Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46855 * 110.99706 * 2 1 4 4 C 1.53033 * 109.52408 * 185.83800 * 3 2 1 5 5 C 1.53112 * 109.27966 * 300.82611 * 4 3 2 6 6 C 1.53119 * 109.16487 * 57.65171 * 5 4 3 7 7 C 1.46845 * 111.00082 * 124.20802 * 2 1 3 8 8 H 1.08999 * 109.46257 * 294.16819 * 7 2 1 9 9 C 1.52997 * 109.46059 * 54.14832 * 7 2 1 10 10 N 1.46506 * 109.47162 * 54.56367 * 9 7 2 11 11 C 1.34774 * 119.99995 * 174.87079 * 10 9 7 12 12 O 1.21281 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00178 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47223 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47224 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47224 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47035 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99613 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99684 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00530 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47120 * 89.99993 * 21 19 17 23 23 H 1.48500 * 109.47156 * 210.00479 * 21 19 17 24 24 H 1.48500 * 109.46560 * 330.00237 * 21 19 17 25 25 H 1.08999 * 109.47608 * 289.64947 * 1 2 3 26 26 H 1.09003 * 109.47559 * 49.64867 * 1 2 3 27 27 H 1.09007 * 109.47059 * 169.64889 * 1 2 3 28 28 H 1.08999 * 109.46328 * 305.85960 * 3 2 1 29 29 H 1.08998 * 109.45831 * 65.83326 * 3 2 1 30 30 H 1.09010 * 109.49942 * 60.76424 * 4 3 2 31 31 H 1.08996 * 109.50608 * 180.87806 * 4 3 2 32 32 H 1.09002 * 109.52477 * 177.56008 * 5 4 3 33 33 H 1.09008 * 109.52351 * 297.67968 * 5 4 3 34 34 H 1.09002 * 109.50634 * 182.40747 * 6 5 4 35 35 H 1.08994 * 109.50168 * 62.28665 * 6 5 4 36 36 H 1.08998 * 109.47307 * 294.56419 * 9 7 2 37 37 H 1.09000 * 109.46754 * 174.56101 * 9 7 2 38 38 H 0.96993 * 120.00020 * 354.87224 * 10 9 7 39 39 H 1.08997 * 109.46901 * 59.99897 * 13 11 10 40 40 H 1.09002 * 109.46573 * 300.00222 * 13 11 10 41 41 H 1.08997 * 109.47447 * 60.00010 * 14 13 11 42 42 H 1.09000 * 109.46835 * 299.99597 * 14 13 11 43 43 H 1.09003 * 109.47335 * 59.99413 * 15 14 13 44 44 H 1.09002 * 109.46520 * 299.99969 * 15 14 13 45 45 H 1.09000 * 109.46835 * 299.99533 * 16 15 14 46 46 H 1.08994 * 109.46953 * 59.99845 * 16 15 14 47 47 H 0.97001 * 119.99797 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3344 -0.1467 5 6 4.1187 0.5371 1.0143 6 6 3.5181 -0.8713 1.0208 7 6 1.9952 -0.7707 1.1337 8 1 1.7326 -0.2707 2.0660 9 6 1.3891 -2.1755 1.1203 10 7 1.6307 -2.7992 -0.1831 11 6 1.2756 -4.0824 -0.3923 12 8 0.7556 -4.7206 0.4983 13 6 1.5247 -4.7241 -1.7329 14 6 1.0319 -6.1723 -1.7045 15 6 1.2853 -6.8241 -3.0653 16 6 0.7930 -8.2724 -3.0367 17 6 1.0421 -8.9142 -4.3774 18 1 1.5048 -8.3457 -5.1705 19 6 0.6783 -10.2267 -4.5915 20 7 0.8952 -10.7866 -5.7616 21 14 -0.1226 -11.2098 -3.2198 22 1 -1.5971 -11.0493 -3.2917 23 1 0.2272 -12.6451 -3.3701 24 1 0.3656 -10.7162 -1.9071 25 1 -0.3634 0.3456 0.9678 26 1 -0.3634 0.6654 -0.7832 27 1 -0.3633 -1.0110 -0.1847 28 1 1.5633 1.9258 -0.8329 29 1 1.7325 1.8608 0.9377 30 1 3.7812 0.8570 -1.0907 31 1 3.9097 2.3514 -0.1310 32 1 5.1997 0.4717 0.8905 33 1 3.8896 1.0362 1.9559 34 1 3.9099 -1.4302 1.8707 35 1 3.7814 -1.3834 0.0953 36 1 0.3158 -2.1098 1.2983 37 1 1.8510 -2.7779 1.9026 38 1 2.0463 -2.2887 -0.8955 39 1 2.5925 -4.7075 -1.9509 40 1 0.9876 -4.1730 -2.5049 41 1 -0.0360 -6.1885 -1.4867 42 1 1.5686 -6.7236 -0.9324 43 1 2.3533 -6.8079 -3.2828 44 1 0.7489 -6.2728 -3.8377 45 1 1.3298 -8.8234 -2.2644 46 1 -0.2748 -8.2890 -2.8192 47 1 0.6396 -11.7102 -5.9121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336225161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -66.286645 kcal Electronic energy + Delta-G solvation = -22207.820152 eV Core-core repulsion = 19003.111632 eV Total energy + Delta-G solvation = -3204.708520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27078 -39.05721 -35.21608 -34.71418 -33.90546 -32.55208 -31.58607 -30.01438 -27.56179 -26.63223 -25.33297 -23.37634 -22.28237 -21.58859 -20.31537 -19.96041 -19.73825 -16.93563 -16.63158 -16.42559 -15.97425 -15.68433 -15.35096 -14.81244 -14.68349 -14.47484 -14.13065 -13.87575 -13.60282 -13.43662 -12.90366 -12.60526 -12.59839 -12.37514 -12.13932 -12.08595 -12.00084 -11.70343 -11.61503 -11.15730 -11.05553 -10.84756 -10.69111 -10.67650 -10.47834 -9.89679 -9.75743 -9.59666 -9.35540 -9.07572 -9.05507 -8.79818 -8.45895 -5.97188 -3.94357 2.79576 3.16131 3.38140 3.44896 3.50275 3.51487 4.23631 4.29098 4.44975 4.53362 4.64721 4.76489 4.85709 4.98586 5.02169 5.05569 5.13635 5.21712 5.26607 5.33673 5.36527 5.39099 5.43520 5.47357 5.50888 5.52742 5.63583 5.70810 5.74168 5.88848 5.93649 6.10660 6.23253 6.37320 6.48713 6.61030 6.64962 6.75028 6.89119 7.04872 7.43302 7.56017 7.58517 7.88685 8.35343 8.62237 9.08099 9.66399 11.16370 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.002498 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.213345 B =11205.575088 C =11385.021482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.073 3.927 8 H 0.054 0.946 9 C 0.125 3.875 10 N -0.725 5.725 11 C 0.510 3.490 12 O -0.544 6.544 13 C -0.138 4.138 14 C -0.105 4.105 15 C -0.103 4.103 16 C -0.016 4.016 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 28.731 14.800 32.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.036 4.036 8 H 0.072 0.928 9 C 0.000 4.000 10 N -0.379 5.379 11 C 0.297 3.703 12 O -0.421 6.421 13 C -0.178 4.178 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.556 4.556 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.243 0.757 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.147 27.881 14.930 31.898 hybrid contribution -0.571 0.127 1.033 1.187 sum 3.576 28.008 15.963 32.436 Atomic orbital electron populations 1.22443 0.86918 1.03129 1.00272 1.61887 1.07899 1.13643 1.42805 1.22108 0.95692 0.88877 1.00494 1.21605 0.94309 1.00214 0.99507 1.21589 1.00196 0.95691 0.98483 1.21647 0.93163 0.97239 1.03059 1.21955 0.95658 0.93418 0.92553 0.92801 1.21336 1.00293 0.91693 0.86631 1.45965 1.64138 1.12770 1.15031 1.21070 0.77360 0.81152 0.90693 1.90691 1.42821 1.62884 1.45674 1.21747 1.03496 0.98705 0.93838 1.21468 1.01534 0.92001 0.99337 1.21476 1.00615 0.97781 0.94145 1.19580 0.95822 0.92320 0.97588 1.21196 1.40048 0.97034 0.97328 0.91106 1.25045 0.95455 0.97748 0.95417 1.69928 1.48565 1.13541 1.22590 0.86770 0.79995 0.79067 0.83451 1.20340 1.21492 1.18883 0.95600 0.91290 0.90637 0.90565 0.95009 0.90840 0.91543 0.91539 0.92343 0.91201 0.90675 0.91875 0.90962 0.75673 0.89127 0.89083 0.91901 0.91893 0.92869 0.92892 0.96634 0.97083 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.90 60.06 0.53 0.67 16 2 N -0.54 -3.67 4.10 -234.92 -0.96 -4.64 16 3 C 0.06 0.33 5.46 -3.83 -0.02 0.30 16 4 C -0.12 -0.63 6.09 -26.66 -0.16 -0.79 16 5 C -0.12 -0.66 6.00 -26.61 -0.16 -0.82 16 6 C -0.11 -0.73 5.26 -26.65 -0.14 -0.87 16 7 C 0.07 0.51 2.09 -67.72 -0.14 0.37 16 8 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 9 C 0.13 1.14 4.57 -4.04 -0.02 1.13 16 10 N -0.72 -7.29 4.96 -60.29 -0.30 -7.59 16 11 C 0.51 6.99 7.83 -10.99 -0.09 6.91 16 12 O -0.54 -9.74 15.98 5.56 0.09 -9.65 16 13 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 14 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 15 C -0.10 -2.07 5.15 -26.73 -0.14 -2.20 16 16 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 17 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 21 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 25 H 0.03 0.17 8.12 -51.93 -0.42 -0.25 16 26 H 0.07 0.42 7.98 -51.93 -0.41 0.01 16 27 H 0.07 0.61 6.62 -51.92 -0.34 0.27 16 28 H 0.08 0.41 8.01 -51.93 -0.42 0.00 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.53 7.31 -51.93 -0.38 0.15 16 36 H 0.06 0.63 6.80 -51.93 -0.35 0.27 16 37 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.41 3.46 7.43 -40.82 -0.30 3.16 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 46 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -33.61 365.19 -9.62 -43.23 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -8.90 Total: -3.38 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.16 Total: -13.51 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.49 Total: -40.15 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.61 -9.62 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336225161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.061 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds