Wall clock time and date at job start Tue Mar 31 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.46847 * 2 1 4 4 C 1.46505 * 119.99747 * 95.12392 * 3 2 1 5 5 C 1.50703 * 109.46584 * 269.99423 * 4 3 2 6 6 H 1.07991 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99485 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00280 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99708 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46934 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47075 * 299.99787 * 9 7 5 12 12 H 1.48498 * 109.47097 * 60.00209 * 9 7 5 13 13 C 1.34778 * 120.00110 * 275.11607 * 3 2 1 14 14 O 1.21284 * 119.99543 * 355.65359 * 13 3 2 15 15 C 1.50688 * 119.99868 * 175.65203 * 13 3 2 16 16 H 1.09003 * 109.91227 * 326.09856 * 15 13 3 17 17 C 1.53999 * 109.91897 * 87.20171 * 15 13 3 18 18 C 1.54586 * 105.14083 * 120.57807 * 17 15 13 19 19 C 1.54935 * 102.92421 * 21.95545 * 18 17 15 20 20 N 1.47902 * 109.91617 * 204.78832 * 15 13 3 21 21 C 1.46900 * 110.99998 * 94.80548 * 20 15 13 22 22 C 1.53002 * 109.47245 * 175.83799 * 21 20 15 23 23 C 1.53000 * 109.46898 * 64.10964 * 22 21 20 24 24 C 1.52997 * 109.47277 * 184.10762 * 22 21 20 25 25 H 1.09001 * 109.46860 * 304.64675 * 1 2 3 26 26 H 1.09004 * 109.46835 * 64.63689 * 1 2 3 27 27 H 1.08990 * 109.47355 * 184.64161 * 1 2 3 28 28 H 1.08993 * 109.46662 * 240.00195 * 2 1 3 29 29 H 1.08994 * 109.46881 * 119.99659 * 2 1 3 30 30 H 1.09000 * 109.46875 * 149.99861 * 4 3 2 31 31 H 1.08998 * 109.47363 * 29.99265 * 4 3 2 32 32 H 0.97007 * 120.00065 * 180.02562 * 8 7 5 33 33 H 1.09005 * 110.30817 * 239.49434 * 17 15 13 34 34 H 1.09002 * 110.30813 * 1.65521 * 17 15 13 35 35 H 1.09006 * 110.72611 * 140.32060 * 18 17 15 36 36 H 1.09000 * 110.72083 * 263.41928 * 18 17 15 37 37 H 1.08999 * 110.66464 * 81.02402 * 19 18 17 38 38 H 1.09009 * 110.66773 * 203.98238 * 19 18 17 39 39 H 1.09001 * 109.47304 * 295.83712 * 21 20 15 40 40 H 1.09002 * 109.47396 * 55.84031 * 21 20 15 41 41 H 1.09002 * 109.47000 * 304.11002 * 22 21 20 42 42 H 1.09002 * 109.47264 * 60.00199 * 23 22 21 43 43 H 1.09000 * 109.46875 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.47150 * 299.99605 * 23 22 21 45 45 H 1.08998 * 109.47505 * 304.80011 * 24 22 21 46 46 H 1.08999 * 109.47081 * 64.79623 * 24 22 21 47 47 H 1.09000 * 109.47561 * 184.79735 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3693 2.0341 1.2637 5 6 1.1554 2.7297 1.8238 6 1 0.2164 2.6891 1.2919 7 6 1.2436 3.4178 3.0153 8 7 2.3870 3.4668 3.6633 9 14 -0.2613 4.2794 3.7099 10 1 0.0948 4.9423 4.9902 11 1 -0.7391 5.2988 2.7414 12 1 -1.3356 3.2827 3.9500 13 6 2.1448 2.0514 -1.1626 14 8 1.9301 1.4868 -2.2143 15 6 2.5529 3.5019 -1.1555 16 1 2.1447 3.9982 -0.2750 17 6 4.0887 3.6149 -1.1565 18 6 4.4345 4.4081 -2.4375 19 6 3.1143 5.1573 -2.7480 20 7 2.0682 4.1676 -2.3841 21 6 0.7771 4.8282 -2.1506 22 6 0.3591 5.5905 -3.4096 23 6 0.1278 4.5998 -4.5524 24 6 -0.9333 6.3615 -3.1336 25 1 -0.3633 0.5843 0.8455 26 1 -0.3633 0.4402 -0.9287 27 1 -0.3633 -1.0242 0.0832 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1583 2.7653 1.0880 31 1 2.7193 1.2855 1.9745 32 1 2.4490 3.9506 4.5018 33 1 4.4289 4.1557 -0.2733 34 1 4.5410 2.6237 -1.1915 35 1 5.2432 5.1140 -2.2477 36 1 4.6978 3.7317 -3.2507 37 1 3.0268 6.0532 -2.1335 38 1 3.0559 5.4111 -3.8066 39 1 0.0228 4.0780 -1.9129 40 1 0.8710 5.5255 -1.3181 41 1 1.1469 6.2901 -3.6891 42 1 -0.6600 3.9003 -4.2729 43 1 -0.1695 5.1430 -5.4494 44 1 1.0486 4.0506 -4.7491 45 1 -1.6970 5.6729 -2.7722 46 1 -0.7465 7.1254 -2.3788 47 1 -1.2771 6.8354 -4.0529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262604205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:19 Heat of formation + Delta-G solvation = -47.930085 kcal Electronic energy + Delta-G solvation = -24347.859674 eV Core-core repulsion = 21143.947155 eV Total energy + Delta-G solvation = -3203.912520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76467 -37.84924 -35.37676 -34.98799 -32.71848 -30.90496 -30.68249 -28.51159 -27.01429 -26.90393 -25.12360 -23.27908 -22.80320 -21.35738 -20.70471 -19.34384 -18.09452 -16.70473 -16.35191 -15.88796 -15.43778 -14.77166 -14.68802 -14.15673 -13.90904 -13.77162 -13.32251 -13.11248 -12.86580 -12.65554 -12.46384 -12.20314 -12.08779 -11.95910 -11.63682 -11.52818 -11.39232 -11.22333 -11.07736 -10.97001 -10.91998 -10.77625 -10.73591 -10.46962 -10.42432 -10.35040 -10.26725 -9.97605 -9.68093 -8.87652 -8.57529 -7.88985 -7.61604 -6.19631 -4.26799 3.20978 3.26476 3.28611 3.48901 3.90331 4.28805 4.50637 4.89175 4.97487 5.11448 5.12599 5.17894 5.26483 5.41811 5.50230 5.67292 5.74125 5.79077 5.81632 5.85026 5.93886 5.98914 6.00796 6.06237 6.06844 6.09810 6.12188 6.16708 6.23508 6.27568 6.33175 6.37962 6.51637 6.53871 6.58610 6.64969 6.81288 6.92595 7.14722 7.24978 7.40179 7.65499 7.76938 8.06327 8.44617 8.81155 9.20303 9.41605 10.86568 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.006788 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.106582 B = 4123.653996 C = 4671.108801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 N -0.602 5.602 4 C 0.237 3.763 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.286 1.286 11 H -0.276 1.276 12 H -0.275 1.275 13 C 0.528 3.472 14 O -0.553 6.553 15 C 0.049 3.951 16 H 0.096 0.904 17 C -0.114 4.114 18 C -0.121 4.121 19 C 0.037 3.963 20 N -0.491 5.491 21 C 0.053 3.947 22 C -0.092 4.092 23 C -0.136 4.136 24 C -0.147 4.147 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 3.356 -9.740 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.001 4.001 3 N -0.335 5.335 4 C 0.117 3.883 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.315 3.685 14 O -0.431 6.431 15 C -0.063 4.063 16 H 0.114 0.886 17 C -0.152 4.152 18 C -0.159 4.159 19 C -0.090 4.090 20 N -0.215 5.215 21 C -0.075 4.075 22 C -0.111 4.111 23 C -0.193 4.193 24 C -0.204 4.204 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.099 2.737 -10.509 10.860 hybrid contribution -0.847 1.121 1.495 2.051 sum -0.748 3.858 -9.014 9.834 Atomic orbital electron populations 1.22119 0.96698 1.00811 1.02602 1.21148 0.94211 0.83560 1.01191 1.48250 1.63872 1.13147 1.08184 1.19431 0.96203 0.93169 0.79520 1.21497 0.96680 1.32727 1.06457 0.92110 1.24935 0.96050 0.96190 0.96569 1.69910 1.24462 1.42137 1.16438 0.86648 0.83117 0.79898 0.78387 1.21136 1.20147 1.20090 1.20163 0.77043 0.88090 0.83227 1.90563 1.51691 1.69465 1.31409 1.22386 0.95927 0.94142 0.93809 0.88641 1.22262 0.93398 1.01201 0.98376 1.22463 0.96740 0.98776 0.97878 1.23187 0.91231 0.93884 1.00748 1.64377 1.01650 1.25077 1.30426 1.22348 0.92137 0.97026 0.95970 1.21127 0.97298 0.96971 0.95683 1.21703 1.02676 0.98566 0.96363 1.21820 0.97544 0.99961 1.01123 0.91301 0.93133 0.93124 0.91761 0.91257 0.94458 0.94805 0.92508 0.90422 0.91209 0.91247 0.90875 0.93930 0.90236 0.90735 0.94579 0.91477 0.93081 0.93998 0.91297 0.92598 0.92932 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.20 37.16 0.38 -2.61 16 2 C 0.12 2.34 6.16 -4.04 -0.02 2.32 16 3 N -0.60 -12.94 2.47 -175.06 -0.43 -13.37 16 4 C 0.24 5.58 4.81 -5.19 -0.02 5.55 16 5 C -0.53 -13.63 8.38 -34.44 -0.29 -13.92 16 6 H 0.06 1.58 7.23 -52.49 -0.38 1.20 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.16 13.29 55.43 0.74 -23.43 16 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.53 11.39 6.62 -10.99 -0.07 11.32 16 14 O -0.55 -13.04 16.28 5.55 0.09 -12.95 16 15 C 0.05 0.94 1.96 -67.80 -0.13 0.80 16 16 H 0.10 2.06 6.03 -51.93 -0.31 1.74 16 17 C -0.11 -1.90 5.69 -25.38 -0.14 -2.04 16 18 C -0.12 -1.67 7.06 -24.88 -0.18 -1.84 16 19 C 0.04 0.53 5.34 -1.90 -0.01 0.52 16 20 N -0.49 -8.50 4.03 -223.94 -0.90 -9.40 16 21 C 0.05 0.88 4.24 -3.82 -0.02 0.87 16 22 C -0.09 -1.23 2.73 -90.62 -0.25 -1.48 16 23 C -0.14 -1.84 9.07 37.16 0.34 -1.50 16 24 C -0.15 -1.75 9.19 37.16 0.34 -1.40 16 25 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.21 7.52 -51.93 -0.39 0.82 16 29 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 30 H 0.04 0.90 6.02 -51.93 -0.31 0.59 16 31 H 0.03 0.84 7.86 -51.93 -0.41 0.43 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 34 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.58 8.01 -51.93 -0.42 0.17 16 38 H 0.08 1.02 7.56 -51.92 -0.39 0.62 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 41 H 0.07 0.84 6.69 -51.93 -0.35 0.49 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -28.27 367.03 -8.91 -37.19 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.74 Total: 2.89 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.18 Total: -1.81 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.60 Total: -46.19 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.27 -8.91 -37.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262604205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.742 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds