Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47568 * 2 1 4 4 C 1.52993 * 109.47568 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47383 * 185.15550 * 4 3 2 6 6 C 1.46902 * 111.00450 * 160.33129 * 5 4 3 7 7 C 1.50706 * 109.46750 * 288.41056 * 6 5 4 8 8 H 1.08001 * 119.99719 * 355.05467 * 7 6 5 9 9 C 1.37867 * 119.99923 * 175.05967 * 7 6 5 10 10 N 1.31520 * 119.99887 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00420 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47044 * 89.99917 * 11 9 7 13 13 H 1.48500 * 109.47359 * 210.00164 * 11 9 7 14 14 H 1.48496 * 109.46769 * 330.00513 * 11 9 7 15 15 C 1.46905 * 110.99516 * 284.27975 * 5 4 3 16 16 C 1.53121 * 109.52063 * 175.00151 * 15 5 4 17 17 C 1.53033 * 109.27834 * 177.62571 * 16 15 5 18 18 N 1.46855 * 109.51396 * 300.82588 * 17 16 15 19 19 C 1.46899 * 110.99890 * 185.83471 * 18 17 16 20 20 C 1.53001 * 109.46673 * 169.99568 * 19 18 17 21 21 C 1.53003 * 109.46838 * 179.97438 * 20 19 18 22 22 C 1.46827 * 111.21038 * 61.74723 * 18 17 16 23 23 C 1.53040 * 109.51587 * 298.25051 * 22 18 17 24 24 H 1.09000 * 109.47700 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47600 * 300.00154 * 1 2 3 26 26 H 1.09004 * 109.47107 * 60.00189 * 1 2 3 27 27 H 1.08995 * 109.47091 * 239.99674 * 2 1 3 28 28 H 1.09004 * 109.47107 * 119.99810 * 2 1 3 29 29 H 1.09004 * 109.47028 * 59.99842 * 3 2 1 30 30 H 1.08998 * 109.46886 * 300.00445 * 3 2 1 31 31 H 1.08995 * 109.47344 * 65.15125 * 4 3 2 32 32 H 1.09004 * 109.47189 * 305.15222 * 4 3 2 33 33 H 1.08997 * 109.47225 * 48.40079 * 6 5 4 34 34 H 1.08994 * 109.47424 * 168.40876 * 6 5 4 35 35 H 0.97006 * 119.99718 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.52065 * 54.87401 * 15 5 4 37 37 H 1.08999 * 109.50636 * 57.68233 * 16 15 5 38 38 H 1.09007 * 109.50354 * 297.56229 * 16 15 5 39 39 H 1.09002 * 109.46628 * 60.83163 * 17 16 15 40 40 H 1.08997 * 109.46641 * 180.81619 * 17 16 15 41 41 H 1.08994 * 109.47468 * 289.99647 * 19 18 17 42 42 H 1.09001 * 109.47291 * 50.00207 * 19 18 17 43 43 H 1.08992 * 109.47568 * 299.99528 * 20 19 18 44 44 H 1.09004 * 109.47142 * 60.00628 * 20 19 18 45 45 H 1.09010 * 109.47059 * 60.00678 * 21 20 19 46 46 H 1.09000 * 109.47062 * 179.97438 * 21 20 19 47 47 H 1.08994 * 109.47728 * 300.00338 * 21 20 19 48 48 H 1.08998 * 109.46329 * 178.23679 * 22 18 17 49 49 H 1.08998 * 109.45410 * 58.26161 * 22 18 17 50 50 H 1.09000 * 109.50331 * 299.24266 * 23 22 18 51 51 H 1.08993 * 109.50074 * 179.12060 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0596 2.8218 0.1251 6 6 5.4525 2.8460 0.5913 7 6 5.5035 2.4426 2.0425 8 1 4.5872 2.2707 2.5877 9 6 6.7198 2.2930 2.6740 10 7 6.7643 1.9414 3.9406 11 14 8.3048 2.5898 1.7309 12 1 8.6957 4.0169 1.8564 13 1 9.3806 1.7311 2.2881 14 1 8.0980 2.2574 0.2985 15 6 3.9167 3.5476 -1.1441 16 6 4.3190 5.0115 -0.9445 17 6 4.2249 5.7483 -2.2825 18 7 5.1136 5.1063 -3.2596 19 6 5.1544 5.8688 -4.5146 20 6 6.2672 5.3191 -5.4092 21 6 6.3093 6.1128 -6.7166 22 6 4.7176 3.7136 -3.5031 23 6 4.8265 2.9161 -2.2015 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 1.0105 -0.9316 32 1 3.9330 0.8509 0.8412 33 1 6.0459 2.1492 -0.0005 34 1 5.8556 3.8525 0.4796 35 1 7.6202 1.8358 4.3848 36 1 2.8803 3.4969 -1.4780 37 1 5.3427 5.0602 -0.5735 38 1 3.6475 5.4785 -0.2239 39 1 3.1980 5.7110 -2.6462 40 1 4.5246 6.7874 -2.1468 41 1 4.1970 5.7763 -5.0272 42 1 5.3495 6.9186 -4.2957 43 1 7.2246 5.4116 -4.8967 44 1 6.0721 4.2692 -5.6282 45 1 6.5042 7.1628 -6.4981 46 1 7.1024 5.7215 -7.3538 47 1 5.3519 6.0200 -7.2291 48 1 5.3750 3.2751 -4.2539 49 1 3.6884 3.6861 -3.8610 50 1 5.8582 2.9319 -1.8502 51 1 4.5176 1.8860 -2.3790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258774664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -33.979955 kcal Electronic energy + Delta-G solvation = -23778.923636 eV Core-core repulsion = 20711.449134 eV Total energy + Delta-G solvation = -3067.474502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75722 -38.44905 -35.92012 -35.12309 -34.25050 -31.91516 -31.85174 -30.52244 -28.42331 -26.45183 -24.60762 -24.20358 -24.07658 -22.18807 -21.77844 -21.52282 -19.93317 -18.99516 -17.31072 -16.65553 -16.38672 -16.30631 -15.93853 -15.65570 -15.51998 -15.05711 -14.93958 -14.59811 -14.54673 -14.39919 -13.81517 -13.80093 -13.49713 -13.32680 -13.18143 -13.00054 -12.77557 -12.67938 -12.39640 -12.24401 -12.14008 -11.96747 -11.91526 -11.88337 -11.70841 -11.64443 -11.56038 -11.49124 -11.28394 -11.20427 -10.99649 -10.72542 -9.22273 -8.85482 -8.27381 -6.28353 1.32740 1.33091 1.44054 2.33509 2.94031 3.06311 3.20014 3.83294 3.87682 3.97135 4.08666 4.13368 4.18060 4.24013 4.30017 4.33881 4.43953 4.47044 4.49920 4.56390 4.60615 4.66766 4.70567 4.76808 4.83228 4.85550 4.86980 4.90089 4.94599 4.96532 5.02539 5.06627 5.10963 5.14508 5.21443 5.23453 5.29796 5.31833 5.34665 5.41830 5.46566 5.49699 5.54132 5.63123 6.05501 6.17685 6.23572 6.49562 6.73150 6.79037 7.34983 8.89643 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.005774 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.393566 B = 4848.532793 C = 6928.004777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.099 4.099 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.176 3.824 7 C -0.508 4.508 8 H 0.035 0.965 9 C 0.011 3.989 10 N -0.949 5.949 11 Si 0.939 3.061 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.255 1.255 15 C 0.087 3.913 16 C -0.110 4.110 17 C 0.069 3.931 18 N -0.558 5.558 19 C 0.059 3.941 20 C -0.121 4.121 21 C -0.146 4.146 22 C 0.070 3.930 23 C -0.147 4.147 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.045 0.955 33 H -0.016 1.016 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.042 0.958 50 H 0.046 0.954 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 4.946 -21.191 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.137 4.137 4 C -0.067 4.067 5 N -0.258 5.258 6 C 0.049 3.951 7 C -0.547 4.547 8 H 0.054 0.946 9 C -0.186 4.186 10 N -0.590 5.590 11 Si 0.763 3.237 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.179 1.179 15 C -0.022 4.022 16 C -0.148 4.148 17 C -0.059 4.059 18 N -0.284 5.284 19 C -0.069 4.069 20 C -0.159 4.159 21 C -0.203 4.203 22 C -0.058 4.058 23 C -0.186 4.186 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.002 0.998 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.954 5.149 -20.480 22.233 hybrid contribution 0.741 -0.543 -0.266 0.956 sum -6.213 4.606 -20.746 22.141 Atomic orbital electron populations 1.21714 0.94427 1.02095 1.01944 1.21477 0.96933 0.95946 1.01652 1.21465 0.93517 0.97103 1.01596 1.22039 0.96048 0.89384 0.99229 1.62069 1.21394 1.14920 1.27394 1.19905 0.86472 0.95434 0.93287 1.21306 0.92855 1.44911 0.95626 0.94631 1.25748 1.02506 0.94763 0.95576 1.70053 1.26698 1.50125 1.12115 0.85835 0.79195 0.78888 0.79775 1.19142 1.20676 1.17900 1.21802 0.98777 0.93850 0.87759 1.21659 1.01451 0.94566 0.97126 1.21988 0.94658 0.98126 0.91141 1.61885 1.52596 1.02484 1.11387 1.22156 0.98027 0.97905 0.88765 1.21536 0.98607 0.99898 0.95854 1.21699 1.02135 1.00238 0.96272 1.21954 0.99095 0.88448 0.96346 1.22228 1.00325 0.99465 0.96630 0.91804 0.93214 0.91937 0.91481 0.93387 0.93207 0.91396 0.94707 0.93587 0.99831 0.95342 0.92560 0.89797 0.93121 0.91226 0.93843 0.89792 0.94267 0.90371 0.92491 0.92249 0.92309 0.92151 0.92246 0.90103 0.94022 0.93566 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.91 71.98 0.71 -2.35 16 2 C -0.12 -3.21 5.93 30.59 0.18 -3.03 16 3 C -0.10 -3.06 5.24 30.59 0.16 -2.90 16 4 C 0.06 2.33 4.71 86.30 0.41 2.74 16 5 N -0.54 -22.24 4.37 -875.04 -3.83 -26.07 16 6 C 0.18 8.65 2.73 85.56 0.23 8.88 16 7 C -0.51 -30.19 8.83 25.60 0.23 -29.97 16 8 H 0.04 2.36 8.04 -2.91 -0.02 2.34 16 9 C 0.01 0.66 5.47 84.65 0.46 1.13 16 10 N -0.95 -60.60 13.96 21.44 0.30 -60.30 16 11 Si 0.94 45.79 27.57 68.60 1.89 47.69 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.25 -11.86 6.40 99.48 0.64 -11.22 16 15 C 0.09 2.84 2.20 45.00 0.10 2.94 16 16 C -0.11 -3.48 5.28 30.65 0.16 -3.32 16 17 C 0.07 1.68 5.46 86.32 0.47 2.15 16 18 N -0.56 -13.66 4.66 -896.41 -4.17 -17.84 16 19 C 0.06 1.10 4.96 86.30 0.43 1.53 16 20 C -0.12 -2.12 5.86 30.60 0.18 -1.94 16 21 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 22 C 0.07 1.69 5.29 86.33 0.46 2.15 16 23 C -0.15 -4.50 4.76 30.65 0.15 -4.35 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 1.85 7.03 -2.39 -0.02 1.83 16 31 H 0.03 1.23 5.95 -2.39 -0.01 1.22 16 32 H 0.05 2.11 7.09 -2.38 -0.02 2.09 16 33 H -0.02 -0.80 5.79 -2.39 -0.01 -0.82 16 34 H 0.03 1.42 5.32 -2.39 -0.01 1.40 16 35 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 36 H 0.08 2.49 6.83 -2.39 -0.02 2.47 16 37 H 0.05 1.89 6.03 -2.39 -0.01 1.87 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.85 8.02 -2.39 -0.02 1.83 16 41 H 0.04 0.67 8.12 -2.39 -0.02 0.65 16 42 H 0.08 1.37 7.99 -2.39 -0.02 1.36 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 45 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.08 1.81 6.21 -2.39 -0.01 1.79 16 49 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.05 1.69 6.63 -2.39 -0.02 1.67 16 51 H 0.07 2.00 6.38 -2.39 -0.02 1.99 16 Total: -1.00 -66.66 373.75 0.01 -66.65 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.78 Total: 17.44 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 5.04 Total: -27.56 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -7.70 Total: -104.21 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.89 Total: 47.69 kcal Total: -66.66 0.01 -66.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258774664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.667 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds