Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99581 * 2 1 4 4 C 1.50697 * 109.47077 * 293.95178 * 3 2 1 5 5 H 1.08000 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99702 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00453 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00128 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47081 * 89.99632 * 8 6 4 10 10 H 1.48493 * 109.47431 * 209.99965 * 8 6 4 11 11 H 1.48506 * 109.46768 * 329.99897 * 8 6 4 12 12 C 1.46897 * 111.00138 * 123.95294 * 2 1 3 13 13 C 1.52994 * 109.47169 * 164.01139 * 12 2 1 14 14 H 1.09006 * 109.47646 * 58.50962 * 13 12 2 15 15 O 1.42903 * 109.47234 * 298.51228 * 13 12 2 16 16 C 1.53001 * 109.47318 * 178.51144 * 13 12 2 17 17 N 1.46893 * 109.47255 * 184.99818 * 16 13 12 18 18 C 1.46899 * 111.00038 * 179.97438 * 17 16 13 19 19 C 1.53954 * 113.57853 * 105.75891 * 18 17 16 20 20 C 1.53165 * 86.69579 * 139.37359 * 19 18 17 21 21 C 1.52908 * 121.13600 * 100.81361 * 20 19 18 22 22 C 1.53948 * 86.77971 * 100.82833 * 21 20 19 23 23 C 1.52906 * 121.14173 * 209.37909 * 20 19 18 24 24 C 1.52912 * 88.03679 * 335.10131 * 20 19 18 25 25 H 1.09006 * 109.47043 * 301.52889 * 1 2 3 26 26 H 1.09004 * 109.47144 * 61.52814 * 1 2 3 27 27 H 1.09001 * 109.47309 * 181.53305 * 1 2 3 28 28 H 1.08997 * 109.47264 * 53.95713 * 3 2 1 29 29 H 1.09002 * 109.46404 * 173.95726 * 3 2 1 30 30 H 0.96999 * 120.00494 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47132 * 44.01191 * 12 2 1 32 32 H 1.09000 * 109.47112 * 284.01059 * 12 2 1 33 33 H 0.96709 * 113.99523 * 300.00160 * 15 13 12 34 34 H 1.08994 * 109.47012 * 64.99678 * 16 13 12 35 35 H 1.09006 * 109.46847 * 304.99904 * 16 13 12 36 36 H 1.00904 * 111.00158 * 56.04429 * 17 16 13 37 37 H 1.08991 * 112.82574 * 334.66875 * 18 17 16 38 38 H 1.08999 * 113.65752 * 253.88220 * 19 18 17 39 39 H 1.08997 * 113.66230 * 24.94394 * 19 18 17 40 40 H 1.09000 * 113.66130 * 215.29722 * 21 20 19 41 41 H 1.08998 * 113.66090 * 346.35397 * 21 20 19 42 42 H 1.09003 * 113.57694 * 270.12609 * 22 21 20 43 43 H 1.09002 * 113.65267 * 139.35160 * 22 21 20 44 44 H 1.09000 * 113.65989 * 13.65422 * 23 20 19 45 45 H 1.09003 * 113.65673 * 144.70452 * 23 20 19 46 46 H 1.09007 * 113.66008 * 270.42385 * 24 20 19 47 47 H 1.09000 * 113.66415 * 139.37005 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5288 7 7 2.7135 4.0013 -0.6158 8 14 1.5826 4.1870 -3.1381 9 1 0.2706 4.8680 -2.9954 10 1 2.6250 5.1877 -3.4800 11 1 1.4982 3.1713 -4.2181 12 6 1.9955 -0.7659 1.1376 13 6 3.4728 -1.0839 0.8984 14 1 4.0283 -0.1548 0.7697 15 8 3.6034 -1.8837 -0.2786 16 6 4.0308 -1.8495 2.0998 17 7 5.4753 -2.0501 1.9246 18 6 6.0468 -2.7831 3.0622 19 6 6.3924 -4.2483 2.7397 20 6 7.6656 -4.0368 3.5644 21 6 7.7673 -4.5395 5.0048 22 6 8.5721 -5.7252 4.4424 23 6 8.9450 -4.8159 3.2576 24 6 7.5555 -2.5435 3.2540 25 1 -0.3633 0.5374 0.8760 26 1 -0.3633 0.4899 -0.9034 27 1 -0.3634 -1.0273 0.0275 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3444 0.1082 30 1 2.9880 4.9175 -0.7777 31 1 1.4357 -1.6956 1.2399 32 1 1.8934 -0.1781 2.0498 33 1 3.1333 -2.7277 -0.2347 34 1 3.5360 -2.8177 2.1753 35 1 3.8511 -1.2776 3.0103 36 1 5.9488 -1.1696 1.7876 37 1 5.4665 -2.6632 3.9770 38 1 5.7004 -4.9675 3.1779 39 1 6.5816 -4.4305 1.6819 40 1 8.3480 -3.8863 5.6562 41 1 6.8086 -4.8270 5.4365 42 1 7.9536 -6.5773 4.1603 43 1 9.4244 -6.0077 5.0604 44 1 8.9271 -5.3241 2.2934 45 1 9.8567 -4.2403 3.4178 46 1 8.0711 -2.2474 2.3404 47 1 7.7921 -1.9017 4.1027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357128213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = -6.991966 kcal Electronic energy + Delta-G solvation = -22364.126294 eV Core-core repulsion = 19161.988984 eV Total energy + Delta-G solvation = -3202.137309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59198 -38.05413 -36.20655 -35.19553 -32.73658 -32.43476 -29.25743 -27.27239 -26.02528 -25.98439 -25.61720 -23.77298 -22.95624 -21.50450 -20.60914 -19.89224 -18.09990 -16.50616 -16.31375 -15.93118 -15.66546 -15.45617 -15.11530 -14.72159 -14.59751 -14.13376 -13.77917 -13.38917 -13.06397 -12.91468 -12.88500 -12.41608 -12.20551 -12.07885 -11.94581 -11.76651 -11.36698 -11.20238 -11.11730 -10.99493 -10.88947 -10.64834 -10.63334 -10.40992 -10.30695 -10.25005 -10.09198 -9.71147 -9.38934 -9.07474 -8.39492 -8.34441 -7.16863 -5.98940 -3.99052 3.34907 3.40959 3.46533 4.01377 4.19592 4.35831 4.42599 4.47231 4.56323 4.59383 4.75123 4.93679 4.99915 5.17087 5.21146 5.35494 5.36723 5.41732 5.47190 5.52163 5.57826 5.63713 5.67790 5.70179 5.74625 5.77504 5.78423 5.83879 5.85353 6.07122 6.12311 6.12564 6.19262 6.34518 6.36132 6.55201 6.74035 7.11158 7.31458 7.33980 7.40596 7.84149 8.12111 8.21665 8.31499 8.59773 9.08160 9.64679 11.12296 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.002798 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.580282 B =10004.959099 C =10482.865718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.100 0.900 15 O -0.531 6.531 16 C 0.028 3.972 17 N -0.667 5.667 18 C 0.061 3.939 19 C -0.098 4.098 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.126 4.126 24 C -0.130 4.130 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.042 0.958 28 H -0.013 1.013 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.360 0.640 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.344 0.656 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -17.531 11.747 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.118 0.882 15 O -0.333 6.333 16 C -0.102 4.102 17 N -0.298 5.298 18 C -0.049 4.049 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.156 4.156 22 C -0.177 4.177 23 C -0.164 4.164 24 C -0.168 4.168 25 H 0.028 0.972 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.005 0.995 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.205 0.795 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.052 -17.616 10.756 22.538 hybrid contribution -0.885 1.304 1.003 1.868 sum 8.167 -16.312 11.759 21.704 Atomic orbital electron populations 1.22197 0.88911 0.98867 1.00879 1.62040 1.06460 1.17807 1.39192 1.19778 0.95503 0.81491 0.96510 1.21156 1.34464 0.96780 1.01690 0.91877 1.24985 0.95350 0.97393 0.96992 1.69951 1.38591 1.11404 1.34179 0.86499 0.77887 0.79205 0.83855 1.20837 1.21271 1.19712 1.22684 0.96073 0.98137 0.93501 1.21876 0.94441 0.94016 0.83908 0.88196 1.86690 1.75425 1.33072 1.38129 1.22758 0.89281 1.00210 0.97935 1.60519 1.02993 1.26094 1.40235 1.22988 0.94114 0.95502 0.92307 1.22817 0.94544 0.96042 1.00263 1.22363 0.96225 0.95628 0.96461 1.22658 1.00395 0.97548 0.94979 1.22808 0.99942 0.96953 0.98019 1.22724 0.97217 0.97856 0.98591 1.23066 0.95973 0.95797 1.01932 0.97233 0.90798 0.93874 0.99488 0.95062 0.93011 0.92155 0.95395 0.79510 0.91111 0.94820 0.83629 0.91553 0.92038 0.88850 0.90053 0.91532 0.90308 0.91717 0.91346 0.90172 0.89076 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.07 0.56 1.35 16 2 N -0.53 -11.70 4.60 -244.37 -1.12 -12.82 16 3 C 0.19 5.11 4.57 -4.97 -0.02 5.08 16 4 C -0.50 -14.48 8.54 -34.44 -0.29 -14.78 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.03 0.46 4.63 -3.83 -0.02 0.44 16 13 C 0.12 1.97 3.17 -26.73 -0.08 1.88 16 14 H 0.10 1.97 6.56 -51.93 -0.34 1.63 16 15 O -0.53 -9.42 13.18 -35.23 -0.46 -9.89 16 16 C 0.03 0.37 5.18 -3.83 -0.02 0.35 16 17 N -0.67 -8.45 6.50 -105.69 -0.69 -9.13 16 18 C 0.06 0.65 4.12 -66.73 -0.27 0.37 16 19 C -0.10 -0.97 7.66 -26.15 -0.20 -1.17 16 20 C -0.11 -0.93 1.11 -154.58 -0.17 -1.10 16 21 C -0.12 -0.91 7.84 -26.28 -0.21 -1.12 16 22 C -0.14 -1.00 8.08 -25.76 -0.21 -1.21 16 23 C -0.13 -1.01 7.84 -26.29 -0.21 -1.21 16 24 C -0.13 -1.24 7.43 -26.28 -0.20 -1.44 16 25 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 26 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 27 H 0.04 0.72 7.97 -51.93 -0.41 0.30 16 28 H -0.01 -0.36 8.11 -51.93 -0.42 -0.78 16 29 H 0.03 0.88 6.38 -51.93 -0.33 0.55 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 32 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.36 5.01 9.05 45.56 0.41 5.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.34 4.50 8.56 -39.29 -0.34 4.16 16 37 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -31.29 371.93 -10.42 -41.71 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.03 Total: 4.96 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.44 Total: -11.09 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -1.08 Total: -48.39 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.46 Total: -9.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.29 -10.42 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357128213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.716 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds