Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46738 * 2 1 4 4 C 1.46844 * 111.00368 * 294.20761 * 3 2 1 5 5 C 1.53040 * 109.52514 * 174.16164 * 4 3 2 6 6 C 1.53113 * 109.27526 * 59.18332 * 5 4 3 7 7 C 1.53001 * 109.57376 * 182.41044 * 6 5 4 8 8 N 1.46907 * 109.47356 * 186.66245 * 7 6 5 9 9 C 1.46897 * 110.99878 * 214.45639 * 8 7 6 10 10 C 1.50702 * 109.47120 * 163.45589 * 9 8 7 11 11 H 1.07991 * 119.99767 * 4.79257 * 10 9 8 12 12 C 1.37876 * 119.99888 * 184.79931 * 10 9 8 13 13 N 1.31509 * 120.00173 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99898 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46995 * 59.99985 * 14 12 10 16 16 H 1.48501 * 109.47260 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47508 * 300.00005 * 14 12 10 18 18 C 1.46897 * 111.00066 * 90.49995 * 8 7 6 19 19 C 1.53001 * 109.47029 * 283.17952 * 18 8 7 20 20 C 1.53005 * 109.47041 * 180.81525 * 19 18 8 21 21 C 1.52998 * 109.47496 * 300.81790 * 19 18 8 22 22 C 1.53119 * 109.16444 * 302.34151 * 6 5 4 23 23 C 1.46853 * 110.99764 * 169.99803 * 3 2 1 24 24 H 1.08998 * 109.47063 * 59.99687 * 1 2 3 25 25 H 1.09004 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47109 * 299.99744 * 1 2 3 27 27 H 1.08995 * 109.47136 * 240.00041 * 2 1 3 28 28 H 1.08998 * 109.47063 * 120.00313 * 2 1 3 29 29 H 1.08995 * 109.46602 * 294.18046 * 4 3 2 30 30 H 1.09007 * 109.45992 * 54.15021 * 4 3 2 31 31 H 1.08996 * 109.50367 * 299.24252 * 5 4 3 32 32 H 1.08996 * 109.50265 * 179.12447 * 5 4 3 33 33 H 1.08996 * 109.52876 * 62.25320 * 6 5 4 34 34 H 1.09005 * 109.46856 * 306.65647 * 7 6 5 35 35 H 1.08998 * 109.47339 * 66.65656 * 7 6 5 36 36 H 1.09000 * 109.47294 * 283.45389 * 9 8 7 37 37 H 1.08998 * 109.47329 * 43.45621 * 9 8 7 38 38 H 0.97003 * 120.00536 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.47405 * 43.18285 * 18 8 7 40 40 H 1.09001 * 109.46598 * 163.18605 * 18 8 7 41 41 H 1.08999 * 109.47122 * 60.81988 * 19 18 8 42 42 H 1.08999 * 109.46784 * 60.00256 * 20 19 18 43 43 H 1.08994 * 109.47018 * 180.02562 * 20 19 18 44 44 H 1.08997 * 109.46860 * 300.00540 * 20 19 18 45 45 H 1.08998 * 109.47217 * 64.18487 * 21 19 18 46 46 H 1.08991 * 109.47205 * 184.18575 * 21 19 18 47 47 H 1.09004 * 109.46797 * 304.18571 * 21 19 18 48 48 H 1.08999 * 109.50351 * 297.71812 * 22 6 5 49 49 H 1.08999 * 109.53780 * 177.61771 * 22 6 5 50 50 H 1.08996 * 109.46207 * 305.86072 * 23 3 2 51 51 H 1.09001 * 109.45995 * 65.83670 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0686 -1.2503 5 6 2.0606 3.5440 -1.1566 6 6 3.5675 3.6483 -0.9057 7 6 3.9607 5.1188 -0.7510 8 7 5.4235 5.2286 -0.6700 9 6 5.8204 6.3196 0.2300 10 6 7.2696 6.1556 0.6096 11 1 7.8595 5.3700 0.1614 12 6 7.8421 7.0085 1.5293 13 7 7.1237 7.9654 2.0749 14 14 9.6381 6.8047 2.0004 15 1 10.4873 6.9580 0.7918 16 1 10.0084 7.8393 2.9993 17 1 9.8469 5.4553 2.5841 18 6 6.0128 5.4057 -2.0039 19 6 6.0293 4.0626 -2.7365 20 6 6.6617 4.2430 -4.1180 21 6 6.8465 3.0515 -1.9297 22 6 3.9174 2.8875 0.3762 23 6 3.4680 1.4312 0.2381 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 2.1942 1.6028 -2.0816 30 1 0.5903 1.9905 -1.4147 31 1 1.5214 4.0138 -0.3341 32 1 1.8115 4.0476 -2.0906 33 1 4.1078 3.2133 -1.7464 34 1 3.6011 5.6835 -1.6112 35 1 3.5153 5.5202 0.1592 36 1 5.6832 7.2756 -0.2753 37 1 5.2041 6.2919 1.1286 38 1 7.5263 8.5652 2.7223 39 1 5.4186 6.1219 -2.5715 40 1 7.0324 5.7777 -1.9040 41 1 5.0085 3.6975 -2.8491 42 1 7.6825 4.6081 -4.0054 43 1 6.6731 3.2863 -4.6401 44 1 6.0795 4.9633 -4.6927 45 1 6.3552 2.8670 -0.9743 46 1 6.9207 2.1175 -2.4864 47 1 7.8457 3.4500 -1.7534 48 1 3.4074 3.3471 1.2228 49 1 4.9948 2.9221 0.5380 50 1 3.7027 0.8901 1.1547 51 1 3.9887 0.9685 -0.6003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462019051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -16.241648 kcal Electronic energy + Delta-G solvation = -24171.078621 eV Core-core repulsion = 21104.373310 eV Total energy + Delta-G solvation = -3066.705311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.28132 -37.46563 -34.51075 -33.76490 -32.20938 -30.82126 -29.99097 -27.27900 -26.66886 -26.11533 -24.42614 -23.01746 -22.27517 -21.17751 -20.37167 -19.60698 -18.98163 -16.32077 -16.00499 -15.34365 -15.15535 -14.64487 -14.40472 -14.29127 -13.89185 -13.76653 -13.48133 -13.21392 -13.02741 -12.73680 -12.36939 -12.28775 -11.97621 -11.85951 -11.77087 -11.67317 -11.29547 -11.23740 -11.07907 -10.96670 -10.85058 -10.78200 -10.65972 -10.61505 -10.35419 -10.20709 -9.95975 -9.88235 -9.58986 -9.40953 -9.10035 -8.38226 -8.24666 -7.13367 -5.97373 -3.97952 3.35792 3.40019 3.42809 3.95108 4.45712 4.80478 4.91637 5.03299 5.07291 5.22403 5.26756 5.36984 5.38419 5.39908 5.45801 5.51222 5.54272 5.65965 5.70900 5.76309 5.79702 5.87809 5.91537 5.98143 5.99091 6.06451 6.09318 6.12603 6.23475 6.29225 6.31338 6.35279 6.41248 6.46242 6.52263 6.59531 6.62326 6.75626 6.85285 7.00267 7.09341 7.19207 7.24231 7.37060 7.40162 7.88319 8.19001 8.32084 8.63272 9.09915 9.65810 11.13261 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.004494 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.555525 B = 6229.382530 C = 6879.360122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.058 3.942 5 C -0.114 4.114 6 C -0.088 4.088 7 C 0.060 3.940 8 N -0.529 5.529 9 C 0.195 3.805 10 C -0.501 4.501 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.069 3.931 19 C -0.096 4.096 20 C -0.146 4.146 21 C -0.132 4.132 22 C -0.100 4.100 23 C 0.057 3.943 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.061 0.939 36 H -0.016 1.016 37 H 0.031 0.969 38 H 0.260 0.740 39 H 0.016 0.984 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 -13.093 -8.207 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.070 4.070 5 C -0.152 4.152 6 C -0.106 4.106 7 C -0.069 4.069 8 N -0.252 5.252 9 C 0.070 3.930 10 C -0.539 4.539 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.060 4.060 19 C -0.115 4.115 20 C -0.204 4.204 21 C -0.190 4.190 22 C -0.138 4.138 23 C -0.071 4.071 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.002 0.998 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.087 0.913 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.924 -13.115 -7.475 18.065 hybrid contribution 1.039 0.365 -0.675 1.292 sum -8.885 -12.750 -8.150 17.548 Atomic orbital electron populations 1.21807 0.95185 1.01151 1.02465 1.22040 0.95883 0.89477 1.00404 1.61982 1.14712 1.14681 1.35007 1.22084 1.00067 0.95016 0.89820 1.21646 0.97157 0.94885 1.01499 1.21460 0.93885 0.96584 0.98717 1.22170 0.90337 0.94656 0.99741 1.61957 1.05841 1.48025 1.09372 1.19758 0.96570 0.86149 0.90561 1.21131 0.95224 1.14253 1.23325 0.91954 1.24968 0.97957 0.95378 0.96294 1.69944 1.36225 1.18345 1.29510 0.86619 0.85242 0.77720 0.78149 1.20411 1.21478 1.20218 1.22118 1.00643 0.94081 0.89168 1.21314 0.99251 0.96996 0.93934 1.21831 1.00953 1.00580 0.96999 1.21687 1.00306 0.96481 1.00499 1.21525 1.02253 0.92399 0.97636 1.22162 0.86337 0.98725 0.99875 0.92767 0.92658 0.91845 0.95411 0.91018 0.95444 0.91123 0.91339 0.92198 0.90492 0.95729 0.92022 0.99781 0.95055 0.92989 0.96615 0.90290 0.91500 0.92780 0.93421 0.93442 0.90973 0.95001 0.93089 0.91871 0.89635 0.91301 0.95364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.84 37.16 0.37 -0.95 16 2 C 0.05 0.51 5.68 -3.82 -0.02 0.49 16 3 N -0.54 -6.66 4.66 -234.67 -1.09 -7.75 16 4 C 0.06 0.68 5.29 -3.83 -0.02 0.66 16 5 C -0.11 -1.46 5.38 -26.65 -0.14 -1.60 16 6 C -0.09 -1.29 2.20 -90.50 -0.20 -1.49 16 7 C 0.06 1.06 4.44 -3.82 -0.02 1.04 16 8 N -0.53 -10.77 3.15 -236.07 -0.74 -11.51 16 9 C 0.19 4.97 4.67 -4.98 -0.02 4.94 16 10 C -0.50 -13.80 8.42 -34.44 -0.29 -14.09 16 11 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 14 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.07 1.29 4.24 -3.83 -0.02 1.27 16 19 C -0.10 -1.49 2.47 -90.62 -0.22 -1.71 16 20 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 21 C -0.13 -2.10 8.77 37.16 0.33 -1.77 16 22 C -0.10 -1.54 5.15 -26.65 -0.14 -1.67 16 23 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 24 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 28 H 0.07 0.71 7.99 -51.93 -0.41 0.29 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.75 6.21 -51.93 -0.32 0.43 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.15 4.51 -51.93 -0.23 0.92 16 34 H 0.02 0.42 7.44 -51.93 -0.39 0.04 16 35 H 0.06 1.16 7.39 -51.93 -0.38 0.78 16 36 H -0.02 -0.43 8.04 -51.93 -0.42 -0.85 16 37 H 0.03 0.87 7.59 -51.93 -0.39 0.47 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.02 0.29 7.59 -51.93 -0.39 -0.10 16 40 H 0.08 1.67 7.01 -51.93 -0.36 1.31 16 41 H 0.07 1.01 5.18 -51.93 -0.27 0.74 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.23 6.25 -51.93 -0.32 0.91 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.09 1.48 6.56 -51.93 -0.34 1.14 16 50 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 51 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -28.26 376.58 -10.65 -38.91 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -10.02 Total: -1.64 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.18 Total: -14.32 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -1.10 Total: -45.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.26 -10.65 -38.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462019051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.664 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds