 4.54827 4.64691 4.67090 4.72896 4.76007 4.77397 4.83302 4.87302 4.89372 4.93042 4.96908 5.00915 5.03370 5.04116 5.07590 5.15350 5.16484 5.23185 5.26369 5.30697 5.39375 5.41968 5.46162 5.50424 5.51754 5.63607 6.06178 6.25613 6.33954 6.50404 6.73736 6.79251 7.35069 8.89684 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.005695 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.127459 B = 4915.101368 C = 6249.029676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.536 5.536 5 C 0.176 3.824 6 C -0.508 4.508 7 H 0.035 0.965 8 C 0.011 3.989 9 N -0.948 5.948 10 Si 0.939 3.061 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.255 1.255 14 C 0.088 3.912 15 C -0.109 4.109 16 C 0.065 3.935 17 N -0.542 5.542 18 C 0.098 3.902 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.175 4.175 22 C 0.067 3.933 23 C -0.146 4.146 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.046 0.954 31 H -0.016 1.016 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.082 0.918 50 H 0.066 0.934 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.242 -8.326 21.968 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.068 4.068 4 N -0.258 5.258 5 C 0.049 3.951 6 C -0.547 4.547 7 H 0.054 0.946 8 C -0.186 4.186 9 N -0.590 5.590 10 Si 0.763 3.237 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.179 1.179 14 C -0.021 4.021 15 C -0.147 4.147 16 C -0.063 4.063 17 N -0.268 5.268 18 C 0.009 3.991 19 C -0.195 4.195 20 C -0.196 4.196 21 C -0.234 4.234 22 C -0.061 4.061 23 C -0.186 4.186 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.002 0.998 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.528 -8.106 21.260 23.199 hybrid contribution -0.334 0.833 0.246 0.931 sum 4.194 -7.273 21.507 23.087 Atomic orbital electron populations 1.21693 0.94606 1.02277 1.01596 1.21413 0.96122 0.95343 1.01640 1.22063 0.87873 0.97586 0.99237 1.62072 1.05783 1.30471 1.27501 1.19902 0.95253 0.86653 0.93274 1.21306 1.38850 0.98878 0.95632 0.94643 1.25747 0.96220 1.01057 0.95578 1.70043 1.50170 1.26644 1.12123 0.85833 0.79433 0.78625 0.79782 1.19186 1.20681 1.17903 1.21784 0.94868 0.97681 0.87740 1.21657 0.94237 1.01633 0.97206 1.22051 1.00635 0.92590 0.91007 1.62122 1.07323 1.46720 1.10592 1.21158 0.94507 0.94821 0.88564 1.21889 0.93570 1.01967 1.02120 1.21916 1.01693 0.97740 0.98299 1.22433 1.01763 0.97381 1.01808 1.21989 0.87346 1.00502 0.96253 1.22227 0.99873 0.99758 0.96727 0.92106 0.93892 0.91079 0.93144 0.91358 0.94700 0.93583 0.99847 0.95365 0.92561 0.89917 0.93214 0.91481 0.93753 0.89742 0.93009 0.90717 0.92477 0.92442 0.90685 0.92986 0.92542 0.90838 0.92711 0.93850 0.89987 0.91532 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.11 -3.33 5.96 30.59 0.18 -3.15 16 3 C 0.06 2.32 4.71 86.30 0.41 2.73 16 4 N -0.54 -22.34 4.37 -875.07 -3.83 -26.17 16 5 C 0.18 8.69 2.73 85.55 0.23 8.92 16 6 C -0.51 -30.23 8.83 25.60 0.23 -30.00 16 7 H 0.04 2.36 8.04 -2.91 -0.02 2.33 16 8 C 0.01 0.66 5.47 84.66 0.46 1.12 16 9 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 10 Si 0.94 45.90 27.57 68.60 1.89 47.79 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.25 -11.89 6.40 99.48 0.64 -11.25 16 14 C 0.09 2.89 2.21 44.99 0.10 2.99 16 15 C -0.11 -3.48 5.29 30.65 0.16 -3.32 16 16 C 0.07 1.59 4.65 86.33 0.40 1.99 16 17 N -0.54 -13.05 4.47 -846.81 -3.79 -16.84 16 18 C 0.10 1.82 0.71 3.53 0.00 1.82 16 19 C -0.14 -2.37 8.25 71.98 0.59 -1.78 16 20 C -0.14 -2.35 8.12 71.98 0.58 -1.76 16 21 C -0.18 -2.74 7.79 71.98 0.56 -2.18 16 22 C 0.07 1.61 4.67 86.33 0.40 2.02 16 23 C -0.15 -4.49 4.76 30.65 0.15 -4.34 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.85 7.03 -2.38 -0.02 1.84 16 29 H 0.03 1.24 5.95 -2.39 -0.01 1.23 16 30 H 0.05 2.12 7.09 -2.39 -0.02 2.10 16 31 H -0.02 -0.81 5.78 -2.39 -0.01 -0.83 16 32 H 0.03 1.41 5.32 -2.39 -0.01 1.40 16 33 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.08 2.47 6.84 -2.39 -0.02 2.45 16 35 H 0.05 1.87 6.03 -2.38 -0.01 1.85 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.04 0.98 6.63 -2.38 -0.02 0.97 16 38 H 0.08 1.92 6.01 -2.39 -0.01 1.91 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 0.98 6.28 -2.39 -0.02 0.96 16 42 H 0.06 0.96 6.22 -2.38 -0.01 0.94 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 0.92 6.54 -2.39 -0.02 0.90 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 0.88 6.63 -2.39 -0.02 0.87 16 48 H 0.04 0.94 6.71 -2.39 -0.02 0.93 16 49 H 0.08 1.83 5.90 -2.39 -0.01 1.81 16 50 H 0.07 1.97 6.37 -2.39 -0.02 1.95 16 51 H 0.04 1.67 6.63 -2.38 -0.02 1.65 16 Total: -1.00 -66.74 360.76 0.56 -66.18 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.80 Total: 17.34 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 5.18 Total: -27.95 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -7.32 Total: -103.36 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.89 Total: 47.79 kcal Total: -66.74 0.56 -66.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256573271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.433 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds