Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46837 * 111.00067 * 2 1 4 4 C 1.53042 * 109.52487 * 185.84168 * 3 2 1 5 5 C 1.53124 * 109.27326 * 300.82113 * 4 3 2 6 6 C 1.53002 * 109.51905 * 177.55760 * 5 4 3 7 7 N 1.46897 * 109.47021 * 65.32015 * 6 5 4 8 8 C 1.46906 * 110.99748 * 184.66457 * 7 6 5 9 9 C 1.50706 * 109.46806 * 190.52968 * 8 7 6 10 10 H 1.08004 * 119.99895 * 4.68677 * 9 8 7 11 11 C 1.37881 * 119.99646 * 184.68528 * 9 8 7 12 12 N 1.31511 * 120.00253 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99727 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47125 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47143 * 119.99916 * 13 11 9 16 16 H 1.48497 * 109.46886 * 240.00375 * 13 11 9 17 17 C 1.46890 * 111.00273 * 60.70729 * 7 6 5 18 18 C 1.52999 * 109.47035 * 52.30884 * 17 7 6 19 19 C 1.52997 * 109.47263 * 35.56940 * 18 17 7 20 20 C 1.53001 * 109.47173 * 155.56715 * 18 17 7 21 21 C 1.53000 * 109.47328 * 275.56644 * 18 17 7 22 22 C 1.53120 * 109.16042 * 57.65630 * 5 4 3 23 23 C 1.46847 * 110.99726 * 124.21539 * 2 1 3 24 24 H 1.09001 * 109.46642 * 295.79049 * 1 2 3 25 25 H 1.09002 * 109.46959 * 175.78711 * 1 2 3 26 26 H 1.08996 * 109.47225 * 55.78753 * 1 2 3 27 27 H 1.09000 * 109.46381 * 305.85688 * 3 2 1 28 28 H 1.08998 * 109.46372 * 65.82869 * 3 2 1 29 29 H 1.09000 * 109.50635 * 180.88088 * 4 3 2 30 30 H 1.08994 * 109.53325 * 60.78138 * 4 3 2 31 31 H 1.08991 * 109.52313 * 297.74439 * 5 4 3 32 32 H 1.09004 * 109.46965 * 185.31982 * 6 5 4 33 33 H 1.09005 * 109.47255 * 305.31881 * 6 5 4 34 34 H 1.08996 * 109.47116 * 310.52370 * 8 7 6 35 35 H 1.09000 * 109.47461 * 70.53383 * 8 7 6 36 36 H 0.96997 * 120.00256 * 180.02562 * 12 11 9 37 37 H 1.09006 * 109.47250 * 172.30906 * 17 7 6 38 38 H 1.08999 * 109.47301 * 292.31089 * 17 7 6 39 39 H 1.09001 * 109.47421 * 58.27586 * 19 18 17 40 40 H 1.09004 * 109.47425 * 178.27944 * 19 18 17 41 41 H 1.09002 * 109.47044 * 298.27492 * 19 18 17 42 42 H 1.08999 * 109.47210 * 59.99792 * 20 18 17 43 43 H 1.09004 * 109.47358 * 179.97438 * 20 18 17 44 44 H 1.09003 * 109.47107 * 300.00067 * 20 18 17 45 45 H 1.09002 * 109.47047 * 84.44903 * 21 18 17 46 46 H 1.08997 * 109.47216 * 204.45251 * 21 18 17 47 47 H 1.09003 * 109.46730 * 324.45262 * 21 18 17 48 48 H 1.08999 * 109.50458 * 182.40087 * 22 5 4 49 49 H 1.08996 * 109.50577 * 62.27939 * 22 5 4 50 50 H 1.08996 * 109.45932 * 294.16857 * 23 2 1 51 51 H 1.08999 * 109.46815 * 54.14167 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5368 1.0144 6 6 5.6361 0.4448 0.8404 7 7 6.2243 1.7860 0.9541 8 6 7.6677 1.7526 0.6827 9 6 8.2799 3.0779 1.0568 10 1 7.6744 3.8392 1.5261 11 6 9.6130 3.3185 0.7999 12 7 10.3502 2.3916 0.2280 13 14 10.3718 4.9615 1.2630 14 1 9.3379 5.8259 1.8867 15 1 11.4802 4.7409 2.2263 16 1 10.9001 5.6239 0.0435 17 6 5.9501 2.3711 2.2733 18 6 6.3784 1.3891 3.3657 19 6 7.6356 0.6423 2.9157 20 6 6.6758 2.1580 4.6546 21 6 5.2520 0.3852 3.6192 22 6 3.5181 -0.8716 1.0207 23 6 1.9952 -0.7709 1.1337 24 1 -0.3633 0.4471 0.9253 25 1 -0.3633 -1.0249 -0.0755 26 1 -0.3633 0.5778 -0.8498 27 1 1.5634 1.9257 -0.8329 28 1 1.7326 1.8607 0.9376 29 1 3.9100 2.3511 -0.1311 30 1 3.7819 0.8571 -1.0907 31 1 3.8888 1.0353 1.9559 32 1 6.0520 -0.2011 1.6139 33 1 5.8649 0.0297 -0.1412 34 1 8.1298 0.9600 1.2711 35 1 7.8337 1.5622 -0.3776 36 1 11.2881 2.5607 0.0476 37 1 6.5083 3.3011 2.3815 38 1 4.8833 2.5748 2.3658 39 1 8.4288 1.3597 2.7058 40 1 7.9583 -0.0352 3.7064 41 1 7.4153 0.0701 2.0145 42 1 5.7802 2.6901 4.9751 43 1 6.9805 1.4584 5.4330 44 1 7.4783 2.8733 4.4740 45 1 5.3220 -0.4292 2.8980 46 1 5.3424 -0.0149 4.6290 47 1 4.2891 0.8845 3.5110 48 1 3.9099 -1.4305 1.8706 49 1 3.7813 -1.3837 0.0952 50 1 1.7325 -0.2710 2.0659 51 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333641047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = 50.038698 kcal Electronic energy + Delta-G solvation = -24991.655481 eV Core-core repulsion = 21927.824301 eV Total energy + Delta-G solvation = -3063.831180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06371 -38.31441 -34.22491 -33.56611 -31.96982 -30.67353 -28.66421 -27.71860 -26.56137 -26.04146 -25.27174 -23.53554 -22.92401 -21.48786 -19.92511 -19.48884 -18.15529 -16.52674 -15.73092 -15.29959 -15.00459 -14.93673 -14.56428 -14.40103 -13.87791 -13.74377 -13.36559 -13.21557 -12.83340 -12.49616 -12.32554 -12.29162 -12.00964 -11.97943 -11.65882 -11.25026 -11.21122 -11.06798 -11.01496 -10.89366 -10.73249 -10.68921 -10.42361 -10.35704 -10.22998 -10.08754 -9.79886 -9.60144 -9.46567 -9.36405 -8.78624 -8.40111 -8.31697 -6.71120 -6.00008 -3.98624 3.30783 3.39271 3.42307 3.96778 4.44591 4.89891 4.98871 5.04509 5.15772 5.29180 5.34238 5.37190 5.40950 5.42955 5.47606 5.56932 5.58999 5.69454 5.73201 5.75205 5.89907 5.93821 6.02709 6.06790 6.15655 6.17345 6.21614 6.25091 6.27732 6.31477 6.39487 6.42745 6.56288 6.59145 6.64944 6.74457 6.83726 6.86683 6.94354 7.04976 7.10770 7.14952 7.34934 7.53942 7.61142 7.83970 8.17977 8.38838 8.70869 9.09414 9.63793 11.10942 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022721 B = 0.004792 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.053368 B = 5841.131258 C = 6335.289232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.055 3.945 4 C -0.101 4.101 5 C -0.092 4.092 6 C 0.039 3.961 7 N -0.529 5.529 8 C 0.145 3.855 9 C -0.505 4.505 10 H 0.065 0.935 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.065 3.935 18 C -0.093 4.093 19 C -0.164 4.164 20 C -0.134 4.134 21 C -0.153 4.153 22 C -0.113 4.113 23 C 0.059 3.941 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.024 0.976 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.029 0.971 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 -5.514 4.300 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.139 4.139 5 C -0.111 4.111 6 C -0.089 4.089 7 N -0.251 5.251 8 C 0.021 3.979 9 C -0.543 4.543 10 H 0.083 0.917 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.064 4.064 18 C -0.094 4.094 19 C -0.220 4.220 20 C -0.192 4.192 21 C -0.209 4.209 22 C -0.151 4.151 23 C -0.068 4.068 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.047 0.953 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.176 -5.462 3.421 16.487 hybrid contribution 0.569 0.777 1.535 1.812 sum -14.607 -4.685 4.956 16.121 Atomic orbital electron populations 1.22336 0.88016 1.01793 1.00159 1.61944 1.06888 1.14509 1.43480 1.22181 0.97089 0.88203 0.99772 1.21520 0.91826 1.01802 0.98733 1.21481 0.95406 0.94796 0.99392 1.22579 0.92931 0.92710 1.00656 1.62289 1.17102 1.18665 1.27077 1.20832 0.81336 0.98453 0.97294 1.21340 0.94102 1.00104 1.38762 0.91724 1.24941 0.97398 0.96537 0.95461 1.69963 1.07173 1.33317 1.43051 0.86597 0.79235 0.84430 0.78103 1.19790 1.21241 1.21147 1.22384 0.98631 0.98520 0.86820 1.21165 0.95435 0.96307 0.96533 1.22961 0.98728 1.00861 0.99433 1.21829 1.00887 0.99850 0.96595 1.22576 0.98133 0.99639 1.00562 1.21661 0.93525 0.97876 1.02083 1.22056 0.96162 0.97527 0.91103 0.96084 0.91710 0.91592 0.91293 0.95428 0.90110 0.91757 0.90450 0.92976 0.92323 0.94056 0.95917 0.93135 0.89101 0.93481 0.88408 0.95700 0.90655 0.93725 0.93874 0.92230 0.91467 0.94262 0.92943 0.91829 0.91295 0.95323 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.59 60.07 0.58 0.82 16 2 N -0.54 -6.57 4.91 -242.96 -1.19 -7.76 16 3 C 0.06 0.70 5.46 -3.84 -0.02 0.68 16 4 C -0.10 -1.47 5.24 -26.65 -0.14 -1.61 16 5 C -0.09 -1.32 1.11 -90.49 -0.10 -1.42 16 6 C 0.04 0.67 3.41 -3.82 -0.01 0.66 16 7 N -0.53 -10.67 4.42 -236.07 -1.04 -11.71 16 8 C 0.15 3.55 4.23 -4.97 -0.02 3.53 16 9 C -0.50 -13.33 7.33 -34.44 -0.25 -13.58 16 10 H 0.06 1.70 5.52 -52.48 -0.29 1.41 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.06 1.21 4.54 -3.83 -0.02 1.19 16 18 C -0.09 -1.56 0.77 -154.51 -0.12 -1.68 16 19 C -0.16 -3.14 6.17 37.16 0.23 -2.91 16 20 C -0.13 -2.12 8.22 37.16 0.31 -1.81 16 21 C -0.15 -2.19 7.18 37.16 0.27 -1.92 16 22 C -0.11 -1.41 5.27 -26.65 -0.14 -1.55 16 23 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.14 3.69 -51.93 -0.19 0.95 16 32 H 0.05 0.89 2.69 -51.93 -0.14 0.75 16 33 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 34 H 0.04 1.04 3.27 -60.81 -0.20 0.84 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.09 1.92 4.96 -51.93 -0.26 1.66 16 38 H 0.05 0.81 6.24 -51.93 -0.32 0.49 16 39 H 0.10 2.25 5.49 -51.93 -0.29 1.96 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 1.49 3.28 -51.93 -0.17 1.32 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 45 H 0.07 0.96 3.57 -51.93 -0.19 0.78 16 46 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 47 H 0.05 0.72 5.70 -51.93 -0.30 0.42 16 48 H 0.06 0.74 6.96 -51.93 -0.36 0.38 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -27.32 350.30 -9.79 -37.11 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.98 Total: 3.46 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 0.44 Total: -17.46 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -1.50 Total: -44.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.32 -9.79 -37.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333641047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.147 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds