Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.50706 * 109.47293 * 293.95211 * 3 2 1 5 5 H 1.08003 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99706 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00377 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99837 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47394 * 89.99427 * 8 6 4 10 10 H 1.48497 * 109.47272 * 209.99889 * 8 6 4 11 11 H 1.48503 * 109.46713 * 329.99903 * 8 6 4 12 12 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 13 13 C 1.52997 * 109.47254 * 66.04707 * 12 2 1 14 14 H 1.09004 * 109.47346 * 305.00031 * 13 12 2 15 15 O 1.42904 * 109.47396 * 64.99580 * 13 12 2 16 16 C 1.52997 * 109.47504 * 184.99955 * 13 12 2 17 17 N 1.46898 * 109.47377 * 180.02562 * 16 13 12 18 18 C 1.46901 * 111.00105 * 179.97438 * 17 16 13 19 19 C 1.53941 * 113.58138 * 254.24321 * 18 17 16 20 20 C 1.53069 * 86.72704 * 220.68937 * 19 18 17 21 21 C 1.52911 * 121.17461 * 150.58374 * 20 19 18 22 22 C 1.53954 * 86.78307 * 100.75301 * 21 20 19 23 23 C 1.52906 * 121.06622 * 259.12127 * 20 19 18 24 24 C 1.52908 * 88.07056 * 24.83245 * 20 19 18 25 25 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 26 26 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 27 27 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 28 28 H 1.09006 * 109.47466 * 53.95276 * 3 2 1 29 29 H 1.09000 * 109.46995 * 173.95474 * 3 2 1 30 30 H 0.97004 * 120.00259 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47043 * 186.04778 * 12 2 1 32 32 H 1.09001 * 109.47354 * 306.04839 * 12 2 1 33 33 H 0.96708 * 113.99258 * 60.00195 * 15 13 12 34 34 H 1.09004 * 109.46881 * 300.00361 * 16 13 12 35 35 H 1.09002 * 109.47016 * 59.99741 * 16 13 12 36 36 H 1.00895 * 111.00283 * 56.04183 * 17 16 13 37 37 H 1.09000 * 112.82274 * 25.33312 * 18 17 16 38 38 H 1.09005 * 113.66569 * 335.13540 * 19 18 17 39 39 H 1.09002 * 113.66611 * 106.18619 * 19 18 17 40 40 H 1.09000 * 113.66121 * 215.21888 * 21 20 19 41 41 H 1.08998 * 113.66691 * 346.28328 * 21 20 19 42 42 H 1.09001 * 113.57617 * 270.13156 * 22 21 20 43 43 H 1.08993 * 113.65395 * 139.34454 * 22 21 20 44 44 H 1.09000 * 113.66786 * 13.62982 * 23 20 19 45 45 H 1.09005 * 113.66150 * 144.59647 * 23 20 19 46 46 H 1.08994 * 113.66359 * 220.69683 * 24 20 19 47 47 H 1.09004 * 113.66074 * 89.63578 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5288 7 7 2.7128 4.0015 -0.6153 8 14 1.5827 4.1870 -3.1381 9 1 0.2708 4.8679 -2.9954 10 1 2.6253 5.1876 -3.4800 11 1 1.4983 3.1712 -4.2181 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 1 0.5532 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1800 16 6 2.0699 -3.0199 2.2131 17 7 1.7210 -4.4377 2.0523 18 6 2.1285 -5.2170 3.2290 19 6 3.3700 -6.0943 2.9869 20 6 2.6554 -7.1766 3.7998 21 6 2.9096 -8.6614 3.5369 22 6 3.8346 -8.6318 4.7673 23 6 3.0133 -7.4285 5.2649 24 6 1.3300 -6.5206 3.4112 25 1 -0.3634 0.4512 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3444 0.1082 30 1 2.9880 4.9174 -0.7776 31 1 3.0797 -0.6611 1.1757 32 1 1.5611 -0.3872 2.0628 33 1 3.2602 -2.7167 -0.1359 34 1 3.1482 -2.9236 2.3403 35 1 1.5633 -2.6179 3.0906 36 1 2.1267 -4.8167 1.2098 37 1 2.1907 -4.6137 4.1347 38 1 3.5203 -6.3606 1.9407 39 1 4.2740 -5.7140 3.4626 40 1 2.0265 -9.2865 3.6686 41 1 3.4329 -8.8567 2.6009 42 1 4.8692 -8.3849 4.5291 43 1 3.7457 -9.5131 5.4025 44 1 3.6192 -6.6389 5.7093 45 1 2.1589 -7.7056 5.8826 46 1 0.6065 -6.4803 4.2253 47 1 0.9059 -6.9069 2.4843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357128220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -9.407909 kcal Electronic energy + Delta-G solvation = -22168.701641 eV Core-core repulsion = 18966.459568 eV Total energy + Delta-G solvation = -3202.242073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73242 -38.24904 -36.30097 -35.32807 -32.77811 -32.46883 -29.36980 -27.06292 -26.10208 -26.04754 -25.88128 -24.03632 -22.99004 -21.35117 -20.72793 -20.10650 -18.25494 -16.62345 -16.22846 -15.95356 -15.73574 -15.65727 -15.40675 -14.84981 -14.52930 -13.99755 -13.86745 -13.54378 -13.06512 -13.05164 -12.88994 -12.46303 -12.34432 -12.31579 -12.04830 -11.87867 -11.33762 -11.30614 -11.23988 -11.07776 -10.85260 -10.72764 -10.67842 -10.51138 -10.39818 -10.25153 -10.16681 -9.95342 -9.55576 -9.08557 -8.42528 -8.41419 -7.17138 -6.01140 -4.02005 3.33495 3.39381 3.44791 3.90323 4.11162 4.20015 4.32521 4.44019 4.48264 4.59520 4.66107 4.73425 4.99077 5.08680 5.13282 5.22030 5.32326 5.34338 5.38732 5.39700 5.47991 5.52109 5.56033 5.57115 5.63549 5.68839 5.71301 5.77316 5.80157 6.03262 6.07826 6.09004 6.20172 6.23374 6.36092 6.45428 6.80686 6.97443 7.28925 7.34249 7.35192 7.82288 7.97502 8.12071 8.22940 8.57669 9.06124 9.62129 11.09826 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051146 B = 0.002379 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.317953 B =11766.850385 C =11841.693232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.113 3.887 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.027 3.973 17 N -0.674 5.674 18 C 0.070 3.930 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.008 0.992 26 H 0.074 0.926 27 H 0.048 0.952 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.366 0.634 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.349 0.651 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -23.282 11.563 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.053 3.947 14 H 0.121 0.879 15 O -0.350 6.350 16 C -0.103 4.103 17 N -0.305 5.305 18 C -0.041 4.041 19 C -0.183 4.183 20 C -0.107 4.107 21 C -0.164 4.164 22 C -0.178 4.178 23 C -0.155 4.155 24 C -0.153 4.153 25 H 0.027 0.973 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.212 0.788 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.170 0.830 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.072 -23.324 11.169 25.860 hybrid contribution 1.143 1.163 0.173 1.639 sum 1.215 -22.161 11.342 24.925 Atomic orbital electron populations 1.22265 0.88964 0.99672 1.00391 1.62032 1.06871 1.17384 1.39143 1.19743 0.95229 0.81674 0.96619 1.21176 1.34574 0.96848 1.01696 0.91776 1.25002 0.95347 0.97375 0.97056 1.69962 1.38540 1.11424 1.34138 0.86485 0.77947 0.79190 0.83739 1.20761 1.21291 1.19715 1.22712 1.00336 0.93951 0.93452 1.22012 0.98263 0.90698 0.83698 0.87865 1.86612 1.22750 1.83837 1.41790 1.22707 0.98467 0.89190 0.99896 1.60335 1.63606 1.01927 1.04590 1.23004 0.93785 0.93064 0.94211 1.23461 0.98193 0.96498 1.00136 1.22334 0.97822 0.94218 0.96305 1.22730 0.99590 0.95801 0.98296 1.22819 0.98664 0.98399 0.97920 1.22653 0.99881 0.98209 0.94759 1.22915 0.95548 0.95115 1.01675 0.97313 0.90702 0.93347 0.99325 0.95434 0.92982 0.91360 0.95363 0.78838 0.95060 0.90480 0.83037 0.88915 0.89594 0.91600 0.90038 0.91523 0.90375 0.91639 0.91517 0.89869 0.91473 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.07 0.55 1.27 16 2 N -0.53 -11.69 4.70 -244.36 -1.15 -12.84 16 3 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 4 C -0.50 -14.45 8.46 -34.44 -0.29 -14.74 16 5 H 0.06 1.83 7.12 -52.48 -0.37 1.46 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.03 0.44 4.60 -3.83 -0.02 0.43 16 13 C 0.11 1.65 3.19 -26.73 -0.09 1.56 16 14 H 0.10 1.64 6.34 -51.93 -0.33 1.31 16 15 O -0.55 -8.33 12.62 -35.23 -0.44 -8.78 16 16 C 0.03 0.32 5.24 -3.83 -0.02 0.30 16 17 N -0.67 -7.38 6.61 -105.69 -0.70 -8.08 16 18 C 0.07 0.65 4.16 -66.73 -0.28 0.37 16 19 C -0.14 -1.18 7.48 -26.20 -0.20 -1.38 16 20 C -0.11 -0.81 1.11 -154.63 -0.17 -0.99 16 21 C -0.13 -0.89 7.84 -26.28 -0.21 -1.10 16 22 C -0.14 -0.92 8.08 -25.74 -0.21 -1.13 16 23 C -0.12 -0.82 7.84 -26.28 -0.21 -1.03 16 24 C -0.11 -0.99 7.64 -26.28 -0.20 -1.19 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 27 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.37 4.50 9.05 45.56 0.41 4.91 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 36 H 0.35 3.84 7.59 -39.29 -0.30 3.54 16 37 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 38 H 0.09 0.71 7.82 -51.93 -0.41 0.31 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -30.78 370.10 -10.41 -41.19 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.96 Total: 3.41 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.45 Total: -11.09 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -1.11 Total: -47.24 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.44 Total: -8.78 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.78 -10.41 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357128220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.786 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds