Wall clock time and date at job start Tue Mar 31 2020 05:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47015 * 111.00069 * 2 1 4 4 C 1.53098 * 109.27170 * 182.41810 * 3 2 1 5 5 O 1.43022 * 109.24246 * 303.10800 * 4 3 2 6 6 C 1.42954 * 113.74529 * 58.59355 * 5 4 3 7 7 C 1.53058 * 109.47178 * 181.43951 * 6 5 4 8 8 C 1.53134 * 109.14463 * 297.62187 * 7 6 5 9 9 C 1.53035 * 109.26725 * 302.40597 * 8 7 6 10 10 N 1.46837 * 109.55885 * 59.17947 * 9 8 7 11 11 C 1.46900 * 110.99995 * 174.17090 * 10 9 8 12 12 C 1.53007 * 109.46981 * 293.95169 * 11 10 9 13 13 C 1.52999 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46777 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99671 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00103 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.46760 * 90.00120 * 18 16 14 20 20 H 1.48501 * 109.46985 * 210.00627 * 18 16 14 21 21 H 1.48506 * 109.46976 * 330.00503 * 18 16 14 22 22 C 1.46861 * 111.19431 * 298.26327 * 10 9 8 23 23 C 1.47026 * 111.00234 * 123.63487 * 2 1 3 24 24 H 1.09003 * 109.47171 * 296.36614 * 1 2 3 25 25 H 1.09005 * 109.47198 * 56.36036 * 1 2 3 26 26 H 1.08997 * 109.47405 * 176.36148 * 1 2 3 27 27 H 1.09005 * 109.50777 * 302.36049 * 3 2 1 28 28 H 1.09003 * 109.50337 * 62.47504 * 3 2 1 29 29 H 1.09004 * 109.50734 * 183.18027 * 4 3 2 30 30 H 1.08994 * 109.50963 * 63.04279 * 4 3 2 31 31 H 1.09004 * 109.52272 * 57.52279 * 7 6 5 32 32 H 1.09001 * 109.52469 * 177.72238 * 7 6 5 33 33 H 1.09002 * 109.50083 * 62.34285 * 8 7 6 34 34 H 1.09003 * 109.50305 * 182.41978 * 8 7 6 35 35 H 1.09004 * 109.45791 * 179.20684 * 9 8 7 36 36 H 1.08998 * 109.45317 * 299.17135 * 9 8 7 37 37 H 1.09001 * 109.47624 * 53.95261 * 11 10 9 38 38 H 1.09000 * 109.47292 * 173.95819 * 11 10 9 39 39 H 1.08991 * 109.47314 * 300.00020 * 12 11 10 40 40 H 1.09000 * 109.46577 * 60.00212 * 12 11 10 41 41 H 1.09000 * 109.47432 * 300.00507 * 13 12 11 42 42 H 1.09000 * 109.47094 * 60.00803 * 13 12 11 43 43 H 0.97001 * 119.99438 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.46579 * 301.64864 * 22 10 9 45 45 H 1.09003 * 109.45984 * 181.67588 * 22 10 9 46 46 H 1.08998 * 109.50282 * 297.65146 * 23 2 1 47 47 H 1.09003 * 109.50029 * 57.77620 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3268 -0.0610 5 8 4.0178 0.5584 1.0401 6 6 3.5244 -0.7829 1.0727 7 6 4.0823 -1.5019 2.3033 8 6 5.6083 -1.5704 2.1960 9 6 5.9917 -2.2874 0.8995 10 7 5.4350 -1.5596 -0.2479 11 6 5.8981 -2.1408 -1.5150 12 6 7.4080 -1.9327 -1.6499 13 6 7.8904 -2.5387 -2.9693 14 6 9.3776 -2.3343 -3.1018 15 1 9.9239 -1.8230 -2.3230 16 6 10.0407 -2.7991 -4.2178 17 7 11.3386 -2.6212 -4.3331 18 14 9.0956 -3.6829 -5.5652 19 1 8.6194 -2.6944 -6.5657 20 1 9.9856 -4.6694 -6.2286 21 1 7.9306 -4.3875 -4.9721 22 6 3.9680 -1.5215 -0.1914 23 6 1.9960 -0.7603 1.1428 24 1 -0.3634 0.4564 0.9208 25 1 -0.3634 0.5693 -0.8556 26 1 -0.3634 -1.0255 -0.0652 27 1 1.6129 1.9094 -0.8679 28 1 1.6830 1.8824 0.9112 29 1 3.9220 2.3403 -0.0042 30 1 3.8383 0.8643 -0.9969 31 1 3.8045 -0.9530 3.2031 32 1 3.6747 -2.5118 2.3510 33 1 6.0183 -0.5605 2.1883 34 1 6.0088 -2.1193 3.0484 35 1 7.0777 -2.3254 0.8131 36 1 5.5929 -3.3017 0.9140 37 1 5.6758 -3.2078 -1.5282 38 1 5.3886 -1.6532 -2.3461 39 1 7.6303 -0.8658 -1.6368 40 1 7.9175 -2.4203 -0.8187 41 1 7.6681 -3.6057 -2.9820 42 1 7.3809 -2.0514 -3.8007 43 1 11.8051 -2.9486 -5.1181 44 1 3.5787 -2.5395 -0.1728 45 1 3.5841 -1.0019 -1.0694 46 1 1.6812 -0.2854 2.0720 47 1 1.6149 -1.7809 1.1076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277948118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:52 Heat of formation + Delta-G solvation = -41.807605 kcal Electronic energy + Delta-G solvation = -23620.844024 eV Core-core repulsion = 20417.196995 eV Total energy + Delta-G solvation = -3203.647029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60017 -37.85383 -35.74041 -34.51998 -32.95179 -31.35318 -31.11337 -29.31618 -27.26668 -26.66240 -24.34672 -23.95931 -23.15619 -21.60915 -20.59519 -19.70523 -19.21887 -16.74963 -16.47677 -16.14553 -15.81866 -15.37023 -15.02110 -14.81640 -14.74343 -14.24667 -14.10793 -13.74230 -13.42889 -12.97672 -12.86668 -12.74977 -12.50703 -12.39510 -12.18090 -12.04418 -11.71475 -11.66583 -11.42625 -11.06593 -10.90698 -10.73786 -10.69187 -10.53767 -10.12450 -9.82002 -9.68696 -9.57370 -9.36334 -9.09360 -8.64034 -8.47920 -7.95585 -5.98471 -3.95627 3.34677 3.41542 3.45810 3.52766 3.66259 4.16834 4.50394 4.56155 4.67070 4.74107 4.77363 4.95561 5.04187 5.09583 5.11702 5.21706 5.32515 5.35583 5.37720 5.47086 5.50657 5.51848 5.55284 5.64730 5.69240 5.74373 5.76704 5.87032 5.91427 5.99347 6.15921 6.19030 6.28061 6.44336 6.63055 6.63655 6.65711 6.68084 7.00577 7.20678 7.36998 7.43566 7.48716 7.56450 7.87058 8.61761 9.07739 9.64527 11.15228 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.003680 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.683976 B = 7605.885971 C = 8099.685145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.017 3.983 4 C 0.063 3.937 5 O -0.356 6.356 6 C 0.128 3.872 7 C -0.105 4.105 8 C -0.112 4.112 9 C 0.052 3.948 10 N -0.528 5.528 11 C 0.056 3.944 12 C -0.096 4.096 13 C -0.013 4.013 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.042 3.958 23 C 0.031 3.969 24 H 0.025 0.975 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.262 0.738 44 H 0.033 0.967 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.927 4.678 12.905 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.111 4.111 4 C -0.014 4.014 5 O -0.274 6.274 6 C 0.088 3.912 7 C -0.143 4.143 8 C -0.149 4.149 9 C -0.076 4.076 10 N -0.253 5.253 11 C -0.071 4.071 12 C -0.134 4.134 13 C -0.051 4.051 14 C -0.554 4.554 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.087 4.087 23 C -0.097 4.097 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.322 4.965 12.513 26.067 hybrid contribution -1.284 -1.004 -0.384 1.675 sum -23.607 3.960 12.128 26.834 Atomic orbital electron populations 1.22380 0.87064 1.02339 1.00528 1.62187 1.07964 1.13856 1.42434 1.22869 0.97449 0.89446 1.01361 1.22615 0.90921 0.96413 0.91493 1.88029 1.69991 1.22136 1.47276 1.21444 0.90267 0.83838 0.95690 1.21555 0.97206 0.99349 0.96233 1.21508 0.94446 1.02336 0.96645 1.22151 1.01023 0.94139 0.90299 1.61873 1.06808 1.54039 1.02532 1.22285 0.98388 0.96330 0.90139 1.21463 0.91182 1.01465 0.99269 1.19556 0.97103 0.95535 0.92935 1.21164 0.91208 1.37167 1.05890 0.91022 1.25043 0.94739 0.95711 0.98126 1.69923 1.07935 1.47342 1.29308 0.86772 0.80168 0.79984 0.82310 1.20319 1.21482 1.19102 1.22501 0.88827 0.98588 0.98754 1.22770 0.95829 0.99193 0.91943 0.95690 0.91182 0.91253 0.89794 0.94259 0.88617 0.91497 0.91347 0.91058 0.90175 0.91721 0.89742 0.95605 0.95635 0.91462 0.92002 0.92878 0.96953 0.97148 0.92837 0.94916 0.89499 0.93896 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.77 16 2 N -0.54 -5.28 4.38 -242.63 -1.06 -6.34 16 3 C 0.02 0.16 5.66 -3.71 -0.02 0.14 16 4 C 0.06 0.70 6.61 37.21 0.25 0.95 16 5 O -0.36 -4.66 9.61 -35.23 -0.34 -5.00 16 6 C 0.13 1.48 0.70 -90.59 -0.06 1.42 16 7 C -0.11 -1.11 5.02 -26.63 -0.13 -1.24 16 8 C -0.11 -1.33 5.94 -26.64 -0.16 -1.49 16 9 C 0.05 0.73 5.29 -3.84 -0.02 0.71 16 10 N -0.53 -8.09 4.54 -234.70 -1.07 -9.15 16 11 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 12 C -0.10 -1.98 5.09 -26.73 -0.14 -2.12 16 13 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 14 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 18 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 C 0.04 0.55 3.77 -3.85 -0.01 0.54 16 23 C 0.03 0.31 4.36 -3.75 -0.02 0.29 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.84 6.48 -51.93 -0.34 0.50 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.08 7.80 -51.93 -0.40 0.68 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.30 6.22 -51.93 -0.32 0.97 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.07 1.15 7.98 -51.93 -0.41 0.73 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.05 1.10 6.44 -51.93 -0.33 0.76 16 41 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.21 6.00 -51.93 -0.31 0.90 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -31.77 350.98 -10.19 -41.97 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.82 Total: -3.36 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.30 Total: -13.19 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.35 Total: -43.26 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.34 Total: -5.00 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.77 -10.19 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.158 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds