Wall clock time and date at job start Tue Mar 31 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99581 * 2 1 4 4 C 1.50697 * 109.47077 * 293.95178 * 3 2 1 5 5 H 1.08000 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99702 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00453 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00128 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47081 * 89.99632 * 8 6 4 10 10 H 1.48493 * 109.47431 * 209.99965 * 8 6 4 11 11 H 1.48506 * 109.46768 * 329.99897 * 8 6 4 12 12 C 1.46897 * 111.00138 * 123.95294 * 2 1 3 13 13 C 1.52994 * 109.47169 * 164.01139 * 12 2 1 14 14 H 1.09006 * 109.47646 * 58.50962 * 13 12 2 15 15 O 1.42903 * 109.47234 * 298.51228 * 13 12 2 16 16 C 1.53001 * 109.47318 * 178.51144 * 13 12 2 17 17 N 1.46893 * 109.47255 * 184.99818 * 16 13 12 18 18 C 1.46899 * 111.00038 * 179.97438 * 17 16 13 19 19 C 1.53954 * 113.57853 * 105.75891 * 18 17 16 20 20 C 1.53165 * 86.69579 * 139.37359 * 19 18 17 21 21 C 1.52908 * 121.13600 * 100.81361 * 20 19 18 22 22 C 1.53948 * 86.77971 * 100.82833 * 21 20 19 23 23 C 1.52906 * 121.14173 * 209.37909 * 20 19 18 24 24 C 1.52912 * 88.03679 * 335.10131 * 20 19 18 25 25 H 1.09006 * 109.47043 * 301.52889 * 1 2 3 26 26 H 1.09004 * 109.47144 * 61.52814 * 1 2 3 27 27 H 1.09001 * 109.47309 * 181.53305 * 1 2 3 28 28 H 1.08997 * 109.47264 * 53.95713 * 3 2 1 29 29 H 1.09002 * 109.46404 * 173.95726 * 3 2 1 30 30 H 0.96999 * 120.00494 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47132 * 44.01191 * 12 2 1 32 32 H 1.09000 * 109.47112 * 284.01059 * 12 2 1 33 33 H 0.96709 * 113.99523 * 300.00160 * 15 13 12 34 34 H 1.08994 * 109.47012 * 64.99678 * 16 13 12 35 35 H 1.09006 * 109.46847 * 304.99904 * 16 13 12 36 36 H 1.00904 * 111.00158 * 56.04429 * 17 16 13 37 37 H 1.08991 * 112.82574 * 334.66875 * 18 17 16 38 38 H 1.08999 * 113.65752 * 253.88220 * 19 18 17 39 39 H 1.08997 * 113.66230 * 24.94394 * 19 18 17 40 40 H 1.09000 * 113.66130 * 215.29722 * 21 20 19 41 41 H 1.08998 * 113.66090 * 346.35397 * 21 20 19 42 42 H 1.09003 * 113.57694 * 270.12609 * 22 21 20 43 43 H 1.09002 * 113.65267 * 139.35160 * 22 21 20 44 44 H 1.09000 * 113.65989 * 13.65422 * 23 20 19 45 45 H 1.09003 * 113.65673 * 144.70452 * 23 20 19 46 46 H 1.09007 * 113.66008 * 270.42385 * 24 20 19 47 47 H 1.09000 * 113.66415 * 139.37005 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0275 3.3492 -1.5288 7 7 2.7135 4.0013 -0.6158 8 14 1.5826 4.1870 -3.1381 9 1 0.2706 4.8680 -2.9954 10 1 2.6250 5.1877 -3.4800 11 1 1.4982 3.1713 -4.2181 12 6 1.9955 -0.7659 1.1376 13 6 3.4728 -1.0839 0.8984 14 1 4.0283 -0.1548 0.7697 15 8 3.6034 -1.8837 -0.2786 16 6 4.0308 -1.8495 2.0998 17 7 5.4753 -2.0501 1.9246 18 6 6.0468 -2.7831 3.0622 19 6 6.3924 -4.2483 2.7397 20 6 7.6656 -4.0368 3.5644 21 6 7.7673 -4.5395 5.0048 22 6 8.5721 -5.7252 4.4424 23 6 8.9450 -4.8159 3.2576 24 6 7.5555 -2.5435 3.2540 25 1 -0.3633 0.5374 0.8760 26 1 -0.3633 0.4899 -0.9034 27 1 -0.3634 -1.0273 0.0275 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3444 0.1082 30 1 2.9880 4.9175 -0.7777 31 1 1.4357 -1.6956 1.2399 32 1 1.8934 -0.1781 2.0498 33 1 3.1333 -2.7277 -0.2347 34 1 3.5360 -2.8177 2.1753 35 1 3.8511 -1.2776 3.0103 36 1 5.9488 -1.1696 1.7876 37 1 5.4665 -2.6632 3.9770 38 1 5.7004 -4.9675 3.1779 39 1 6.5816 -4.4305 1.6819 40 1 8.3480 -3.8863 5.6562 41 1 6.8086 -4.8270 5.4365 42 1 7.9536 -6.5773 4.1603 43 1 9.4244 -6.0077 5.0604 44 1 8.9271 -5.3241 2.2934 45 1 9.8567 -4.2403 3.4178 46 1 8.0711 -2.2474 2.3404 47 1 7.7921 -1.9017 4.1027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357128213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:16 Heat of formation + Delta-G solvation = -30.063172 kcal Electronic energy + Delta-G solvation = -22365.126736 eV Core-core repulsion = 19161.988984 eV Total energy + Delta-G solvation = -3203.137752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31602 -39.46192 -37.44910 -36.48070 -34.60641 -33.70838 -30.65964 -29.29133 -27.03867 -26.74809 -26.59638 -25.37384 -24.02322 -22.83600 -21.82920 -21.17799 -18.79486 -18.60915 -17.57759 -17.05708 -16.76566 -16.40030 -16.28501 -16.17737 -15.99334 -15.47746 -15.28491 -14.92080 -14.38630 -13.96975 -13.89353 -13.64751 -13.50028 -13.13628 -12.96320 -12.90204 -12.79269 -12.76818 -12.59915 -12.53001 -12.32347 -12.17125 -11.90911 -11.68832 -11.49821 -11.31389 -11.08887 -10.95748 -10.90695 -10.60957 -10.47908 -9.33510 -8.95387 -8.20921 -6.30112 1.39383 1.41618 1.53362 2.40155 2.96390 3.11761 3.40462 3.50060 3.64511 3.72865 3.76577 3.83354 3.95816 4.00918 4.04369 4.21412 4.36745 4.40576 4.44837 4.57947 4.59489 4.60866 4.74140 4.77036 4.81555 4.86855 4.88053 4.94933 5.04197 5.06743 5.08843 5.10907 5.12071 5.16246 5.24218 5.30210 5.37755 5.53290 5.64272 5.65010 6.05915 6.18176 6.33406 6.37369 6.64982 6.85603 7.13571 7.39163 8.90362 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.002798 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.580282 B =10004.959099 C =10482.865718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.027 3.973 13 C 0.126 3.874 14 H 0.059 0.941 15 O -0.553 6.553 16 C 0.043 3.957 17 N -0.677 5.677 18 C 0.059 3.941 19 C -0.096 4.096 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.129 4.129 25 H 0.008 0.992 26 H 0.054 0.946 27 H 0.083 0.917 28 H -0.042 1.042 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.097 0.903 32 H 0.025 0.975 33 H 0.378 0.622 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.338 0.662 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -19.073 12.028 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.077 0.923 15 O -0.358 6.358 16 C -0.087 4.087 17 N -0.308 5.308 18 C -0.051 4.051 19 C -0.134 4.134 20 C -0.106 4.106 21 C -0.154 4.154 22 C -0.172 4.172 23 C -0.166 4.166 24 C -0.167 4.167 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.101 0.899 28 H -0.024 1.024 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.225 0.775 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.156 0.844 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.659 -19.194 11.049 23.780 hybrid contribution -0.758 1.731 0.935 2.108 sum 7.900 -17.464 11.983 22.605 Atomic orbital electron populations 1.22222 0.87448 1.01150 0.99869 1.61943 1.07915 1.15156 1.41701 1.19391 0.93801 0.83852 0.94677 1.21477 1.34647 0.97456 1.02469 0.92151 1.25921 0.95051 0.98107 1.00746 1.70076 1.39428 1.11852 1.36251 0.85390 0.78031 0.78066 0.79191 1.19588 1.20664 1.19095 1.22802 0.96935 0.98788 0.91727 1.21669 0.93570 0.93046 0.85171 0.92293 1.86640 1.76016 1.34245 1.38873 1.22561 0.89629 1.00501 0.95994 1.60554 1.02772 1.25898 1.41569 1.23072 0.94578 0.95727 0.91694 1.22747 0.95348 0.95535 0.99750 1.22371 0.96130 0.94768 0.97309 1.22681 1.00761 0.97719 0.94199 1.22797 1.00214 0.96710 0.97505 1.22760 0.96964 0.98023 0.98898 1.23043 0.95164 0.96764 1.01743 0.97374 0.92676 0.89855 1.02431 0.97703 0.92720 0.88463 0.95634 0.77483 0.89148 0.94413 0.84351 0.91120 0.91317 0.90164 0.89464 0.91261 0.90071 0.90696 0.91722 0.89780 0.89993 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.32 127.69 1.19 2.78 16 2 N -0.54 -23.95 4.60 -927.04 -4.27 -28.22 16 3 C 0.21 11.51 4.57 85.55 0.39 11.90 16 4 C -0.52 -30.74 8.54 25.60 0.22 -30.52 16 5 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 6 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 7 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 8 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.03 0.91 4.63 86.30 0.40 1.31 16 13 C 0.13 4.21 3.17 30.59 0.10 4.31 16 14 H 0.06 2.47 6.56 -2.38 -0.02 2.45 16 15 O -0.55 -19.36 13.18 -148.98 -1.96 -21.32 16 16 C 0.04 1.09 5.18 86.30 0.45 1.53 16 17 N -0.68 -16.94 6.50 -488.29 -3.17 -20.12 16 18 C 0.06 1.19 4.12 45.56 0.19 1.38 16 19 C -0.10 -1.77 7.66 30.97 0.24 -1.53 16 20 C -0.11 -1.70 1.11 -52.23 -0.06 -1.75 16 21 C -0.12 -1.56 7.84 30.88 0.24 -1.32 16 22 C -0.13 -1.67 8.08 31.23 0.25 -1.42 16 23 C -0.13 -1.88 7.84 30.88 0.24 -1.64 16 24 C -0.13 -2.38 7.43 30.89 0.23 -2.15 16 25 H 0.01 0.30 8.13 -2.38 -0.02 0.28 16 26 H 0.05 2.31 6.90 -2.39 -0.02 2.29 16 27 H 0.08 2.53 7.97 -2.39 -0.02 2.51 16 28 H -0.04 -2.49 8.11 -2.39 -0.02 -2.51 16 29 H 0.00 0.29 6.38 -2.39 -0.02 0.28 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.10 2.63 7.88 -2.39 -0.02 2.61 16 32 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 33 H 0.38 9.86 9.05 -74.05 -0.67 9.19 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 0.93 8.13 -2.38 -0.02 0.91 16 36 H 0.34 9.10 8.56 -89.69 -0.77 8.33 16 37 H 0.07 1.39 7.88 -2.39 -0.02 1.37 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.25 371.93 -3.06 -71.31 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.50 Total: 24.75 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.54 Total: -16.69 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -7.16 Total: -105.69 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.96 Total: -21.32 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.25 -3.06 -71.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357128213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.244 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds