Wall clock time and date at job start Tue Mar 31 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46975 * 2 1 4 4 C 1.52999 * 109.47156 * 240.00005 * 2 1 3 5 5 N 1.46896 * 109.47452 * 120.00087 * 2 1 3 6 6 C 1.46960 * 111.00078 * 59.99823 * 5 2 1 7 7 C 1.53047 * 109.36800 * 183.19209 * 6 5 2 8 8 N 1.46966 * 109.36041 * 301.59891 * 7 6 5 9 9 C 1.46902 * 110.99600 * 183.18507 * 8 7 6 10 10 C 1.53005 * 109.46665 * 148.64708 * 9 8 7 11 11 C 1.52996 * 109.46821 * 67.49587 * 10 9 8 12 12 C 1.52998 * 109.47324 * 307.49517 * 10 9 8 13 13 C 1.53005 * 109.47025 * 187.49586 * 10 9 8 14 14 C 1.50694 * 109.46979 * 180.02562 * 13 10 9 15 15 H 1.07995 * 120.00188 * 359.97438 * 14 13 10 16 16 C 1.37879 * 119.99987 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46615 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46997 * 119.99695 * 18 16 14 21 21 H 1.48499 * 109.47190 * 240.00183 * 18 16 14 22 22 C 1.46957 * 110.88154 * 59.32245 * 8 7 6 23 23 C 1.46953 * 111.00477 * 183.79825 * 5 2 1 24 24 H 1.09002 * 109.46546 * 299.99965 * 1 2 3 25 25 H 1.08993 * 109.47330 * 59.99808 * 1 2 3 26 26 H 1.08998 * 109.46980 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46931 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47242 * 300.00044 * 3 2 1 29 29 H 1.09002 * 109.47455 * 60.00592 * 3 2 1 30 30 H 1.08995 * 109.47474 * 300.00150 * 4 2 1 31 31 H 1.09002 * 109.47013 * 59.99985 * 4 2 1 32 32 H 1.09002 * 109.47424 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.48771 * 63.22281 * 6 5 2 34 34 H 1.09000 * 109.50380 * 303.17171 * 6 5 2 35 35 H 1.08991 * 109.49123 * 181.63148 * 7 6 5 36 36 H 1.09002 * 109.48996 * 61.55992 * 7 6 5 37 37 H 1.09001 * 109.47235 * 28.65115 * 9 8 7 38 38 H 1.08996 * 109.47370 * 268.64583 * 9 8 7 39 39 H 1.09012 * 109.46957 * 150.95937 * 11 10 9 40 40 H 1.08994 * 109.47378 * 270.95608 * 11 10 9 41 41 H 1.08998 * 109.47179 * 30.96287 * 11 10 9 42 42 H 1.09004 * 109.47129 * 299.99810 * 12 10 9 43 43 H 1.09001 * 109.47091 * 60.00144 * 12 10 9 44 44 H 1.08993 * 109.46869 * 180.02562 * 12 10 9 45 45 H 1.09003 * 109.46949 * 300.00442 * 13 10 9 46 46 H 1.08999 * 109.47194 * 59.99515 * 13 10 9 47 47 H 0.96993 * 120.00569 * 179.97438 * 17 16 14 48 48 H 1.09004 * 109.48963 * 60.63987 * 22 8 7 49 49 H 1.08995 * 109.49106 * 180.70864 * 22 8 7 50 50 H 1.08997 * 109.48748 * 296.78096 * 23 5 2 51 51 H 1.09003 * 109.48819 * 56.82102 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.5485 -2.0841 1.2334 7 6 2.0124 -2.7454 2.5333 8 7 3.4787 -2.6867 2.6135 9 6 3.9684 -3.3792 3.8130 10 6 5.3441 -3.9844 3.5265 11 6 6.3641 -2.8612 3.3291 12 6 5.2723 -4.8368 2.2580 13 6 5.7717 -4.8602 4.7060 14 6 7.1270 -5.4557 4.4241 15 1 7.6326 -5.2322 3.4963 16 6 7.7215 -6.2858 5.3506 17 7 7.1059 -6.5576 6.4807 18 14 9.4012 -7.0246 5.0010 19 1 9.8757 -6.5672 3.6703 20 1 10.3612 -6.5882 6.0464 21 1 9.3014 -8.5063 5.0079 22 6 3.9499 -1.2952 2.5796 23 6 3.4859 -0.6339 1.2797 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 1.9586 -2.6277 0.3823 34 1 0.4597 -2.1009 1.1852 35 1 1.6888 -3.7860 2.5475 36 1 1.5804 -2.2181 3.3839 37 1 3.2719 -4.1725 4.0843 38 1 4.0481 -2.6687 4.6356 39 1 7.3513 -3.2093 3.6336 40 1 6.3887 -2.5732 2.2782 41 1 6.0793 -2.0011 3.9351 42 1 4.5456 -5.6370 2.3987 43 1 4.9677 -4.2129 1.4178 44 1 6.2522 -5.2682 2.0543 45 1 5.8228 -4.2529 5.6097 46 1 5.0449 -5.6602 4.8467 47 1 7.5239 -7.1418 7.1324 48 1 3.5397 -0.7515 3.4307 49 1 5.0387 -1.2786 2.6276 50 1 3.9180 -1.1611 0.4291 51 1 3.8096 0.4068 1.2650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319705357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:14 Heat of formation + Delta-G solvation = -1.455527 kcal Electronic energy + Delta-G solvation = -24147.011157 eV Core-core repulsion = 21080.947020 eV Total energy + Delta-G solvation = -3066.064137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99738 -37.82750 -35.36580 -32.56549 -31.61050 -31.08980 -27.60863 -27.53725 -27.20464 -26.68878 -26.18700 -24.14074 -22.97572 -22.28154 -20.21728 -18.73376 -17.86053 -16.36035 -16.15250 -15.16204 -14.93887 -14.80394 -14.68049 -14.45843 -14.28515 -13.81469 -13.57750 -13.12029 -12.87730 -12.67630 -12.55649 -12.17380 -12.07836 -12.00448 -11.94625 -11.83664 -11.54311 -11.31868 -11.19368 -10.93502 -10.89804 -10.76408 -10.69103 -10.53739 -10.42957 -10.26869 -10.21286 -9.87235 -9.57209 -8.92800 -8.81611 -8.30205 -8.28630 -7.85915 -5.93305 -3.92853 3.34251 3.42098 3.45823 3.77669 4.22617 4.52221 4.59876 4.72302 4.92346 5.01107 5.17956 5.28915 5.35805 5.38925 5.42446 5.46715 5.49136 5.52221 5.58378 5.66395 5.68699 5.74096 5.76102 5.81023 5.86387 5.89724 5.99510 6.07781 6.09744 6.11485 6.20239 6.23235 6.34808 6.39462 6.60266 6.77492 6.84354 6.92815 7.05697 7.06886 7.29903 7.31085 7.36884 7.47846 7.57509 7.76226 7.91762 8.07626 8.52845 9.13038 9.69588 11.18415 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038744 B = 0.003384 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.515892 B = 8271.971713 C = 8443.440081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.100 3.900 3 C -0.140 4.140 4 C -0.181 4.181 5 N -0.527 5.527 6 C 0.054 3.946 7 C 0.057 3.943 8 N -0.530 5.530 9 C 0.066 3.934 10 C -0.052 4.052 11 C -0.132 4.132 12 C -0.111 4.111 13 C 0.033 3.967 14 C -0.504 4.504 15 H 0.060 0.940 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.047 3.953 23 C 0.053 3.947 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.012 0.988 46 H 0.013 0.987 47 H 0.258 0.742 48 H 0.033 0.967 49 H 0.094 0.906 50 H 0.043 0.957 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 13.827 -13.035 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 C -0.198 4.198 4 C -0.239 4.239 5 N -0.252 5.252 6 C -0.074 4.074 7 C -0.072 4.072 8 N -0.255 5.255 9 C -0.061 4.061 10 C -0.052 4.052 11 C -0.189 4.189 12 C -0.169 4.169 13 C -0.004 4.004 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.081 4.081 23 C -0.075 4.075 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.030 0.970 46 H 0.031 0.969 47 H 0.067 0.933 48 H 0.052 0.948 49 H 0.112 0.888 50 H 0.062 0.938 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.329 13.735 -12.870 22.501 hybrid contribution 0.889 -0.549 0.005 1.044 sum -11.440 13.187 -12.864 21.685 Atomic orbital electron populations 1.21879 0.93910 1.01963 1.01852 1.21050 0.95284 0.94264 0.88306 1.21911 1.01185 0.94793 1.01899 1.22484 1.01785 1.01153 0.98507 1.62422 1.10440 1.14885 1.37500 1.22225 0.99528 0.87972 0.97627 1.22173 0.88796 0.99887 0.96330 1.62177 1.08478 1.14006 1.40802 1.22355 0.98010 0.96700 0.89023 1.20565 0.91334 0.95342 0.97981 1.21997 1.01081 0.97043 0.98809 1.21574 1.00665 0.98152 0.96461 1.19151 0.96067 0.93628 0.91602 1.21277 1.02697 1.27342 1.02922 0.92213 1.25020 0.97527 0.96827 0.95273 1.69979 1.38187 1.37391 1.08241 0.86621 0.84721 0.78969 0.78212 1.19769 1.21212 1.21202 1.22496 1.01475 0.88222 0.95956 1.22261 0.87247 1.00122 0.97827 0.91915 0.92482 0.92511 0.92378 0.92455 0.91883 0.92248 0.92391 0.92266 0.93765 0.90625 0.90623 0.94703 0.91906 0.94858 0.91224 0.94334 0.94695 0.94636 0.93746 0.93003 0.96978 0.96852 0.93264 0.94836 0.88825 0.93848 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.25 37.16 0.31 -0.83 16 2 C 0.10 0.93 0.71 -131.60 -0.09 0.84 16 3 C -0.14 -1.18 8.12 37.16 0.30 -0.87 16 4 C -0.18 -1.64 7.78 37.16 0.29 -1.35 16 5 N -0.53 -5.92 4.53 -218.82 -0.99 -6.91 16 6 C 0.05 0.63 4.82 -3.77 -0.02 0.61 16 7 C 0.06 0.75 5.48 -3.76 -0.02 0.73 16 8 N -0.53 -8.01 3.47 -234.46 -0.81 -8.82 16 9 C 0.07 1.17 4.20 -3.82 -0.02 1.16 16 10 C -0.05 -1.04 0.61 -154.51 -0.09 -1.14 16 11 C -0.13 -2.52 7.20 37.16 0.27 -2.25 16 12 C -0.11 -2.20 7.82 37.16 0.29 -1.91 16 13 C 0.03 0.84 4.03 -27.88 -0.11 0.73 16 14 C -0.50 -13.87 7.24 -34.44 -0.25 -14.12 16 15 H 0.06 1.61 6.02 -52.49 -0.32 1.29 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.05 0.65 5.12 -3.77 -0.02 0.63 16 23 C 0.05 0.63 4.83 -3.77 -0.02 0.62 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.47 6.33 -51.93 -0.33 0.14 16 27 H 0.06 0.50 6.28 -51.93 -0.33 0.17 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 6.48 -51.93 -0.34 0.23 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.04 0.54 6.48 -51.93 -0.34 0.21 16 34 H 0.08 0.77 6.14 -51.93 -0.32 0.46 16 35 H 0.08 0.99 7.98 -51.93 -0.41 0.57 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.13 7.65 -51.93 -0.40 0.74 16 38 H 0.03 0.60 7.60 -51.93 -0.39 0.21 16 39 H 0.07 1.49 6.27 -51.92 -0.33 1.16 16 40 H 0.04 0.66 7.10 -51.93 -0.37 0.30 16 41 H 0.03 0.61 6.61 -51.93 -0.34 0.27 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.04 0.80 7.39 -51.93 -0.38 0.42 16 44 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 49 H 0.09 1.36 4.42 -51.93 -0.23 1.13 16 50 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 51 H 0.08 0.83 6.06 -51.93 -0.31 0.51 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -28.91 362.07 -9.44 -38.35 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -9.52 Total: -2.77 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 0.72 Total: -15.73 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -1.07 Total: -42.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.91 -9.44 -38.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319705357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds