Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46852 * 111.00102 * 2 1 4 4 C 1.53036 * 109.51587 * 174.15618 * 3 2 1 5 5 C 1.53110 * 109.27848 * 59.18959 * 4 3 2 6 6 C 1.53123 * 109.16157 * 302.34038 * 5 4 3 7 7 C 1.46853 * 110.99223 * 235.80085 * 2 1 3 8 8 H 1.09003 * 109.47195 * 65.83422 * 7 2 1 9 9 C 1.52997 * 109.45370 * 305.84971 * 7 2 1 10 10 N 1.46495 * 109.47122 * 305.54622 * 9 7 2 11 11 C 1.34783 * 119.99883 * 185.02656 * 10 9 7 12 12 O 1.21287 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00091 * 179.97438 * 11 10 9 14 14 C 1.53003 * 109.47034 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.46946 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46725 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47019 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99879 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00338 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00238 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47301 * 89.99630 * 21 19 17 23 23 H 1.48494 * 109.47051 * 209.99697 * 21 19 17 24 24 H 1.48503 * 109.46806 * 330.00010 * 21 19 17 25 25 H 1.08996 * 109.47261 * 66.47650 * 1 2 3 26 26 H 1.09000 * 109.46798 * 186.47250 * 1 2 3 27 27 H 1.08994 * 109.46972 * 306.46629 * 1 2 3 28 28 H 1.09000 * 109.45792 * 54.14538 * 3 2 1 29 29 H 1.08997 * 109.46620 * 294.17323 * 3 2 1 30 30 H 1.09003 * 109.50185 * 179.13238 * 4 3 2 31 31 H 1.08997 * 109.50328 * 299.20615 * 4 3 2 32 32 H 1.08995 * 109.52633 * 62.24895 * 5 4 3 33 33 H 1.08999 * 109.52646 * 182.37862 * 5 4 3 34 34 H 1.09003 * 109.50454 * 177.59581 * 6 5 4 35 35 H 1.08995 * 109.50241 * 297.67877 * 6 5 4 36 36 H 1.09006 * 109.46682 * 65.54637 * 9 7 2 37 37 H 1.09000 * 109.46852 * 185.54344 * 9 7 2 38 38 H 0.96999 * 120.00352 * 5.03181 * 10 9 7 39 39 H 1.08999 * 109.47292 * 299.99885 * 13 11 10 40 40 H 1.08997 * 109.47123 * 60.00561 * 13 11 10 41 41 H 1.08998 * 109.47246 * 300.00461 * 14 13 11 42 42 H 1.08997 * 109.46778 * 60.00264 * 14 13 11 43 43 H 1.09001 * 109.46960 * 300.00042 * 15 14 13 44 44 H 1.08995 * 109.46638 * 60.00250 * 15 14 13 45 45 H 1.09000 * 109.47700 * 300.00143 * 16 15 14 46 46 H 1.09004 * 109.47560 * 60.00572 * 16 15 14 47 47 H 0.96996 * 120.00539 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3340 0.1469 5 6 4.1187 0.5369 -1.0143 6 6 3.5180 -0.8715 -1.0210 7 6 1.9951 -0.7706 -1.1340 8 1 1.7324 -0.2705 -2.0662 9 6 1.3888 -2.1753 -1.1206 10 7 1.6283 -2.7981 0.1836 11 6 1.2708 -4.0805 0.3939 12 8 0.7512 -4.7190 -0.4969 13 6 1.5176 -4.7213 1.7352 14 6 1.0235 -6.1691 1.7074 15 6 1.2747 -6.8200 3.0692 16 6 0.7812 -8.2679 3.0411 17 6 1.0280 -8.9088 4.3825 18 1 1.4910 -8.3403 5.1756 19 6 0.6637 -10.2211 4.5971 20 7 0.1004 -10.9135 3.6313 21 14 0.9691 -11.0153 6.2600 22 1 -0.2129 -10.8044 7.1339 23 1 1.1970 -12.4714 6.0788 24 1 2.1658 -10.4014 6.8895 25 1 -0.3633 0.4101 -0.9422 26 1 -0.3633 -1.0211 0.1158 27 1 -0.3633 0.6108 0.8264 28 1 1.5634 1.9257 0.8330 29 1 1.7326 1.8609 -0.9376 30 1 3.9100 2.3510 0.1314 31 1 3.7812 0.8571 1.0910 32 1 3.8888 1.0355 -1.9558 33 1 5.1998 0.4721 -0.8910 34 1 3.9098 -1.4302 -1.8709 35 1 3.7817 -1.3840 -0.0958 36 1 0.3157 -2.1095 -1.3003 37 1 1.8517 -2.7783 -1.9017 38 1 2.0440 -2.2875 0.8959 39 1 2.5853 -4.7064 1.9541 40 1 0.9808 -4.1686 2.5062 41 1 -0.0441 -6.1845 1.4883 42 1 1.5606 -6.7215 0.9365 43 1 2.3425 -6.8046 3.2878 44 1 0.7379 -6.2676 3.8403 45 1 -0.2865 -8.2837 2.8223 46 1 1.3184 -8.8200 2.2699 47 1 -0.1555 -11.8369 3.7820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336225170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = -69.264429 kcal Electronic energy + Delta-G solvation = -22154.675501 eV Core-core repulsion = 18949.837855 eV Total energy + Delta-G solvation = -3204.837646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23054 -39.00058 -35.11684 -34.62177 -33.87591 -32.58233 -31.53060 -29.63161 -27.48026 -26.50377 -25.16670 -23.34932 -22.44287 -21.59789 -20.35289 -19.88328 -19.70668 -16.85610 -16.49495 -16.12108 -15.92393 -15.63341 -15.28244 -14.78650 -14.65522 -14.40939 -14.38397 -13.77376 -13.53454 -13.38303 -12.83090 -12.58319 -12.48839 -12.33061 -12.08611 -11.95873 -11.65997 -11.60586 -11.49207 -11.13484 -10.93903 -10.82040 -10.66172 -10.47894 -10.45076 -10.34252 -9.70815 -9.54985 -9.16190 -8.99980 -8.93138 -8.76975 -8.26563 -5.91365 -3.93667 2.86287 3.20848 3.36759 3.42595 3.45997 3.54090 4.26678 4.31747 4.47240 4.52360 4.66913 4.79482 4.88293 5.03411 5.07228 5.08627 5.15789 5.24853 5.29540 5.42400 5.43445 5.44645 5.49123 5.50991 5.53027 5.55546 5.67845 5.73237 5.76481 5.95544 5.97852 6.22273 6.39068 6.42986 6.61972 6.63811 6.68608 6.91641 7.09783 7.26489 7.64374 7.78843 7.95575 8.10670 8.41974 8.52573 9.14200 9.69728 11.20015 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033379 B = 0.002388 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.656122 B =11722.210866 C =11923.269311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.056 3.944 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.073 3.927 8 H 0.054 0.946 9 C 0.125 3.875 10 N -0.725 5.725 11 C 0.509 3.491 12 O -0.542 6.542 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 28.743 -9.781 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.036 4.036 8 H 0.072 0.928 9 C 0.000 4.000 10 N -0.380 5.380 11 C 0.297 3.703 12 O -0.419 6.419 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.557 4.557 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.243 0.757 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.859 27.882 -10.050 30.211 hybrid contribution -0.017 0.224 0.434 0.489 sum 5.841 28.106 -9.616 30.274 Atomic orbital electron populations 1.22449 0.86919 1.03095 1.00366 1.61888 1.07911 1.13613 1.42802 1.22101 0.95669 0.88909 1.00484 1.21602 0.94326 1.00191 0.99501 1.21587 1.00173 0.95722 0.98470 1.21646 0.93183 0.97203 1.03069 1.21953 0.95639 0.93442 0.92554 0.92814 1.21337 1.00299 0.91670 0.86679 1.45970 1.64216 1.12877 1.14931 1.21093 0.77362 0.81105 0.90756 1.90698 1.42706 1.62787 1.45666 1.21764 1.03333 0.98950 0.93716 1.21440 1.01549 0.91624 0.99449 1.21647 1.00023 0.99192 0.93915 1.19098 0.96483 0.89365 0.96809 1.21295 1.39523 0.96697 0.98229 0.92764 1.25044 0.95411 0.97471 0.96691 1.69973 1.41927 1.09571 1.32055 0.86613 0.78521 0.78510 0.84452 1.20727 1.21284 1.19927 0.95651 0.90556 0.91259 0.90597 0.95008 0.91574 0.90862 0.92349 0.91555 0.91194 0.90685 0.91863 0.90958 0.75736 0.89299 0.89249 0.91905 0.91900 0.93514 0.93511 0.96621 0.96605 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.99 60.06 0.54 0.68 16 2 N -0.54 -3.81 4.09 -234.92 -0.96 -4.77 16 3 C 0.06 0.34 5.46 -3.83 -0.02 0.32 16 4 C -0.12 -0.65 6.09 -26.66 -0.16 -0.81 16 5 C -0.12 -0.69 6.00 -26.61 -0.16 -0.85 16 6 C -0.11 -0.75 5.26 -26.64 -0.14 -0.89 16 7 C 0.07 0.53 2.11 -67.72 -0.14 0.39 16 8 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 9 C 0.12 1.19 4.56 -4.05 -0.02 1.17 16 10 N -0.73 -7.64 4.97 -60.30 -0.30 -7.94 16 11 C 0.51 7.33 7.83 -10.99 -0.09 7.24 16 12 O -0.54 -10.14 15.98 5.55 0.09 -10.06 16 13 C -0.14 -1.92 5.70 -27.89 -0.16 -2.07 16 14 C -0.10 -1.90 4.50 -26.72 -0.12 -2.02 16 15 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 16 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 17 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.88 13.29 55.43 0.74 -27.15 16 21 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.08 0.65 6.39 -51.93 -0.33 0.31 16 27 H 0.07 0.44 8.05 -51.93 -0.42 0.03 16 28 H 0.08 0.42 8.06 -51.93 -0.42 0.01 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.55 7.32 -51.93 -0.38 0.17 16 36 H 0.06 0.65 6.72 -51.93 -0.35 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.41 3.62 7.43 -40.82 -0.30 3.32 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -33.35 368.72 -9.98 -43.33 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.92 Total: -3.19 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.16 Total: -12.92 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.52 Total: -39.86 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.35 -9.98 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336225170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.930 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds