Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47568 * 2 1 4 4 C 1.52993 * 109.47568 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47383 * 185.15550 * 4 3 2 6 6 C 1.46902 * 111.00450 * 160.33129 * 5 4 3 7 7 C 1.50706 * 109.46750 * 288.41056 * 6 5 4 8 8 H 1.08001 * 119.99719 * 355.05467 * 7 6 5 9 9 C 1.37867 * 119.99923 * 175.05967 * 7 6 5 10 10 N 1.31520 * 119.99887 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00420 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47044 * 89.99917 * 11 9 7 13 13 H 1.48500 * 109.47359 * 210.00164 * 11 9 7 14 14 H 1.48496 * 109.46769 * 330.00513 * 11 9 7 15 15 C 1.46905 * 110.99516 * 284.27975 * 5 4 3 16 16 C 1.53121 * 109.52063 * 175.00151 * 15 5 4 17 17 C 1.53033 * 109.27834 * 177.62571 * 16 15 5 18 18 N 1.46855 * 109.51396 * 300.82588 * 17 16 15 19 19 C 1.46899 * 110.99890 * 185.83471 * 18 17 16 20 20 C 1.53001 * 109.46673 * 169.99568 * 19 18 17 21 21 C 1.53003 * 109.46838 * 179.97438 * 20 19 18 22 22 C 1.46827 * 111.21038 * 61.74723 * 18 17 16 23 23 C 1.53040 * 109.51587 * 298.25051 * 22 18 17 24 24 H 1.09000 * 109.47700 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47600 * 300.00154 * 1 2 3 26 26 H 1.09004 * 109.47107 * 60.00189 * 1 2 3 27 27 H 1.08995 * 109.47091 * 239.99674 * 2 1 3 28 28 H 1.09004 * 109.47107 * 119.99810 * 2 1 3 29 29 H 1.09004 * 109.47028 * 59.99842 * 3 2 1 30 30 H 1.08998 * 109.46886 * 300.00445 * 3 2 1 31 31 H 1.08995 * 109.47344 * 65.15125 * 4 3 2 32 32 H 1.09004 * 109.47189 * 305.15222 * 4 3 2 33 33 H 1.08997 * 109.47225 * 48.40079 * 6 5 4 34 34 H 1.08994 * 109.47424 * 168.40876 * 6 5 4 35 35 H 0.97006 * 119.99718 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.52065 * 54.87401 * 15 5 4 37 37 H 1.08999 * 109.50636 * 57.68233 * 16 15 5 38 38 H 1.09007 * 109.50354 * 297.56229 * 16 15 5 39 39 H 1.09002 * 109.46628 * 60.83163 * 17 16 15 40 40 H 1.08997 * 109.46641 * 180.81619 * 17 16 15 41 41 H 1.08994 * 109.47468 * 289.99647 * 19 18 17 42 42 H 1.09001 * 109.47291 * 50.00207 * 19 18 17 43 43 H 1.08992 * 109.47568 * 299.99528 * 20 19 18 44 44 H 1.09004 * 109.47142 * 60.00628 * 20 19 18 45 45 H 1.09010 * 109.47059 * 60.00678 * 21 20 19 46 46 H 1.09000 * 109.47062 * 179.97438 * 21 20 19 47 47 H 1.08994 * 109.47728 * 300.00338 * 21 20 19 48 48 H 1.08998 * 109.46329 * 178.23679 * 22 18 17 49 49 H 1.08998 * 109.45410 * 58.26161 * 22 18 17 50 50 H 1.09000 * 109.50331 * 299.24266 * 23 22 18 51 51 H 1.08993 * 109.50074 * 179.12060 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0596 2.8218 0.1251 6 6 5.4525 2.8460 0.5913 7 6 5.5035 2.4426 2.0425 8 1 4.5872 2.2707 2.5877 9 6 6.7198 2.2930 2.6740 10 7 6.7643 1.9414 3.9406 11 14 8.3048 2.5898 1.7309 12 1 8.6957 4.0169 1.8564 13 1 9.3806 1.7311 2.2881 14 1 8.0980 2.2574 0.2985 15 6 3.9167 3.5476 -1.1441 16 6 4.3190 5.0115 -0.9445 17 6 4.2249 5.7483 -2.2825 18 7 5.1136 5.1063 -3.2596 19 6 5.1544 5.8688 -4.5146 20 6 6.2672 5.3191 -5.4092 21 6 6.3093 6.1128 -6.7166 22 6 4.7176 3.7136 -3.5031 23 6 4.8265 2.9161 -2.2015 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 1.0105 -0.9316 32 1 3.9330 0.8509 0.8412 33 1 6.0459 2.1492 -0.0005 34 1 5.8556 3.8525 0.4796 35 1 7.6202 1.8358 4.3848 36 1 2.8803 3.4969 -1.4780 37 1 5.3427 5.0602 -0.5735 38 1 3.6475 5.4785 -0.2239 39 1 3.1980 5.7110 -2.6462 40 1 4.5246 6.7874 -2.1468 41 1 4.1970 5.7763 -5.0272 42 1 5.3495 6.9186 -4.2957 43 1 7.2246 5.4116 -4.8967 44 1 6.0721 4.2692 -5.6282 45 1 6.5042 7.1628 -6.4981 46 1 7.1024 5.7215 -7.3538 47 1 5.3519 6.0200 -7.2291 48 1 5.3750 3.2751 -4.2539 49 1 3.6884 3.6861 -3.8610 50 1 5.8582 2.9319 -1.8502 51 1 4.5176 1.8860 -2.3790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258774664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -15.691741 kcal Electronic energy + Delta-G solvation = -23778.130599 eV Core-core repulsion = 20711.449134 eV Total energy + Delta-G solvation = -3066.681466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.48328 -37.16668 -34.79768 -33.73900 -32.40859 -30.71865 -30.64692 -28.88315 -26.95674 -25.37503 -23.31720 -23.05764 -22.43190 -21.02165 -20.63712 -20.36831 -18.43910 -16.88595 -16.09121 -15.49616 -15.11395 -14.91693 -14.54904 -14.44547 -13.95492 -13.86889 -13.66049 -13.43262 -13.24228 -12.71226 -12.62101 -12.43969 -12.27808 -12.14469 -12.10771 -11.85383 -11.56869 -11.33289 -11.06409 -10.92448 -10.84657 -10.79651 -10.76505 -10.57198 -10.39249 -10.21818 -10.09353 -9.99371 -9.77365 -9.61652 -9.17049 -8.49284 -8.24068 -7.21542 -5.99437 -3.95375 3.33069 3.40247 3.43629 3.91526 4.47444 4.67421 4.75477 4.89844 5.05277 5.17008 5.20293 5.23767 5.27826 5.32838 5.35577 5.39750 5.43819 5.48496 5.54223 5.59047 5.65978 5.71511 5.80090 5.83497 5.86764 5.90107 5.97049 6.04408 6.06596 6.11028 6.12480 6.15534 6.19906 6.28682 6.35485 6.39038 6.51072 6.60553 6.72686 6.75868 6.86733 7.02331 7.09934 7.18886 7.21239 7.72579 8.01222 8.17202 8.74590 9.11452 9.63606 11.13892 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.005774 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.393566 B = 4848.532793 C = 6928.004777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.110 4.110 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.158 3.842 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.903 5.903 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.086 3.914 16 C -0.111 4.111 17 C 0.061 3.939 18 N -0.539 5.539 19 C 0.057 3.943 20 C -0.123 4.123 21 C -0.150 4.150 22 C 0.063 3.937 23 C -0.153 4.153 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.086 0.914 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.027 0.973 50 H 0.075 0.925 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 4.145 -17.837 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.070 4.070 5 N -0.242 5.242 6 C 0.032 3.968 7 C -0.543 4.543 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.542 5.542 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.024 4.024 16 C -0.149 4.149 17 C -0.068 4.068 18 N -0.264 5.264 19 C -0.071 4.071 20 C -0.161 4.161 21 C -0.208 4.208 22 C -0.066 4.066 23 C -0.193 4.193 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.008 0.992 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.045 0.955 50 H 0.094 0.906 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.426 4.340 -17.102 18.778 hybrid contribution 0.660 -0.282 -1.361 1.538 sum -5.766 4.058 -18.463 19.764 Atomic orbital electron populations 1.21753 0.96424 1.00930 1.01521 1.21496 0.95226 0.97690 1.01806 1.21566 0.96126 0.95451 1.01685 1.22073 0.93890 0.90619 1.00448 1.62145 1.23784 1.13657 1.24577 1.20266 0.84173 0.96180 0.96219 1.21080 0.94365 1.45306 0.93502 0.90239 1.24886 0.98685 0.95010 0.94721 1.69904 1.25555 1.48546 1.10219 0.86934 0.83932 0.78552 0.80813 1.20183 1.21378 1.19127 1.21708 0.97540 0.93909 0.89232 1.21704 1.03467 0.94560 0.95206 1.22090 0.93691 0.98124 0.92846 1.61916 1.52280 1.02208 1.10020 1.22109 0.97251 0.97939 0.89838 1.21561 0.99653 0.99689 0.95207 1.21737 1.01470 1.00321 0.97264 1.22041 0.97966 0.88654 0.97921 1.22330 1.02602 0.98740 0.95588 0.93290 0.92741 0.93256 0.92710 0.91772 0.91306 0.93327 0.95982 0.89578 0.99156 0.95266 0.92810 0.91553 0.90286 0.90798 0.95363 0.90981 0.95344 0.91005 0.91077 0.92026 0.92730 0.92660 0.93018 0.91120 0.95467 0.90614 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.36 16 2 C -0.12 -1.69 5.93 -26.74 -0.16 -1.85 16 3 C -0.11 -1.73 5.24 -26.74 -0.14 -1.87 16 4 C 0.06 1.09 4.71 -3.83 -0.02 1.07 16 5 N -0.52 -10.61 4.37 -227.93 -1.00 -11.61 16 6 C 0.16 3.78 2.73 -4.97 -0.01 3.77 16 7 C -0.50 -14.30 8.83 -34.44 -0.30 -14.60 16 8 H 0.08 2.47 8.04 -52.49 -0.42 2.05 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 11 Si 0.87 21.81 27.57 -169.99 -4.69 17.12 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.48 6.40 56.52 0.36 -6.12 16 15 C 0.09 1.45 2.20 -67.58 -0.15 1.30 16 16 C -0.11 -1.81 5.28 -26.65 -0.14 -1.95 16 17 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 18 N -0.54 -7.29 4.66 -234.69 -1.09 -8.38 16 19 C 0.06 0.62 4.96 -3.82 -0.02 0.60 16 20 C -0.12 -1.23 5.86 -26.73 -0.16 -1.39 16 21 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 22 C 0.06 0.84 5.29 -3.84 -0.02 0.82 16 23 C -0.15 -2.46 4.76 -26.65 -0.13 -2.58 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.72 7.03 -51.93 -0.37 0.35 16 31 H 0.02 0.39 5.95 -51.93 -0.31 0.09 16 32 H 0.09 1.87 7.09 -51.93 -0.37 1.50 16 33 H -0.01 -0.23 5.79 -51.93 -0.30 -0.53 16 34 H 0.03 0.72 5.32 -51.93 -0.28 0.44 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.07 1.07 6.83 -51.93 -0.35 0.71 16 37 H 0.08 1.47 6.03 -51.93 -0.31 1.16 16 38 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 41 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 42 H 0.07 0.74 7.99 -51.93 -0.41 0.33 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 45 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 49 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 1.41 6.63 -51.93 -0.34 1.07 16 51 H 0.06 1.01 6.38 -51.93 -0.33 0.68 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -29.68 373.75 -10.96 -40.64 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -9.96 Total: -0.13 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.63 Total: -16.21 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -1.32 Total: -47.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.69 Total: 17.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.68 -10.96 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258774664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.948 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds