Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46937 * 2 1 4 4 C 1.52996 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.46800 * 185.16494 * 4 3 2 6 6 C 1.46898 * 110.99828 * 160.31927 * 5 4 3 7 7 C 1.50700 * 109.47149 * 288.40037 * 6 5 4 8 8 H 1.07998 * 119.99996 * 355.05196 * 7 6 5 9 9 C 1.37882 * 119.99751 * 175.05316 * 7 6 5 10 10 N 1.31521 * 119.99876 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00214 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46803 * 90.00380 * 11 9 7 13 13 H 1.48500 * 109.46965 * 210.00275 * 11 9 7 14 14 H 1.48497 * 109.47111 * 330.00307 * 11 9 7 15 15 C 1.46894 * 111.00099 * 284.27122 * 5 4 3 16 16 C 1.53120 * 109.52429 * 175.00152 * 15 5 4 17 17 C 1.53031 * 109.27786 * 177.56469 * 16 15 5 18 18 N 1.46849 * 109.52298 * 300.81774 * 17 16 15 19 19 C 1.46900 * 111.00140 * 185.84276 * 18 17 16 20 20 C 1.52997 * 109.47129 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47222 * 60.00003 * 19 18 17 22 22 C 1.46845 * 111.19762 * 61.74636 * 18 17 16 23 23 C 1.53035 * 109.52109 * 298.25678 * 22 18 17 24 24 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47182 * 299.99368 * 1 2 3 26 26 H 1.08997 * 109.47543 * 59.99939 * 1 2 3 27 27 H 1.09004 * 109.47641 * 240.00372 * 2 1 3 28 28 H 1.08997 * 109.47543 * 120.00061 * 2 1 3 29 29 H 1.09003 * 109.46668 * 60.00317 * 3 2 1 30 30 H 1.08997 * 109.47054 * 300.00360 * 3 2 1 31 31 H 1.08998 * 109.47326 * 65.16624 * 4 3 2 32 32 H 1.09001 * 109.47142 * 305.16251 * 4 3 2 33 33 H 1.08999 * 109.47683 * 48.39848 * 6 5 4 34 34 H 1.09002 * 109.47021 * 168.40232 * 6 5 4 35 35 H 0.96993 * 120.00080 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.52198 * 54.87334 * 15 5 4 37 37 H 1.08994 * 109.50038 * 57.61815 * 16 15 5 38 38 H 1.09009 * 109.53371 * 297.51844 * 16 15 5 39 39 H 1.09003 * 109.46406 * 180.80228 * 17 16 15 40 40 H 1.09002 * 109.46088 * 60.83212 * 17 16 15 41 41 H 1.09003 * 109.47427 * 299.99925 * 19 18 17 42 42 H 1.09004 * 109.47315 * 59.99905 * 20 19 18 43 43 H 1.09003 * 109.47459 * 300.00087 * 20 19 18 44 44 H 1.08998 * 109.47239 * 179.97438 * 20 19 18 45 45 H 1.09003 * 109.46898 * 60.00200 * 21 19 18 46 46 H 1.08998 * 109.46953 * 180.02562 * 21 19 18 47 47 H 1.08998 * 109.47136 * 300.00153 * 21 19 18 48 48 H 1.08996 * 109.46671 * 58.27028 * 22 18 17 49 49 H 1.09000 * 109.46098 * 178.24666 * 22 18 17 50 50 H 1.09000 * 109.50913 * 299.23715 * 23 22 18 51 51 H 1.09001 * 109.50438 * 179.12234 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8221 0.1253 6 6 5.4522 2.8462 0.5918 7 6 5.5030 2.4428 2.0430 8 1 4.5866 2.2711 2.5881 9 6 6.7194 2.2931 2.6747 10 7 6.7637 1.9406 3.9410 11 14 8.3044 2.5896 1.7317 12 1 8.6954 4.0166 1.8572 13 1 9.3799 1.7306 2.2890 14 1 8.0977 2.2571 0.2992 15 6 3.9167 3.5481 -1.1437 16 6 4.3189 5.0119 -0.9438 17 6 4.2264 5.7485 -2.2820 18 7 5.1162 5.1067 -3.2580 19 6 5.1586 5.8692 -4.5129 20 6 6.0941 5.1715 -5.5022 21 6 5.6745 7.2824 -4.2338 22 6 4.7204 3.7138 -3.5018 23 6 4.8276 2.9164 -2.2000 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 3.9337 1.0109 -0.9317 32 1 3.9329 0.8509 0.8410 33 1 6.0458 2.1494 0.0001 34 1 5.8553 3.8528 0.4802 35 1 7.6194 1.8349 4.3853 36 1 2.8804 3.4974 -1.4777 37 1 5.3421 5.0605 -0.5715 38 1 3.6470 5.4795 -0.2239 39 1 4.5258 6.7878 -2.1460 40 1 3.1999 5.7112 -2.6468 41 1 4.1564 5.9256 -4.9379 42 1 5.7271 4.1646 -5.7011 43 1 7.0963 5.1155 -5.0771 44 1 6.1253 5.7370 -6.4335 45 1 6.6767 7.2260 -3.8089 46 1 5.7055 7.8483 -5.1649 47 1 5.0084 7.7797 -3.5288 48 1 3.6917 3.6860 -3.8609 49 1 5.3788 3.2751 -4.2516 50 1 5.8589 2.9320 -1.8474 51 1 4.5189 1.8862 -2.3777 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257220734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -8.411201 kcal Electronic energy + Delta-G solvation = -24049.546548 eV Core-core repulsion = 20983.180791 eV Total energy + Delta-G solvation = -3066.365758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.61222 -37.37102 -34.78520 -33.42791 -32.22475 -30.92229 -29.65005 -28.86477 -27.27692 -26.42800 -23.64196 -22.76398 -22.36322 -21.04852 -20.57165 -19.99238 -18.44810 -16.89849 -16.43238 -15.19240 -15.05995 -14.84178 -14.52893 -14.28826 -13.95456 -13.79111 -13.63812 -13.32875 -12.96086 -12.80483 -12.64625 -12.43825 -12.26938 -12.16826 -12.08161 -11.70513 -11.56059 -11.23129 -11.17824 -10.95849 -10.91834 -10.86286 -10.75242 -10.56247 -10.39697 -10.20206 -10.01977 -9.99532 -9.75790 -9.60867 -9.16384 -8.49010 -8.20871 -7.20702 -5.99232 -3.95059 3.33116 3.40275 3.43690 3.89343 4.47596 4.67840 4.80642 4.87087 5.07189 5.21549 5.22931 5.24581 5.29759 5.32919 5.41298 5.44583 5.47845 5.51602 5.60275 5.66602 5.71079 5.72235 5.76664 5.82994 5.89316 5.92283 5.96499 6.05545 6.11390 6.13648 6.14188 6.16462 6.21249 6.29797 6.38440 6.39438 6.51467 6.61522 6.73584 6.76332 6.87377 7.02930 7.10652 7.22718 7.24441 7.72994 8.01801 8.17802 8.74979 9.11751 9.63815 11.14114 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.006320 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.367817 B = 4429.400152 C = 6509.566963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.110 4.110 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.158 3.842 7 C -0.504 4.504 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.903 5.903 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.086 3.914 16 C -0.111 4.111 17 C 0.057 3.943 18 N -0.533 5.533 19 C 0.077 3.923 20 C -0.148 4.148 21 C -0.146 4.146 22 C 0.061 3.939 23 C -0.153 4.153 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.086 0.914 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 4.454 -17.253 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.070 4.070 5 N -0.242 5.242 6 C 0.032 3.968 7 C -0.542 4.542 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.542 5.542 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.024 4.024 16 C -0.149 4.149 17 C -0.071 4.071 18 N -0.259 5.259 19 C -0.032 4.032 20 C -0.205 4.205 21 C -0.204 4.204 22 C -0.067 4.067 23 C -0.192 4.192 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.008 0.992 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.508 4.650 -16.530 18.364 hybrid contribution 0.647 -0.303 -1.352 1.529 sum -5.862 4.347 -17.882 19.314 Atomic orbital electron populations 1.21752 0.96426 1.00925 1.01519 1.21499 0.95224 0.97693 1.01801 1.21569 0.96139 0.95445 1.01683 1.22075 0.93881 0.90637 1.00435 1.62140 1.23777 1.13624 1.24617 1.20265 0.84190 0.96176 0.96207 1.21080 0.94351 1.45278 0.93500 0.90246 1.24891 0.98687 0.95025 0.94724 1.69900 1.25557 1.48538 1.10233 0.86932 0.83935 0.78538 0.80812 1.20195 1.21395 1.19129 1.21707 0.97519 0.93925 0.89226 1.21698 1.03416 0.94541 0.95232 1.22159 0.93565 0.98543 0.92848 1.61979 1.52192 1.01941 1.09809 1.21567 0.97556 0.94037 0.90005 1.21924 1.00409 1.00216 0.97972 1.21894 1.02224 0.94995 1.01260 1.22067 0.97999 0.88679 0.98003 1.22327 1.02577 0.98702 0.95596 0.93294 0.92744 0.93257 0.92714 0.91776 0.91311 0.93326 0.95986 0.89590 0.99165 0.95268 0.92816 0.91580 0.90320 0.90873 0.90556 0.95476 0.94742 0.92539 0.91686 0.92518 0.91671 0.92573 0.92450 0.95540 0.90884 0.90627 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.11 -1.74 5.24 -26.73 -0.14 -1.88 16 4 C 0.06 1.09 4.71 -3.82 -0.02 1.07 16 5 N -0.52 -10.61 4.37 -227.94 -1.00 -11.61 16 6 C 0.16 3.78 2.73 -4.98 -0.01 3.77 16 7 C -0.50 -14.28 8.83 -34.44 -0.30 -14.59 16 8 H 0.08 2.47 8.04 -52.49 -0.42 2.05 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 11 Si 0.87 21.82 27.57 -169.99 -4.69 17.14 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.27 -6.48 6.40 56.52 0.36 -6.12 16 15 C 0.09 1.45 2.21 -67.59 -0.15 1.30 16 16 C -0.11 -1.81 5.29 -26.65 -0.14 -1.95 16 17 C 0.06 0.77 5.22 -3.84 -0.02 0.75 16 18 N -0.53 -7.18 4.52 -226.69 -1.03 -8.21 16 19 C 0.08 0.84 2.68 -67.71 -0.18 0.66 16 20 C -0.15 -1.46 8.84 37.16 0.33 -1.13 16 21 C -0.15 -1.45 8.97 37.16 0.33 -1.12 16 22 C 0.06 0.82 5.13 -3.84 -0.02 0.80 16 23 C -0.15 -2.45 4.76 -26.65 -0.13 -2.57 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.72 7.03 -51.93 -0.37 0.35 16 31 H 0.02 0.39 5.95 -51.93 -0.31 0.09 16 32 H 0.09 1.86 7.09 -51.93 -0.37 1.50 16 33 H -0.01 -0.23 5.78 -51.93 -0.30 -0.53 16 34 H 0.03 0.72 5.32 -51.93 -0.28 0.44 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.07 1.07 6.84 -51.93 -0.35 0.71 16 37 H 0.08 1.47 6.03 -51.93 -0.31 1.16 16 38 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.08 0.95 6.01 -51.93 -0.31 0.64 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.55 6.22 -51.93 -0.32 0.23 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.56 6.28 -51.93 -0.33 0.24 16 48 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.92 5.90 -51.93 -0.31 0.61 16 50 H 0.08 1.41 6.63 -51.93 -0.34 1.07 16 51 H 0.06 1.00 6.37 -51.93 -0.33 0.67 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -29.67 368.74 -10.46 -40.14 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.74 Total: 0.28 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.34 Total: -16.23 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -1.25 Total: -46.88 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.69 Total: 17.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.67 -10.46 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257220734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.726 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds