Wall clock time and date at job start Tue Mar 31 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 C 1.53003 * 109.46833 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47022 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99911 * 270.00103 * 5 4 3 7 7 H 1.07995 * 120.00535 * 141.81652 * 6 5 4 8 8 C 1.38812 * 119.99589 * 321.80752 * 6 5 4 9 9 N 1.31614 * 120.00448 * 339.21355 * 8 6 5 10 10 Si 1.86804 * 119.99635 * 159.21397 * 8 6 5 11 11 H 1.48510 * 109.46773 * 90.00415 * 10 8 6 12 12 H 1.48504 * 109.46995 * 209.99957 * 10 8 6 13 13 H 1.48493 * 109.47324 * 330.00472 * 10 8 6 14 14 C 1.46501 * 120.00245 * 89.99552 * 5 4 3 15 15 C 1.53118 * 109.52417 * 245.07217 * 14 5 4 16 16 C 1.53039 * 109.27598 * 182.43868 * 15 14 5 17 17 N 1.46848 * 109.52520 * 59.18296 * 16 15 14 18 18 C 1.46892 * 110.99993 * 174.15603 * 17 16 15 19 19 C 1.52999 * 109.47060 * 60.00465 * 18 17 16 20 20 C 1.53003 * 109.46891 * 179.97438 * 18 17 16 21 21 C 1.53003 * 109.47492 * 300.00024 * 18 17 16 22 22 C 1.46844 * 111.19867 * 298.25830 * 17 16 15 23 23 C 1.53046 * 109.52302 * 61.73748 * 22 17 16 24 24 H 1.09002 * 109.46942 * 299.99655 * 1 2 3 25 25 H 1.09001 * 109.47179 * 59.99592 * 1 2 3 26 26 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46589 * 240.00159 * 2 1 3 28 28 H 1.09001 * 109.47179 * 120.00408 * 2 1 3 29 29 H 1.08994 * 109.47217 * 60.00561 * 3 2 1 30 30 H 1.08994 * 109.46813 * 300.00041 * 3 2 1 31 31 H 1.08994 * 109.47352 * 59.99551 * 4 3 2 32 32 H 1.09001 * 109.46948 * 300.00098 * 4 3 2 33 33 H 0.97001 * 120.00296 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.57630 * 5.23561 * 14 5 4 35 35 H 1.09003 * 109.49695 * 62.50302 * 15 14 5 36 36 H 1.08989 * 109.50709 * 302.38130 * 15 14 5 37 37 H 1.08998 * 109.46494 * 299.16496 * 16 15 14 38 38 H 1.09005 * 109.45818 * 179.19823 * 16 15 14 39 39 H 1.09000 * 109.47492 * 59.99839 * 19 18 17 40 40 H 1.09004 * 109.47059 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.46935 * 299.99055 * 19 18 17 42 42 H 1.09005 * 109.46868 * 60.00758 * 20 18 17 43 43 H 1.09004 * 109.47083 * 180.02562 * 20 18 17 44 44 H 1.08992 * 109.47523 * 300.00356 * 20 18 17 45 45 H 1.08998 * 109.46596 * 60.00060 * 21 18 17 46 46 H 1.09005 * 109.46830 * 179.97438 * 21 18 17 47 47 H 1.08997 * 109.47229 * 299.99919 * 21 18 17 48 48 H 1.08991 * 109.46571 * 181.75638 * 22 17 16 49 49 H 1.09003 * 109.45969 * 301.72633 * 22 17 16 50 50 H 1.09002 * 109.49775 * 180.88184 * 23 22 17 51 51 H 1.09001 * 109.49864 * 60.76637 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2861 3.4698 -1.1857 7 1 4.0432 4.5174 -1.2851 8 6 4.8293 2.7783 -2.2598 9 7 5.4950 1.6616 -2.0547 10 14 4.6156 3.4329 -3.9963 11 1 5.7460 4.3375 -4.3269 12 1 4.5935 2.2980 -4.9538 13 1 3.3376 4.1834 -4.0885 14 6 4.3030 3.5135 1.2690 15 6 3.3301 4.6875 1.4090 16 6 3.6305 5.4406 2.7070 17 7 5.0151 5.9293 2.6817 18 6 5.2963 6.7747 3.8496 19 6 5.0861 5.9629 5.1293 20 6 6.7450 7.2633 3.7885 21 6 4.3513 7.9779 3.8478 22 6 5.9695 4.8167 2.5953 23 6 5.7388 4.0449 1.2939 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 5.8742 1.1782 -2.8053 34 1 4.1573 2.8189 2.0963 35 1 2.3074 4.3114 1.4348 36 1 3.4492 5.3620 0.5612 37 1 3.4979 4.7693 3.5554 38 1 2.9487 6.2857 2.8027 39 1 5.7594 5.1057 5.1306 40 1 5.2952 6.5901 5.9959 41 1 4.0541 5.6145 5.1731 42 1 6.8952 7.8416 2.8768 43 1 6.9538 7.8902 4.6553 44 1 7.4180 6.4059 3.7900 45 1 3.3194 7.6295 3.8916 46 1 4.5597 8.6050 4.7147 47 1 4.5011 8.5563 2.9361 48 1 6.9864 5.2085 2.6098 49 1 5.8258 4.1482 3.4442 50 1 6.4371 3.2098 1.2376 51 1 5.8959 4.7093 0.4442 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256575435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:11 Heat of formation + Delta-G solvation = 1.325237 kcal Electronic energy + Delta-G solvation = -24311.813408 eV Core-core repulsion = 21245.869854 eV Total energy + Delta-G solvation = -3065.943554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.49341 -36.70323 -34.71046 -33.25715 -31.16161 -30.50212 -29.32976 -27.34005 -27.28000 -27.11597 -24.45942 -23.07708 -22.07539 -21.02300 -19.97795 -19.35164 -18.43915 -16.29874 -15.92351 -15.01281 -14.53764 -14.43665 -14.20599 -14.00446 -13.87031 -13.61842 -13.35698 -13.29067 -12.74454 -12.59538 -12.27645 -12.06922 -11.89646 -11.76940 -11.71045 -11.45791 -11.28207 -11.07666 -10.93839 -10.88797 -10.78565 -10.65705 -10.47513 -10.41512 -10.31909 -10.16934 -10.06885 -9.80387 -9.56155 -9.36611 -9.17760 -8.35438 -7.84641 -6.41406 -5.67350 -3.25355 3.41068 3.48646 3.52255 4.17870 4.55633 4.89005 4.99194 5.23021 5.29134 5.41038 5.46389 5.52142 5.54916 5.60333 5.64664 5.69203 5.75857 5.82837 5.85311 5.88734 5.92210 5.94105 5.97643 6.09254 6.11800 6.18026 6.23199 6.29265 6.31231 6.37527 6.43532 6.50092 6.50814 6.52629 6.62385 6.70341 6.85578 6.91694 6.98823 6.99782 7.25829 7.36533 7.42976 7.60204 7.62257 7.82910 7.95001 8.64746 9.32003 9.94395 10.53530 11.31846 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.005304 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.352055 B = 5277.491020 C = 6432.037627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.148 3.852 5 N -0.580 5.580 6 C -0.245 4.245 7 H 0.059 0.941 8 C 0.012 3.988 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.178 3.822 15 C -0.123 4.123 16 C 0.057 3.943 17 N -0.522 5.522 18 C 0.100 3.900 19 C -0.180 4.180 20 C -0.140 4.140 21 C -0.138 4.138 22 C 0.054 3.946 23 C -0.113 4.113 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.017 0.983 33 H 0.252 0.748 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.023 0.977 50 H 0.059 0.941 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 5.519 11.768 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.022 3.978 5 N -0.299 5.299 6 C -0.375 4.375 7 H 0.076 0.924 8 C -0.188 4.188 9 N -0.532 5.532 10 Si 0.720 3.280 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.071 3.929 15 C -0.163 4.163 16 C -0.071 4.071 17 N -0.246 5.246 18 C 0.010 3.990 19 C -0.239 4.239 20 C -0.198 4.198 21 C -0.195 4.195 22 C -0.074 4.074 23 C -0.153 4.153 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.041 0.959 50 H 0.077 0.923 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.719 5.675 11.211 12.856 hybrid contribution -0.215 -0.260 -0.192 0.388 sum -2.934 5.416 11.019 12.623 Atomic orbital electron populations 1.21770 0.97106 1.00362 1.01291 1.21485 0.94558 0.98774 1.01178 1.22198 1.00554 0.93964 1.00555 1.20929 0.89183 0.86606 1.01078 1.43847 1.74308 1.11318 1.00415 1.18880 1.34975 0.95225 0.88464 0.92371 1.25139 0.96756 0.98057 0.98835 1.69995 1.34988 1.18350 1.29862 0.86503 0.78158 0.77998 0.85344 1.21406 1.21714 1.20461 1.20369 0.91899 0.91795 0.88870 1.22055 0.99350 0.98745 0.96170 1.22163 0.89354 0.97715 0.97864 1.62163 1.03177 1.20836 1.38457 1.21042 0.95778 0.93522 0.88661 1.22491 1.01970 1.00833 0.98577 1.21916 0.94968 1.01127 1.01758 1.21880 0.98958 0.97007 1.01703 1.22252 0.95649 0.91290 0.98165 1.21899 0.98699 0.98943 0.95739 0.93371 0.93090 0.93750 0.92406 0.93036 0.94245 0.92520 0.89044 0.96471 0.93827 0.94399 0.92811 0.91103 0.95678 0.91571 0.92482 0.92657 0.92473 0.91785 0.92808 0.92383 0.92578 0.92825 0.91830 0.91372 0.95851 0.92279 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.65 5.54 -26.73 -0.15 -2.80 16 4 C 0.15 3.44 5.28 -4.04 -0.02 3.42 16 5 N -0.58 -13.97 2.37 -165.53 -0.39 -14.36 16 6 C -0.25 -6.51 8.01 -15.06 -0.12 -6.64 16 7 H 0.06 1.58 7.03 -52.49 -0.37 1.21 16 8 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 9 N -0.89 -25.32 11.48 55.49 0.64 -24.68 16 10 Si 0.89 21.65 29.60 -169.99 -5.03 16.62 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.18 3.70 2.71 -67.81 -0.18 3.52 16 15 C -0.12 -2.30 5.45 -26.65 -0.15 -2.45 16 16 C 0.06 0.89 4.64 -3.83 -0.02 0.87 16 17 N -0.52 -8.02 4.47 -219.02 -0.98 -9.00 16 18 C 0.10 1.25 0.71 -131.60 -0.09 1.16 16 19 C -0.18 -2.08 7.78 37.16 0.29 -1.79 16 20 C -0.14 -1.62 8.12 37.16 0.30 -1.32 16 21 C -0.14 -1.56 8.25 37.16 0.31 -1.25 16 22 C 0.05 0.89 4.67 -3.83 -0.02 0.87 16 23 C -0.11 -2.30 5.30 -26.65 -0.14 -2.44 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 2.42 5.54 -51.93 -0.29 2.13 16 32 H 0.02 0.38 7.88 -51.93 -0.41 -0.02 16 33 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.04 0.78 7.77 -51.93 -0.40 0.38 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.48 7.12 -51.93 -0.37 1.11 16 37 H 0.03 0.38 6.63 -51.93 -0.34 0.04 16 38 H 0.07 0.95 6.01 -51.93 -0.31 0.64 16 39 H 0.06 0.69 6.63 -51.93 -0.34 0.35 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.68 6.22 -51.93 -0.32 0.36 16 45 H 0.06 0.63 6.28 -51.93 -0.33 0.31 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.05 5.90 -51.93 -0.31 0.74 16 49 H 0.02 0.37 6.71 -51.93 -0.35 0.02 16 50 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.08 1.74 7.47 -51.93 -0.39 1.35 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -27.27 372.54 -9.94 -37.21 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.92 Total: 1.16 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 0.13 Total: -12.57 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.73 Total: -48.04 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.27 -9.94 -37.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256575435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.538 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds