Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 N 1.46897 * 109.47090 * 181.58520 * 3 2 1 5 5 C 1.46895 * 111.00229 * 295.15621 * 4 3 2 6 6 C 1.50707 * 109.47035 * 296.51507 * 5 4 3 7 7 H 1.08004 * 119.99462 * 354.52866 * 6 5 4 8 8 C 1.37872 * 120.00258 * 174.52720 * 6 5 4 9 9 N 1.31519 * 119.99953 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00226 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46828 * 89.99718 * 10 8 6 12 12 H 1.48495 * 109.47026 * 209.99876 * 10 8 6 13 13 H 1.48499 * 109.46942 * 329.99889 * 10 8 6 14 14 C 1.46905 * 110.99708 * 59.10775 * 4 3 2 15 15 C 1.53119 * 109.52116 * 179.97438 * 14 4 3 16 16 C 1.53031 * 109.27733 * 182.37942 * 15 14 4 17 17 N 1.46845 * 109.52157 * 59.18369 * 16 15 14 18 18 C 1.46894 * 111.00357 * 174.15628 * 17 16 15 19 19 C 1.53008 * 109.46844 * 176.14057 * 18 17 16 20 20 C 1.52995 * 109.47281 * 62.00545 * 19 18 17 21 21 C 1.53005 * 109.46779 * 182.00395 * 19 18 17 22 22 C 1.46854 * 111.19390 * 298.24459 * 17 16 15 23 23 C 1.53032 * 109.51612 * 61.75351 * 22 17 16 24 24 H 1.08994 * 109.46943 * 299.99727 * 1 2 3 25 25 H 1.08998 * 109.46927 * 60.00287 * 1 2 3 26 26 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46935 * 239.99796 * 2 1 3 28 28 H 1.09003 * 109.46918 * 120.00189 * 2 1 3 29 29 H 1.08998 * 109.46776 * 61.59029 * 3 2 1 30 30 H 1.08996 * 109.46950 * 301.59071 * 3 2 1 31 31 H 1.08997 * 109.47443 * 56.51604 * 5 4 3 32 32 H 1.09000 * 109.47250 * 176.52333 * 5 4 3 33 33 H 0.96994 * 120.00101 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.52191 * 300.12424 * 14 4 3 35 35 H 1.08997 * 109.50652 * 62.43345 * 15 14 4 36 36 H 1.09004 * 109.50336 * 302.31518 * 15 14 4 37 37 H 1.09004 * 109.46547 * 179.19284 * 16 15 14 38 38 H 1.09000 * 109.46464 * 299.16703 * 16 15 14 39 39 H 1.08999 * 109.47285 * 296.13349 * 18 17 16 40 40 H 1.08994 * 109.47465 * 56.14613 * 18 17 16 41 41 H 1.09000 * 109.47190 * 302.00121 * 19 18 17 42 42 H 1.08999 * 109.47292 * 180.02562 * 20 19 18 43 43 H 1.09007 * 109.47091 * 299.99607 * 20 19 18 44 44 H 1.09000 * 109.47354 * 59.99677 * 20 19 18 45 45 H 1.09002 * 109.47122 * 60.00040 * 21 19 18 46 46 H 1.08999 * 109.46637 * 179.97438 * 21 19 18 47 47 H 1.09000 * 109.47035 * 299.99821 * 21 19 18 48 48 H 1.09000 * 109.47069 * 301.73644 * 22 17 16 49 49 H 1.08999 * 109.45185 * 181.76037 * 22 17 16 50 50 H 1.09000 * 109.50568 * 180.87672 * 23 22 17 51 51 H 1.09001 * 109.50483 * 60.75551 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5085 1.4426 -0.0383 5 6 4.0671 0.8483 1.1834 6 6 3.6858 1.6923 2.3723 7 1 3.1646 2.6269 2.2261 8 6 4.0022 1.2714 3.6465 9 7 4.6364 0.1330 3.8245 10 14 3.5289 2.3171 5.1202 11 1 2.1776 1.9229 5.5933 12 1 4.5151 2.1105 6.2110 13 1 3.5177 3.7493 4.7277 14 6 4.0039 0.7494 -1.2350 15 6 5.5350 0.7700 -1.2413 16 6 6.0441 0.0991 -2.5189 17 7 5.5224 0.8146 -3.6903 18 6 6.1008 0.2842 -4.9320 19 6 5.4634 0.9870 -6.1324 20 6 5.7757 2.4835 -6.0722 21 6 6.0294 0.3995 -7.4269 22 6 4.0552 0.7675 -3.7312 23 6 3.4866 1.4584 -2.4897 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7002 1.9480 0.9039 30 1 1.6536 1.9645 -0.8754 31 1 3.6714 -0.1592 1.3111 32 1 5.1532 0.8046 1.1024 33 1 4.8594 -0.1629 4.7209 34 1 3.6532 -0.2827 -1.2295 35 1 5.9098 0.2295 -0.3721 36 1 5.8852 1.8017 -1.2077 37 1 7.1337 0.1249 -2.5334 38 1 5.7050 -0.9365 -2.5452 39 1 7.1763 0.4611 -4.9365 40 1 5.9084 -0.7869 -4.9939 41 1 4.3836 0.8398 -6.1084 42 1 5.3213 2.9842 -6.9271 43 1 5.3724 2.9020 -5.1500 44 1 6.8555 2.6306 -6.0963 45 1 5.8069 -0.6667 -7.4698 46 1 5.5750 0.8999 -8.2820 47 1 7.1092 0.5466 -7.4509 48 1 3.7255 -0.2713 -3.7517 49 1 3.7003 1.2789 -4.6260 50 1 2.3980 1.4096 -2.5125 51 1 3.8046 2.5009 -2.4757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258014726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -12.872732 kcal Electronic energy + Delta-G solvation = -23942.022141 eV Core-core repulsion = 20875.462917 eV Total energy + Delta-G solvation = -3066.559224 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47261 -37.48595 -35.15702 -32.82785 -32.37327 -30.80328 -30.24138 -27.22437 -27.02026 -25.93733 -24.43725 -23.16817 -22.17456 -21.76778 -20.37000 -19.50816 -18.46150 -16.48661 -15.98534 -15.27413 -14.92865 -14.91702 -14.63884 -14.42670 -14.12418 -13.63818 -13.43306 -13.40329 -12.91742 -12.64133 -12.48311 -12.35062 -12.21008 -12.06622 -11.80235 -11.42572 -11.29606 -11.19437 -11.03309 -10.98156 -10.84966 -10.81066 -10.75855 -10.63618 -10.56651 -10.39955 -10.04662 -9.98002 -9.72231 -9.35189 -9.06964 -8.37311 -8.15459 -7.04915 -5.98526 -3.98547 3.33601 3.40081 3.44597 3.99286 4.45701 4.66271 4.81543 4.92353 5.01718 5.18541 5.23885 5.36857 5.38295 5.45079 5.51982 5.54856 5.55244 5.58098 5.63537 5.64725 5.77309 5.78803 5.82601 5.87265 5.91837 5.98831 6.01521 6.05879 6.09343 6.19657 6.21871 6.31005 6.35150 6.40238 6.44416 6.50715 6.53300 6.69638 6.80700 6.91350 7.02170 7.25749 7.27554 7.43084 7.50805 7.87239 8.18468 8.29906 8.65460 9.09858 9.65177 11.12193 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.003902 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.796526 B = 7174.211463 C = 7803.177640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.162 4.162 3 C 0.066 3.934 4 N -0.531 5.531 5 C 0.187 3.813 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.085 3.915 15 C -0.109 4.109 16 C 0.060 3.940 17 N -0.533 5.533 18 C 0.060 3.940 19 C -0.100 4.100 20 C -0.139 4.139 21 C -0.146 4.146 22 C 0.054 3.946 23 C -0.107 4.107 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.052 0.948 31 H -0.003 1.003 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.025 0.975 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -0.569 -18.630 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C -0.062 4.062 4 N -0.253 5.253 5 C 0.062 3.938 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.025 4.025 15 C -0.147 4.147 16 C -0.068 4.068 17 N -0.257 5.257 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.196 4.196 21 C -0.204 4.204 22 C -0.074 4.074 23 C -0.145 4.145 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.045 0.310 -18.447 18.450 hybrid contribution -0.706 -1.404 0.921 1.821 sum -0.751 -1.094 -17.525 17.576 Atomic orbital electron populations 1.21656 0.96622 1.00566 1.01183 1.22160 0.95391 1.00643 1.01898 1.22060 0.88641 0.94163 1.01382 1.62368 1.06099 1.54195 1.02668 1.19812 0.95280 0.93461 0.85278 1.21176 1.36626 1.06131 0.90196 0.92015 1.24964 0.95499 0.95170 0.98953 1.69956 1.41038 1.20974 1.21996 0.86562 0.78049 0.80854 0.82353 1.20862 1.21356 1.19789 1.21549 0.94565 0.95090 0.91251 1.21687 0.95264 1.02226 0.95558 1.22101 0.99368 0.94860 0.90472 1.61988 1.06539 1.55404 1.01801 1.22162 0.99439 0.95979 0.89244 1.21249 1.00279 0.96431 0.93883 1.21730 1.01355 0.94603 1.01911 1.21819 1.01087 1.00450 0.97038 1.22184 0.87526 0.98578 0.99103 1.21649 0.99184 1.00900 0.92812 0.92735 0.93551 0.93762 0.93184 0.90952 0.90109 0.92958 0.98503 0.95069 0.93070 0.95461 0.90746 0.90482 0.91069 0.95497 0.90913 0.95462 0.91051 0.93681 0.91188 0.93042 0.93019 0.92653 0.92670 0.95693 0.90566 0.91996 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.16 -2.93 5.26 -26.73 -0.14 -3.07 16 3 C 0.07 1.28 4.77 -3.82 -0.02 1.26 16 4 N -0.53 -11.24 4.59 -227.94 -1.05 -12.29 16 5 C 0.19 4.76 4.23 -4.98 -0.02 4.73 16 6 C -0.50 -13.98 8.30 -34.44 -0.29 -14.26 16 7 H 0.06 1.72 7.17 -52.48 -0.38 1.34 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.08 1.51 1.59 -67.59 -0.11 1.41 16 15 C -0.11 -1.90 4.95 -26.65 -0.13 -2.03 16 16 C 0.06 0.86 5.46 -3.84 -0.02 0.84 16 17 N -0.53 -6.95 4.09 -234.68 -0.96 -7.91 16 18 C 0.06 0.65 4.55 -3.82 -0.02 0.63 16 19 C -0.10 -0.94 2.43 -90.62 -0.22 -1.16 16 20 C -0.14 -1.34 8.98 37.15 0.33 -1.01 16 21 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 22 C 0.05 0.70 4.96 -3.83 -0.02 0.68 16 23 C -0.11 -1.62 5.07 -26.65 -0.14 -1.75 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.87 6.30 -51.93 -0.33 0.54 16 28 H 0.07 1.55 6.52 -51.93 -0.34 1.21 16 29 H 0.08 1.73 6.67 -51.93 -0.35 1.38 16 30 H 0.05 0.90 6.42 -51.93 -0.33 0.57 16 31 H 0.00 -0.08 6.31 -51.93 -0.33 -0.40 16 32 H 0.03 0.85 5.89 -51.93 -0.31 0.54 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.03 0.52 6.25 -51.93 -0.32 0.20 16 35 H 0.07 1.44 6.34 -51.93 -0.33 1.11 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.70 6.07 -51.93 -0.32 0.38 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.79 7.55 -51.93 -0.39 0.40 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.88 5.69 -51.93 -0.30 0.59 16 50 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 51 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -28.46 372.10 -10.68 -39.15 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -9.83 Total: -0.51 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.17 Total: -14.86 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -1.27 Total: -46.08 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.46 -10.68 -39.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258014726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.275 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds