Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 C 1.52998 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47318 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47020 * 55.00293 * 5 4 3 7 7 C 1.53003 * 109.47399 * 174.99779 * 5 4 3 8 8 C 1.53000 * 109.47440 * 183.20742 * 7 5 4 9 9 C 1.52994 * 109.47205 * 173.83393 * 8 7 5 10 10 N 1.46901 * 109.47247 * 295.00043 * 5 4 3 11 11 C 1.46950 * 110.99829 * 152.26699 * 10 5 4 12 12 C 1.53054 * 109.36381 * 183.18890 * 11 10 5 13 13 N 1.46962 * 109.36266 * 301.59543 * 12 11 10 14 14 C 1.46898 * 111.00305 * 183.18679 * 13 12 11 15 15 C 1.50694 * 109.47288 * 170.00255 * 14 13 12 16 16 H 1.07997 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99860 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00026 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99892 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47295 * 120.00068 * 19 17 15 22 22 H 1.48496 * 109.47074 * 240.00004 * 19 17 15 23 23 C 1.46959 * 110.87854 * 59.31898 * 13 12 11 24 24 C 1.46956 * 110.99617 * 276.06266 * 10 5 4 25 25 H 1.09005 * 109.46962 * 60.00319 * 1 2 3 26 26 H 1.09005 * 109.47427 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47595 * 300.00433 * 1 2 3 28 28 H 1.08998 * 109.46910 * 239.99495 * 2 1 3 29 29 H 1.09005 * 109.46962 * 119.99681 * 2 1 3 30 30 H 1.08992 * 109.47918 * 59.99607 * 3 2 1 31 31 H 1.09002 * 109.46835 * 299.99168 * 3 2 1 32 32 H 1.09004 * 109.47595 * 59.99566 * 4 3 2 33 33 H 1.09005 * 109.46962 * 299.99681 * 4 3 2 34 34 H 1.09007 * 109.47208 * 303.20501 * 7 5 4 35 35 H 1.08998 * 109.47312 * 63.20069 * 7 5 4 36 36 H 1.09003 * 109.46658 * 293.83441 * 8 7 5 37 37 H 1.09007 * 109.47031 * 53.83278 * 8 7 5 38 38 H 1.09004 * 109.47206 * 180.02562 * 9 8 7 39 39 H 1.09003 * 109.47352 * 299.99623 * 9 8 7 40 40 H 1.08993 * 109.47257 * 59.99801 * 9 8 7 41 41 H 1.08998 * 109.49562 * 63.21909 * 11 10 5 42 42 H 1.09000 * 109.50788 * 303.16373 * 11 10 5 43 43 H 1.08999 * 109.49445 * 181.63157 * 12 11 10 44 44 H 1.08997 * 109.50690 * 61.57158 * 12 11 10 45 45 H 1.09000 * 109.46964 * 290.00478 * 14 13 12 46 46 H 1.09001 * 109.46847 * 49.99677 * 14 13 12 47 47 H 0.97005 * 119.99957 * 179.97438 * 18 17 15 48 48 H 1.09001 * 109.48744 * 60.64633 * 23 13 12 49 49 H 1.09001 * 109.48853 * 180.71216 * 23 13 12 50 50 H 1.08993 * 109.49249 * 296.77861 * 24 10 5 51 51 H 1.09004 * 109.48979 * 56.82473 * 24 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6457 3.4242 0.8406 7 6 5.6049 2.8868 0.1238 8 6 6.1083 4.3294 0.2037 9 6 7.6126 4.3299 0.4826 10 7 3.6908 3.5414 -1.2565 11 6 3.5491 4.9921 -1.0702 12 6 3.0670 5.6269 -2.3768 13 7 4.0282 5.3278 -3.4475 14 6 3.6391 5.9842 -4.7028 15 6 4.7606 5.8623 -5.7019 16 1 5.6711 5.3482 -5.4317 17 6 4.6241 6.4071 -6.9612 18 7 3.5152 7.0326 -7.2904 19 14 6.0140 6.2553 -8.2000 20 1 7.1438 5.5113 -7.5877 21 1 5.5309 5.5242 -9.3988 22 1 6.4723 7.6105 -8.5982 23 6 4.1700 3.8770 -3.6338 24 6 4.6521 3.2423 -2.3271 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8898 31 1 1.6767 1.9562 -0.8901 32 1 3.9330 0.9287 -0.8908 33 1 3.9336 0.9285 0.8892 34 1 5.8960 2.3500 1.0268 35 1 6.0415 2.3972 -0.7466 36 1 5.9140 4.8349 -0.7423 37 1 5.5895 4.8513 1.0078 38 1 7.9712 5.3577 0.5399 39 1 7.8070 3.8245 1.4286 40 1 8.1314 3.8080 -0.3214 41 1 4.5127 5.4191 -0.7923 42 1 2.8233 5.1885 -0.2810 43 1 2.9888 6.7066 -2.2495 44 1 2.0907 5.2202 -2.6405 45 1 2.7443 5.5058 -5.1007 46 1 3.4340 7.0379 -4.5134 47 1 3.4193 7.4162 -8.1763 48 1 3.2063 3.4501 -3.9116 49 1 4.8961 3.6810 -4.4228 50 1 5.6282 3.6493 -2.0636 51 1 4.7305 2.1625 -2.4543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258763910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -14.612283 kcal Electronic energy + Delta-G solvation = -23857.890533 eV Core-core repulsion = 20791.255876 eV Total energy + Delta-G solvation = -3066.634657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72247 -36.63921 -35.18932 -33.43113 -32.44369 -31.15292 -30.35645 -28.24199 -27.10374 -25.06746 -24.02300 -23.25307 -21.84977 -21.26594 -20.70059 -19.98555 -18.85152 -16.49988 -16.21896 -15.33070 -15.23878 -14.78059 -14.50290 -14.25704 -14.06857 -13.74479 -13.58521 -13.42695 -13.34089 -12.81915 -12.68706 -12.33115 -12.01562 -11.98890 -11.72998 -11.63623 -11.51334 -11.20764 -11.10675 -11.00794 -10.91072 -10.76871 -10.69700 -10.53518 -10.51805 -10.37799 -10.25491 -10.17867 -10.08358 -9.62362 -9.12554 -8.41664 -7.83999 -7.15817 -6.00391 -4.01469 3.31948 3.39324 3.43977 4.17535 4.44445 4.57012 4.94758 4.98406 4.99686 5.04435 5.08047 5.16167 5.26858 5.35379 5.37935 5.47488 5.49526 5.58849 5.66009 5.68621 5.73560 5.76578 5.78480 5.84970 5.87558 5.95454 5.96351 5.97926 6.03566 6.07001 6.11010 6.17283 6.20376 6.23139 6.31815 6.38233 6.44304 6.50919 6.55717 6.72617 6.76493 7.28534 7.39116 7.44008 7.48701 7.83679 8.13552 8.26262 8.59858 9.06613 9.62711 11.10567 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.004282 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.660153 B = 6537.420066 C = 7581.676782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.104 4.104 5 C 0.083 3.917 6 H 0.072 0.928 7 C -0.148 4.148 8 C -0.139 4.139 9 C -0.149 4.149 10 N -0.526 5.526 11 C 0.046 3.954 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.067 3.933 24 C 0.052 3.948 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.028 0.972 45 H -0.010 1.010 46 H 0.028 0.972 47 H 0.260 0.740 48 H 0.026 0.974 49 H 0.083 0.917 50 H 0.049 0.951 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 -10.767 17.425 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.026 4.026 6 H 0.090 0.910 7 C -0.187 4.187 8 C -0.176 4.176 9 C -0.207 4.207 10 N -0.251 5.251 11 C -0.082 4.082 12 C -0.072 4.072 13 N -0.262 5.262 14 C 0.068 3.932 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.061 4.061 24 C -0.076 4.076 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.008 0.992 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.026 -10.663 17.268 20.295 hybrid contribution 0.618 0.019 -0.773 0.990 sum 0.644 -10.644 16.495 19.642 Atomic orbital electron populations 1.21767 0.96230 1.01098 1.01828 1.21546 0.95621 0.97674 1.01379 1.21496 0.95071 0.95711 1.02604 1.21550 0.96002 0.95465 1.01175 1.21772 0.92852 0.95468 0.92522 0.90973 1.22300 0.96974 0.97248 1.02191 1.21957 0.95850 0.96961 1.02799 1.21749 0.96393 1.01491 1.01019 1.62325 1.47721 1.09720 1.05291 1.22510 1.00622 0.87482 0.97570 1.22058 0.94297 0.99185 0.91698 1.62272 1.46484 1.08647 1.08764 1.19693 0.95200 0.93934 0.84364 1.21195 1.01508 1.35236 0.96400 0.91913 1.24988 0.95851 0.95432 0.98362 1.69972 1.25778 1.37415 1.20684 0.86469 0.82261 0.77748 0.81111 1.19689 1.21136 1.21059 1.21996 1.00008 0.88631 0.95514 1.22363 0.94382 0.99215 0.91615 0.92602 0.93248 0.93030 0.92278 0.92754 0.92925 0.90484 0.92032 0.92537 0.92206 0.91159 0.89700 0.92440 0.92857 0.93336 0.92804 0.92699 0.91712 0.91362 0.95420 0.99171 0.95343 0.93032 0.95601 0.89894 0.93289 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.11 -1.18 5.10 -26.73 -0.14 -1.32 16 4 C -0.10 -1.09 4.80 -26.73 -0.13 -1.22 16 5 C 0.08 0.95 1.96 -67.71 -0.13 0.82 16 6 H 0.07 0.82 7.71 -51.93 -0.40 0.42 16 7 C -0.15 -1.62 4.16 -26.73 -0.11 -1.73 16 8 C -0.14 -1.61 4.16 -26.73 -0.11 -1.72 16 9 C -0.15 -1.58 9.91 37.15 0.37 -1.21 16 10 N -0.53 -7.42 4.00 -226.49 -0.91 -8.32 16 11 C 0.05 0.68 5.15 -3.77 -0.02 0.66 16 12 C 0.06 1.05 5.61 -3.76 -0.02 1.02 16 13 N -0.54 -11.63 4.70 -235.91 -1.11 -12.74 16 14 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 15 C -0.50 -14.23 8.47 -34.44 -0.29 -14.52 16 16 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 24 C 0.05 0.81 4.17 -3.77 -0.02 0.80 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 32 H 0.06 0.70 7.24 -51.93 -0.38 0.32 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.07 0.83 6.22 -51.93 -0.32 0.50 16 36 H 0.08 1.20 4.16 -51.93 -0.22 0.98 16 37 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.82 4.45 -51.93 -0.23 0.59 16 42 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 43 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 46 H 0.03 0.80 8.03 -51.93 -0.42 0.39 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.08 1.76 6.79 -51.93 -0.35 1.41 16 50 H 0.05 0.78 4.84 -51.93 -0.25 0.53 16 51 H 0.07 0.95 7.09 -51.93 -0.37 0.58 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -28.83 375.62 -11.19 -40.02 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -10.02 Total: -2.20 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.53 Total: -12.94 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -1.28 Total: -47.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.83 -11.19 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258763910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.406 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds