Wall clock time and date at job start Tue Mar 31 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47018 * 111.00089 * 2 1 4 4 C 1.53092 * 109.29737 * 177.61687 * 3 2 1 5 5 O 1.43036 * 109.24340 * 56.85683 * 4 3 2 6 6 C 1.42958 * 113.71396 * 301.39903 * 5 4 3 7 7 C 1.53046 * 109.49629 * 178.66732 * 6 5 4 8 8 C 1.53135 * 109.15069 * 62.40968 * 7 6 5 9 9 C 1.53040 * 109.30586 * 57.55276 * 8 7 6 10 10 N 1.46844 * 109.55067 * 300.87909 * 9 8 7 11 11 C 1.46903 * 110.99486 * 185.80271 * 10 9 8 12 12 C 1.52992 * 109.47140 * 45.77132 * 11 10 9 13 13 C 1.52996 * 109.47378 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47783 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99290 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00508 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99788 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99963 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47411 * 89.99455 * 18 16 14 20 20 H 1.48503 * 109.46933 * 209.99967 * 18 16 14 21 21 H 1.48502 * 109.46925 * 329.99252 * 18 16 14 22 22 C 1.46859 * 111.21895 * 61.69674 * 10 9 8 23 23 C 1.47034 * 110.99899 * 236.37830 * 2 1 3 24 24 H 1.09000 * 109.47097 * 183.62633 * 1 2 3 25 25 H 1.09002 * 109.46938 * 303.62211 * 1 2 3 26 26 H 1.09000 * 109.47150 * 63.61974 * 1 2 3 27 27 H 1.08995 * 109.50017 * 297.56933 * 3 2 1 28 28 H 1.09005 * 109.49763 * 57.64050 * 3 2 1 29 29 H 1.08993 * 109.50971 * 176.78153 * 4 3 2 30 30 H 1.08994 * 109.51171 * 296.87871 * 4 3 2 31 31 H 1.09000 * 109.52375 * 302.51182 * 7 6 5 32 32 H 1.08995 * 109.58186 * 182.34677 * 7 6 5 33 33 H 1.09002 * 109.50503 * 177.51530 * 8 7 6 34 34 H 1.09003 * 109.50641 * 297.59801 * 8 7 6 35 35 H 1.09003 * 109.45272 * 60.85812 * 9 8 7 36 36 H 1.08992 * 109.45970 * 180.80774 * 9 8 7 37 37 H 1.09004 * 109.47075 * 165.77052 * 11 10 9 38 38 H 1.09002 * 109.47129 * 285.76703 * 11 10 9 39 39 H 1.09004 * 109.47071 * 299.99922 * 12 11 10 40 40 H 1.09002 * 109.47460 * 59.99773 * 12 11 10 41 41 H 1.09004 * 109.46801 * 299.99897 * 13 12 11 42 42 H 1.09002 * 109.47640 * 59.99640 * 13 12 11 43 43 H 0.96998 * 119.99862 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.47136 * 178.32504 * 22 10 9 45 45 H 1.09008 * 109.45995 * 58.33799 * 22 10 9 46 46 H 1.09000 * 109.50985 * 62.37652 * 23 2 1 47 47 H 1.08997 * 109.50786 * 302.23479 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3275 0.0601 5 8 4.0176 0.5588 -1.0410 6 6 3.5244 -0.7827 -1.0721 7 6 4.0832 -1.5040 -2.3008 8 6 5.6091 -1.5731 -2.1919 9 6 5.9919 -2.2872 -0.8935 10 7 5.4337 -1.5571 0.2518 11 6 5.8956 -2.1357 1.5206 12 6 7.4025 -2.3894 1.4467 13 6 7.8835 -2.9926 2.7679 14 6 9.3678 -3.2432 2.6951 15 1 9.9133 -2.9972 1.7960 16 6 10.0292 -3.7865 3.7760 17 7 9.3648 -4.0855 4.8709 18 14 11.8691 -4.0963 3.6858 19 1 12.5977 -2.8926 4.1605 20 1 12.2182 -5.2569 4.5440 21 1 12.2539 -4.3860 2.2811 22 6 3.9667 -1.5189 0.1939 23 6 1.9959 -0.7601 -1.1431 24 1 -0.3633 -1.0256 0.0650 25 1 -0.3633 0.5690 0.8558 26 1 -0.3633 0.4566 -0.9206 27 1 1.6824 1.8826 -0.9108 28 1 1.6128 1.9093 0.8680 29 1 3.9215 2.3411 0.0026 30 1 3.8391 0.8662 0.9963 31 1 3.8068 -0.9564 -3.2018 32 1 3.6753 -2.5136 -2.3486 33 1 6.0101 -2.1246 -3.0424 34 1 6.0198 -0.5634 -2.1866 35 1 5.5932 -3.3016 -0.9060 36 1 7.0777 -2.3251 -0.8065 37 1 5.6833 -1.4425 2.3346 38 1 5.3769 -3.0773 1.7007 39 1 7.6148 -3.0826 0.6327 40 1 7.9212 -1.4478 1.2667 41 1 7.6712 -2.2998 3.5822 42 1 7.3649 -3.9344 2.9477 43 1 9.8301 -4.4681 5.6312 44 1 3.5820 -0.9976 1.0704 45 1 3.5774 -2.5369 0.1768 46 1 1.6816 -0.2847 -2.0722 47 1 1.6147 -1.7806 -1.1083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277948120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:54 Heat of formation + Delta-G solvation = -42.768899 kcal Electronic energy + Delta-G solvation = -23567.437229 eV Core-core repulsion = 20363.748516 eV Total energy + Delta-G solvation = -3203.688714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56156 -37.84249 -35.71364 -34.43059 -32.96778 -31.24910 -30.88394 -29.26141 -26.99504 -26.47048 -24.33506 -23.97323 -23.16914 -21.76985 -20.77078 -19.35431 -19.22203 -16.62423 -16.27155 -16.09108 -15.69861 -15.29723 -14.98854 -14.83662 -14.56340 -14.31907 -14.18512 -13.74535 -13.40327 -12.93925 -12.79730 -12.61130 -12.37771 -12.18986 -12.13753 -11.92762 -11.66712 -11.42112 -11.32751 -10.98260 -10.82616 -10.71419 -10.64620 -10.49669 -10.25913 -10.00419 -9.56733 -9.49141 -9.24971 -8.98056 -8.60103 -8.29638 -7.85649 -5.95147 -3.96997 3.35406 3.41225 3.44889 3.56371 3.70204 4.24675 4.50632 4.61215 4.71472 4.77924 4.81930 4.99561 5.08419 5.14164 5.16050 5.25249 5.36740 5.40623 5.41559 5.52948 5.55485 5.57066 5.60149 5.73805 5.76859 5.81599 5.87188 5.90929 5.97565 6.05286 6.22160 6.28290 6.39132 6.49298 6.67334 6.67847 6.79075 6.86515 7.16662 7.25591 7.53227 7.56173 7.73704 7.89351 8.05681 8.49100 9.10264 9.66708 11.16351 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003361 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.655203 B = 8329.197850 C = 8745.322492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.017 3.983 4 C 0.063 3.937 5 O -0.357 6.357 6 C 0.128 3.872 7 C -0.105 4.105 8 C -0.112 4.112 9 C 0.048 3.952 10 N -0.530 5.530 11 C 0.058 3.942 12 C -0.111 4.111 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.042 3.958 23 C 0.031 3.969 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.086 0.914 45 H 0.033 0.967 46 H 0.042 0.958 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.100 8.609 -13.637 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.111 4.111 4 C -0.014 4.014 5 O -0.275 6.275 6 C 0.088 3.912 7 C -0.143 4.143 8 C -0.150 4.150 9 C -0.080 4.080 10 N -0.254 5.254 11 C -0.069 4.069 12 C -0.149 4.149 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.086 4.086 23 C -0.097 4.097 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.625 8.856 -13.186 23.726 hybrid contribution 0.053 -0.750 -0.324 0.819 sum -17.571 8.106 -13.510 23.600 Atomic orbital electron populations 1.22380 0.87067 1.02371 1.00487 1.62190 1.07958 1.13799 1.42442 1.22860 0.97428 0.89491 1.01317 1.22606 0.90961 0.96336 0.91544 1.88026 1.70068 1.22183 1.47231 1.21450 0.90252 0.83754 0.95774 1.21548 0.97261 0.99355 0.96179 1.21522 0.94413 1.02212 0.96808 1.22219 1.01339 0.94240 0.90153 1.61938 1.06796 1.53965 1.02713 1.22259 0.97632 0.96854 0.90131 1.21782 0.91799 1.00443 1.00838 1.19069 0.95701 0.95644 0.91130 1.21259 0.93654 1.40980 0.99686 0.92715 1.25027 0.98221 0.95768 0.95514 1.69968 1.35754 1.43848 1.04053 0.86604 0.85776 0.77750 0.77937 1.20668 1.21296 1.19895 1.22493 0.88925 0.98649 0.98572 1.22775 0.95851 0.99219 0.91884 0.91221 0.91188 0.95724 0.94311 0.89818 0.88710 0.91490 0.91438 0.91027 0.91805 0.90334 0.95572 0.89323 0.91285 0.95613 0.93195 0.92548 0.96592 0.96869 0.93079 0.89537 0.94841 0.93937 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 60.07 0.58 0.77 16 2 N -0.54 -5.47 4.37 -242.62 -1.06 -6.53 16 3 C 0.02 0.16 5.66 -3.71 -0.02 0.14 16 4 C 0.06 0.71 6.61 37.21 0.25 0.95 16 5 O -0.36 -4.76 9.62 -35.23 -0.34 -5.10 16 6 C 0.13 1.54 0.70 -90.59 -0.06 1.48 16 7 C -0.11 -1.17 5.02 -26.64 -0.13 -1.30 16 8 C -0.11 -1.39 5.94 -26.64 -0.16 -1.55 16 9 C 0.05 0.72 4.85 -3.83 -0.02 0.70 16 10 N -0.53 -8.50 4.69 -234.69 -1.10 -9.60 16 11 C 0.06 1.07 5.27 -3.83 -0.02 1.05 16 12 C -0.11 -2.37 4.40 -26.74 -0.12 -2.49 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.04 0.59 3.73 -3.85 -0.01 0.57 16 23 C 0.03 0.32 4.36 -3.74 -0.02 0.31 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.85 6.48 -51.93 -0.34 0.52 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 1.43 5.81 -51.93 -0.30 1.13 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.05 1.04 6.21 -51.93 -0.32 0.72 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.27 6.09 -51.93 -0.32 0.95 16 45 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -31.18 353.45 -10.58 -41.76 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -8.83 Total: -3.48 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.29 Total: -12.68 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -1.43 Total: -42.84 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.34 Total: -5.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.18 -10.58 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.011 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds