Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 C 1.52996 * 109.47488 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47363 * 179.97438 * 4 3 2 6 6 C 1.36929 * 120.00075 * 270.00295 * 5 4 3 7 7 H 1.07998 * 120.00630 * 143.27875 * 6 5 4 8 8 C 1.38817 * 119.99810 * 323.27227 * 6 5 4 9 9 N 1.31617 * 120.00152 * 337.46152 * 8 6 5 10 10 Si 1.86804 * 119.99838 * 157.45930 * 8 6 5 11 11 H 1.48497 * 109.47176 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46960 * 120.00243 * 10 8 6 13 13 H 1.48501 * 109.47050 * 240.00153 * 10 8 6 14 14 C 1.46501 * 119.99815 * 90.00175 * 5 4 3 15 15 C 1.53122 * 109.52099 * 245.13004 * 14 5 4 16 16 C 1.53038 * 109.27997 * 182.37672 * 15 14 5 17 17 N 1.46857 * 109.51273 * 59.18012 * 16 15 14 18 18 C 1.46890 * 110.99892 * 174.15509 * 17 16 15 19 19 C 1.53005 * 109.47421 * 295.55141 * 18 17 16 20 20 C 1.52998 * 109.47320 * 176.25196 * 19 18 17 21 21 C 1.52991 * 109.47323 * 296.25612 * 19 18 17 22 22 C 1.46845 * 111.19721 * 298.24704 * 17 16 15 23 23 C 1.53029 * 109.51751 * 61.75656 * 22 17 16 24 24 H 1.08998 * 109.46899 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46859 * 300.00006 * 1 2 3 26 26 H 1.08998 * 109.46960 * 60.00135 * 1 2 3 27 27 H 1.09000 * 109.47316 * 240.00239 * 2 1 3 28 28 H 1.08998 * 109.46960 * 119.99865 * 2 1 3 29 29 H 1.09000 * 109.46789 * 59.99917 * 3 2 1 30 30 H 1.09003 * 109.47227 * 300.00236 * 3 2 1 31 31 H 1.09000 * 109.47164 * 60.00159 * 4 3 2 32 32 H 1.09003 * 109.47089 * 300.00332 * 4 3 2 33 33 H 0.97000 * 120.00172 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.52597 * 5.25317 * 14 5 4 35 35 H 1.08993 * 109.50594 * 62.43503 * 15 14 5 36 36 H 1.09004 * 109.50040 * 302.31766 * 15 14 5 37 37 H 1.08996 * 109.46484 * 179.18733 * 16 15 14 38 38 H 1.09000 * 109.46239 * 299.17828 * 16 15 14 39 39 H 1.09006 * 109.47479 * 55.55405 * 18 17 16 40 40 H 1.08997 * 109.47543 * 175.55416 * 18 17 16 41 41 H 1.09000 * 109.46819 * 56.25778 * 19 18 17 42 42 H 1.08999 * 109.47109 * 60.00167 * 20 19 18 43 43 H 1.08996 * 109.47154 * 180.02562 * 20 19 18 44 44 H 1.09007 * 109.47152 * 300.00400 * 20 19 18 45 45 H 1.09003 * 109.46987 * 304.86463 * 21 19 18 46 46 H 1.09000 * 109.47426 * 64.86075 * 21 19 18 47 47 H 1.08999 * 109.47359 * 184.86735 * 21 19 18 48 48 H 1.09004 * 109.46951 * 301.73485 * 22 17 16 49 49 H 1.09003 * 109.44915 * 181.76424 * 22 17 16 50 50 H 1.09002 * 109.50281 * 180.87312 * 23 22 17 51 51 H 1.09003 * 109.50310 * 60.75723 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2870 3.4686 -1.1861 7 1 4.0662 4.5216 -1.2797 8 6 4.8027 2.7688 -2.2683 9 7 5.4756 1.6549 -2.0715 10 14 4.5418 3.4081 -4.0041 11 1 3.7596 4.6694 -3.9547 12 1 5.8588 3.6674 -4.6393 13 1 3.8000 2.3958 -4.7981 14 6 4.3020 3.5151 1.2685 15 6 3.3279 4.6884 1.4071 16 6 3.6261 5.4421 2.7052 17 7 5.0104 5.9319 2.6811 18 6 5.2898 6.7779 3.8489 19 6 4.4213 8.0360 3.7869 20 6 4.6433 8.8719 5.0490 21 6 4.8039 8.8598 2.5558 22 6 5.9657 4.8199 2.5964 23 6 5.7373 4.0477 1.2951 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9338 0.9287 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.8357 1.1656 -2.8278 34 1 4.1557 2.8207 2.0958 35 1 2.3055 4.3116 1.4317 36 1 3.4475 5.3627 0.5590 37 1 2.9437 6.2867 2.7998 38 1 3.4932 4.7708 3.5536 39 1 5.0637 6.2250 4.7607 40 1 6.3420 7.0625 3.8481 41 1 3.3716 7.7499 3.7207 42 1 5.6930 9.1580 5.1152 43 1 4.0242 9.7679 5.0049 44 1 4.3706 8.2850 5.9261 45 1 5.8728 9.0725 2.5788 46 1 4.5649 8.2970 1.6534 47 1 4.2469 9.7967 2.5579 48 1 5.8216 4.1516 3.4454 49 1 6.9823 5.2127 2.6119 50 1 6.4362 3.2130 1.2397 51 1 5.8948 4.7119 0.4453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258017382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -9.727751 kcal Electronic energy + Delta-G solvation = -23919.802071 eV Core-core repulsion = 20853.379223 eV Total energy + Delta-G solvation = -3066.422847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.91699 -36.59546 -35.08637 -33.65134 -31.80654 -30.19906 -30.04355 -27.66891 -27.04694 -25.53797 -24.14437 -22.70339 -22.35243 -20.82078 -20.00112 -19.57048 -19.04460 -16.35702 -15.76405 -15.07923 -14.86093 -14.58573 -14.47632 -14.00610 -13.83373 -13.47063 -13.38186 -13.21468 -12.75905 -12.64017 -12.26530 -12.18470 -11.98816 -11.82090 -11.73991 -11.45375 -11.13826 -11.06498 -10.90636 -10.84972 -10.67880 -10.57984 -10.44951 -10.44088 -10.40931 -10.15764 -10.08156 -9.79929 -9.62194 -9.37130 -9.20960 -8.36132 -7.91481 -6.45245 -5.68698 -3.24212 3.40384 3.49600 3.52519 4.21582 4.55247 4.83982 4.99355 5.20340 5.25916 5.40245 5.47839 5.50696 5.54513 5.59110 5.63194 5.68943 5.72518 5.75229 5.78590 5.86281 5.91442 5.93378 6.04538 6.09238 6.14921 6.17016 6.23098 6.30325 6.34647 6.36631 6.45548 6.47269 6.50878 6.55004 6.60440 6.68895 6.83112 6.88234 6.97614 6.98225 7.23261 7.35153 7.39296 7.54444 7.57260 7.82121 7.94402 8.62471 9.30420 9.93643 10.51911 11.30733 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.004827 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.173852 B = 5798.755360 C = 6843.691525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.147 3.853 5 N -0.581 5.581 6 C -0.245 4.245 7 H 0.060 0.940 8 C 0.011 3.989 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.177 3.823 15 C -0.123 4.123 16 C 0.059 3.941 17 N -0.532 5.532 18 C 0.060 3.940 19 C -0.095 4.095 20 C -0.146 4.146 21 C -0.136 4.136 22 C 0.060 3.940 23 C -0.114 4.114 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.017 0.983 33 H 0.251 0.749 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.021 0.979 49 H 0.063 0.937 50 H 0.059 0.941 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 6.543 11.382 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.172 4.172 4 C 0.021 3.979 5 N -0.299 5.299 6 C -0.375 4.375 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.531 5.531 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.219 1.219 13 H -0.217 1.217 14 C 0.070 3.930 15 C -0.163 4.163 16 C -0.069 4.069 17 N -0.256 5.256 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.204 4.204 21 C -0.193 4.193 22 C -0.068 4.068 23 C -0.153 4.153 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.039 0.961 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.349 6.700 10.833 13.170 hybrid contribution -0.210 -0.254 -0.181 0.376 sum -3.559 6.446 10.652 12.949 Atomic orbital electron populations 1.21769 0.97094 1.00374 1.01293 1.21484 0.94570 0.98762 1.01187 1.22191 1.00504 0.93984 1.00559 1.20945 0.89258 0.86549 1.01159 1.43885 1.74237 1.11367 1.00446 1.18938 1.35840 0.94667 0.88011 0.92211 1.25090 0.96915 0.98123 0.98739 1.70027 1.35074 1.18445 1.29533 0.86443 0.77531 0.78490 0.85652 1.20158 1.21861 1.21665 1.20371 0.91879 0.91833 0.88924 1.22052 0.99403 0.98730 0.96107 1.22143 0.89311 0.97576 0.97872 1.61911 1.03277 1.20800 1.39657 1.22142 0.99646 0.93652 0.91333 1.21155 0.99968 0.94958 0.95312 1.21823 1.01577 0.99644 0.97322 1.21691 1.00636 0.98579 0.98429 1.22147 0.95097 0.91242 0.98292 1.21895 0.98760 0.98980 0.95661 0.93742 0.93362 0.93089 0.92402 0.93026 0.94238 0.92514 0.88963 0.96433 0.93881 0.94336 0.92750 0.91046 0.91574 0.96044 0.95684 0.91256 0.91216 0.92804 0.92749 0.93112 0.93246 0.91223 0.93863 0.96074 0.91858 0.92184 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 4 C 0.15 3.40 5.28 -4.04 -0.02 3.38 16 5 N -0.58 -13.93 2.38 -165.53 -0.39 -14.32 16 6 C -0.24 -6.46 8.02 -15.06 -0.12 -6.58 16 7 H 0.06 1.62 7.04 -52.49 -0.37 1.25 16 8 C 0.01 0.30 4.93 -17.43 -0.09 0.21 16 9 N -0.89 -25.21 11.48 55.49 0.64 -24.57 16 10 Si 0.89 21.58 29.61 -169.99 -5.03 16.55 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.18 3.67 2.70 -67.81 -0.18 3.48 16 15 C -0.12 -2.28 5.45 -26.65 -0.15 -2.43 16 16 C 0.06 0.92 5.29 -3.83 -0.02 0.90 16 17 N -0.53 -8.16 4.16 -234.67 -0.98 -9.13 16 18 C 0.06 0.76 4.36 -3.83 -0.02 0.75 16 19 C -0.10 -1.07 2.80 -90.62 -0.25 -1.33 16 20 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 21 C -0.14 -1.60 9.01 37.15 0.33 -1.27 16 22 C 0.06 0.99 5.46 -3.84 -0.02 0.96 16 23 C -0.11 -2.28 5.30 -26.66 -0.14 -2.42 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 2.43 5.50 -51.93 -0.29 2.15 16 32 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.04 0.79 7.77 -51.93 -0.40 0.38 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.47 7.12 -51.93 -0.37 1.10 16 37 H 0.07 0.94 6.09 -51.93 -0.32 0.63 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 40 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 41 H 0.07 0.82 6.22 -51.93 -0.32 0.50 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 47 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 50 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 51 H 0.08 1.73 7.48 -51.93 -0.39 1.35 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -27.06 383.85 -10.68 -37.74 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -10.43 Total: 0.03 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.27 Total: -12.08 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.73 Total: -48.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.06 -10.68 -37.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258017382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.012 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds