Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46503 * 2 1 4 4 C 1.53006 * 109.46699 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47021 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47058 * 186.00180 * 5 4 3 7 7 H 1.08994 * 109.47246 * 54.12630 * 6 5 4 8 8 C 1.52998 * 109.47215 * 174.13238 * 6 5 4 9 9 C 1.53001 * 109.47106 * 185.65772 * 8 6 5 10 10 N 1.46904 * 109.46869 * 294.12767 * 6 5 4 11 11 C 1.46958 * 110.99605 * 88.63087 * 10 6 5 12 12 C 1.53053 * 109.36349 * 176.81422 * 11 10 6 13 13 N 1.46955 * 109.36509 * 58.39818 * 12 11 10 14 14 C 1.46904 * 111.00010 * 176.81558 * 13 12 11 15 15 C 1.50705 * 109.47168 * 58.83366 * 14 13 12 16 16 H 1.07997 * 120.00045 * 5.01916 * 15 14 13 17 17 C 1.37869 * 119.99904 * 185.01975 * 15 14 13 18 18 N 1.31517 * 120.00268 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46820 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46652 * 120.00212 * 19 17 15 22 22 H 1.48503 * 109.47086 * 239.99790 * 19 17 15 23 23 C 1.46958 * 110.88306 * 300.68029 * 13 12 11 24 24 C 1.46957 * 111.00212 * 324.83417 * 10 6 5 25 25 H 1.09008 * 109.47295 * 299.99603 * 1 2 3 26 26 H 1.09002 * 109.47889 * 60.00157 * 1 2 3 27 27 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47178 * 240.00379 * 2 1 3 29 29 H 1.08997 * 109.47229 * 119.99608 * 2 1 3 30 30 H 1.09000 * 109.47601 * 60.00193 * 3 2 1 31 31 H 1.09003 * 109.47467 * 299.99667 * 3 2 1 32 32 H 1.09000 * 109.47284 * 59.99573 * 4 3 2 33 33 H 1.09011 * 109.46858 * 299.99645 * 4 3 2 34 34 H 1.08993 * 109.47942 * 66.00012 * 5 4 3 35 35 H 1.09001 * 109.47302 * 305.99146 * 5 4 3 36 36 H 1.09004 * 109.46789 * 305.65759 * 8 6 5 37 37 H 1.09000 * 109.47210 * 65.65408 * 8 6 5 38 38 H 1.09003 * 109.47056 * 64.98211 * 9 8 6 39 39 H 1.09004 * 109.47263 * 184.98197 * 9 8 6 40 40 H 1.08996 * 109.46929 * 304.98369 * 9 8 6 41 41 H 1.08996 * 109.48853 * 296.77455 * 11 10 6 42 42 H 1.08994 * 109.49035 * 56.84525 * 11 10 6 43 43 H 1.09003 * 109.48749 * 298.43510 * 12 11 10 44 44 H 1.08995 * 109.49490 * 178.37017 * 12 11 10 45 45 H 1.08998 * 109.47334 * 178.83236 * 14 13 12 46 46 H 1.09000 * 109.46883 * 298.83741 * 14 13 12 47 47 H 0.96997 * 120.00132 * 179.97438 * 18 17 15 48 48 H 1.09004 * 109.48702 * 299.35541 * 23 13 12 49 49 H 1.08994 * 109.49035 * 179.28772 * 23 13 12 50 50 H 1.09004 * 109.48340 * 303.15270 * 24 10 6 51 51 H 1.09000 * 109.48939 * 63.19255 * 24 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6023 2.8879 -0.1515 7 1 5.8804 2.3163 -1.0368 8 6 6.0977 4.3281 -0.2977 9 6 7.5995 4.3236 -0.5899 10 7 6.2137 2.2782 1.0370 11 6 6.3455 0.8236 0.8739 12 6 7.0568 0.2383 2.0961 13 7 6.2906 0.5623 3.3075 14 6 6.9020 -0.0474 4.4960 15 6 8.3170 0.4494 4.6439 16 1 8.6954 1.2086 3.9754 17 6 9.1286 -0.0653 5.6325 18 7 8.6680 -0.9901 6.4462 19 14 10.8829 0.5501 5.8153 20 1 11.1550 1.5832 4.7841 21 1 11.0620 1.1403 7.1662 22 1 11.8258 -0.5839 5.6417 23 6 6.1588 2.0168 3.4706 24 6 5.4474 2.6021 2.2484 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9287 0.8892 34 1 3.8073 3.3665 0.9391 35 1 3.6312 3.4295 -0.8310 36 1 5.5692 4.8124 -1.1189 37 1 5.9090 4.8729 0.6273 38 1 7.7799 3.8566 -1.5581 39 1 7.9695 5.3488 -0.6064 40 1 8.1191 3.7623 0.1867 41 1 5.3556 0.3770 0.7809 42 1 6.9271 0.6094 -0.0226 43 1 8.0570 0.6647 2.1736 44 1 7.1299 -0.8441 1.9907 45 1 6.3269 0.2252 5.3809 46 1 6.9073 -1.1319 4.3860 47 1 9.2390 -1.3525 7.1415 48 1 7.1488 2.4634 3.5637 49 1 5.5772 2.2310 4.3671 50 1 5.3744 3.6845 2.3539 51 1 4.4472 2.1760 2.1708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258444905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = -15.927930 kcal Electronic energy + Delta-G solvation = -23987.684820 eV Core-core repulsion = 20920.993113 eV Total energy + Delta-G solvation = -3066.691707 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66348 -36.67680 -35.42685 -33.11662 -32.03618 -31.54452 -30.30239 -28.32838 -26.82417 -25.02785 -23.99150 -23.07400 -21.69818 -21.58878 -20.90682 -19.86945 -18.75879 -16.41261 -16.34566 -15.54335 -14.97366 -14.67376 -14.53204 -14.24198 -13.89667 -13.70915 -13.62069 -13.42003 -13.35932 -12.76557 -12.63788 -12.31351 -12.07670 -11.76890 -11.67072 -11.55861 -11.45516 -11.17968 -11.07090 -10.98612 -10.88537 -10.78700 -10.70228 -10.58310 -10.38223 -10.36512 -10.23852 -10.05304 -9.95304 -9.74276 -9.43754 -8.40016 -7.78677 -7.09594 -5.98966 -4.07584 3.28913 3.37087 3.41815 4.23003 4.44229 4.55712 4.83202 4.95806 5.01172 5.09944 5.13341 5.23072 5.31194 5.31932 5.43341 5.49616 5.51311 5.58095 5.67298 5.68681 5.73221 5.77730 5.83209 5.85920 5.93527 5.94332 6.02737 6.03425 6.09143 6.12957 6.14542 6.19115 6.25186 6.28324 6.33212 6.44392 6.47390 6.56611 6.71721 6.85398 6.97060 7.28788 7.49520 7.53951 7.57034 7.94338 8.11472 8.34831 8.35300 9.03813 9.59245 11.05950 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.004510 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.334742 B = 6206.549980 C = 7537.653607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.132 4.132 5 C -0.149 4.149 6 C 0.082 3.918 7 H 0.072 0.928 8 C -0.108 4.108 9 C -0.144 4.144 10 N -0.525 5.525 11 C 0.046 3.954 12 C 0.066 3.934 13 N -0.542 5.542 14 C 0.187 3.813 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.063 3.937 24 C 0.055 3.945 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.044 0.956 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 6.895 -15.004 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.169 4.169 5 C -0.188 4.188 6 C -0.027 4.027 7 H 0.090 0.910 8 C -0.146 4.146 9 C -0.202 4.202 10 N -0.249 5.249 11 C -0.082 4.082 12 C -0.063 4.063 13 N -0.266 5.266 14 C 0.061 3.939 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.066 4.066 24 C -0.073 4.073 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.264 6.770 -14.845 19.826 hybrid contribution 1.096 0.284 0.250 1.159 sum -10.168 7.054 -14.596 19.136 Atomic orbital electron populations 1.21773 0.96193 1.01414 1.01525 1.21538 0.95537 0.97124 1.02188 1.21596 0.95701 0.96567 1.01508 1.21996 0.95156 0.96939 1.02821 1.22297 0.96881 0.97191 1.02383 1.21782 0.91298 0.95822 0.93759 0.90994 1.21474 0.96595 0.95661 1.00879 1.21661 0.96156 1.00732 1.01633 1.62275 1.49998 1.10825 1.01796 1.22551 0.99997 0.87205 0.98437 1.21903 0.96250 0.99098 0.89081 1.62678 1.50340 1.09031 1.04538 1.19727 0.92258 0.95182 0.86743 1.21815 0.98532 1.22530 1.15515 0.92251 1.24962 0.98324 0.94854 0.95704 1.69958 1.36398 1.27938 1.18873 0.86607 0.85130 0.78773 0.77939 1.19787 1.21032 1.21016 1.21940 0.99476 0.89834 0.95354 1.22326 0.95810 0.99094 0.90109 0.92800 0.93089 0.92923 0.92296 0.91681 0.92209 0.92622 0.92409 0.89907 0.91123 0.92252 0.92664 0.92121 0.93737 0.93832 0.91018 0.93308 0.91817 0.93466 0.91690 0.95627 0.94888 0.92960 0.93730 0.91781 0.91744 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.24 5.93 -26.73 -0.16 -1.40 16 3 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 4 C -0.13 -1.47 3.62 -26.73 -0.10 -1.56 16 5 C -0.15 -1.61 4.15 -26.73 -0.11 -1.73 16 6 C 0.08 0.99 1.92 -67.71 -0.13 0.86 16 7 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 8 C -0.11 -1.22 5.53 -26.73 -0.15 -1.36 16 9 C -0.14 -1.70 9.86 37.16 0.37 -1.33 16 10 N -0.52 -7.76 3.94 -226.49 -0.89 -8.65 16 11 C 0.05 0.72 5.17 -3.76 -0.02 0.70 16 12 C 0.07 1.29 5.23 -3.77 -0.02 1.27 16 13 N -0.54 -11.60 4.92 -235.91 -1.16 -12.76 16 14 C 0.19 4.83 5.14 -4.97 -0.03 4.81 16 15 C -0.54 -15.07 7.66 -34.44 -0.26 -15.33 16 16 H 0.06 1.66 5.82 -52.49 -0.31 1.35 16 17 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.06 1.23 5.32 -3.77 -0.02 1.21 16 24 C 0.05 0.85 4.15 -3.77 -0.02 0.83 16 25 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.11 4.25 -51.92 -0.22 0.89 16 34 H 0.07 0.82 6.04 -51.93 -0.31 0.50 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.72 7.30 -51.93 -0.38 0.34 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.01 7.64 -51.93 -0.40 0.61 16 41 H 0.05 0.74 4.58 -51.93 -0.24 0.50 16 42 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 43 H 0.05 1.05 6.61 -51.93 -0.34 0.71 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.03 0.71 8.11 -51.93 -0.42 0.29 16 46 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 49 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 50 H 0.06 0.93 7.12 -51.93 -0.37 0.56 16 51 H 0.04 0.68 4.95 -51.93 -0.26 0.42 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -28.21 372.57 -11.12 -39.33 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -9.89 Total: -0.93 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.51 Total: -13.57 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -1.32 Total: -47.12 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.21 -11.12 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258444905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.402 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds