Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46186 * 2 1 4 4 C 1.53036 * 109.45365 * 119.97090 * 2 1 3 5 5 C 1.53115 * 109.28031 * 179.19026 * 4 2 1 6 6 H 1.08999 * 109.57775 * 62.28464 * 5 4 2 7 7 C 1.53005 * 109.52517 * 182.44111 * 5 4 2 8 8 N 1.46903 * 109.46760 * 185.71060 * 7 5 4 9 9 C 1.46900 * 110.99326 * 191.48511 * 8 7 5 10 10 C 1.50702 * 109.46947 * 181.83713 * 9 8 7 11 11 H 1.08002 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00344 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00140 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99527 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47165 * 90.00292 * 14 12 10 16 16 H 1.48502 * 109.46805 * 209.99900 * 14 12 10 17 17 H 1.48502 * 109.47249 * 329.99814 * 14 12 10 18 18 C 1.46898 * 111.00188 * 67.53367 * 8 7 5 19 19 C 1.53007 * 109.47304 * 45.81372 * 18 8 7 20 20 C 1.52998 * 109.46836 * 38.66467 * 19 18 8 21 21 C 1.52994 * 109.47122 * 158.66584 * 19 18 8 22 22 C 1.53000 * 109.46666 * 278.66472 * 19 18 8 23 23 C 1.53121 * 109.15929 * 302.34896 * 5 4 2 24 24 C 1.53034 * 109.28034 * 57.65345 * 23 5 4 25 25 N 1.46841 * 109.46561 * 240.02035 * 2 1 3 26 26 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47246 * 299.97747 * 1 2 3 28 28 H 1.08999 * 109.47536 * 59.97859 * 1 2 3 29 29 H 1.09004 * 109.50638 * 59.24711 * 4 2 1 30 30 H 1.09004 * 109.50704 * 299.13371 * 4 2 1 31 31 H 1.08994 * 109.47031 * 65.71290 * 7 5 4 32 32 H 1.08996 * 109.47131 * 305.70803 * 7 5 4 33 33 H 1.09005 * 109.47249 * 301.83111 * 9 8 7 34 34 H 1.08997 * 109.47801 * 61.83878 * 9 8 7 35 35 H 0.97002 * 119.99901 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47135 * 165.81617 * 18 8 7 37 37 H 1.08997 * 109.47037 * 285.81485 * 18 8 7 38 38 H 1.08993 * 109.47523 * 57.74007 * 20 19 18 39 39 H 1.08998 * 109.46881 * 177.74152 * 20 19 18 40 40 H 1.09005 * 109.47043 * 297.73882 * 20 19 18 41 41 H 1.09001 * 109.47214 * 59.99631 * 21 19 18 42 42 H 1.08998 * 109.46925 * 180.02562 * 21 19 18 43 43 H 1.09006 * 109.46694 * 300.00046 * 21 19 18 44 44 H 1.08998 * 109.47521 * 90.63287 * 22 19 18 45 45 H 1.09008 * 109.46506 * 210.62757 * 22 19 18 46 46 H 1.08998 * 109.47173 * 330.62576 * 22 19 18 47 47 H 1.09004 * 109.50202 * 177.59325 * 23 5 4 48 48 H 1.09004 * 109.50320 * 297.70943 * 23 5 4 49 49 H 1.08998 * 109.46454 * 60.83423 * 24 23 5 50 50 H 1.08995 * 109.46129 * 180.81941 * 24 23 5 51 51 H 1.00906 * 110.99822 * 54.14812 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2359 6 1 3.9465 0.2864 1.2680 7 6 4.0856 -1.5087 2.4521 8 7 5.5499 -1.4071 2.5126 9 6 6.1025 -2.3487 3.4954 10 6 7.5991 -2.1845 3.5619 11 1 8.0905 -1.4534 2.9370 12 6 8.3411 -2.9667 4.4214 13 7 9.6470 -2.8230 4.4798 14 14 7.4911 -4.2307 5.5029 15 1 7.4168 -5.5277 4.7837 16 1 8.2624 -4.4052 6.7599 17 1 6.1187 -3.7638 5.8250 18 6 5.9704 -0.0309 2.8077 19 6 5.1261 0.5253 3.9561 20 6 4.8853 -0.5751 4.9914 21 6 5.8656 1.6918 4.6142 22 6 3.7832 1.0154 3.4108 23 6 4.0545 -1.4191 -0.0464 24 6 3.4865 -0.6780 -1.2588 25 7 2.0193 -0.6918 -1.1992 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5135 0.8902 28 1 -0.3634 0.5141 -0.8898 29 1 1.6655 -1.7446 1.2578 30 1 1.6892 -0.1981 2.1400 31 1 3.7973 -2.5562 2.3659 32 1 3.6543 -1.0866 3.3598 33 1 5.6709 -2.1459 4.4756 34 1 5.8620 -3.3689 3.1965 35 1 10.1689 -3.3731 5.0848 36 1 7.0220 -0.0259 3.0943 37 1 5.8324 0.5890 1.9219 38 1 5.8429 -0.9521 5.3504 39 1 4.3180 -0.1684 5.8286 40 1 4.3233 -1.3887 4.5328 41 1 6.0373 2.4757 3.8766 42 1 5.2644 2.0878 5.4326 43 1 6.8224 1.3426 5.0026 44 1 3.0579 0.2025 3.4469 45 1 3.4266 1.8477 4.0177 46 1 3.9084 1.3452 2.3795 47 1 5.1437 -1.3952 -0.0827 48 1 3.7121 -2.4539 -0.0591 49 1 3.8404 0.3529 -1.2530 50 1 3.8173 -1.1704 -2.1732 51 1 1.6196 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576599720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = 39.189940 kcal Electronic energy + Delta-G solvation = -25027.853813 eV Core-core repulsion = 21963.552196 eV Total energy + Delta-G solvation = -3064.301617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19659 -38.21120 -34.02119 -33.27150 -32.13455 -31.79581 -28.23897 -27.85513 -26.91887 -26.50469 -25.85775 -23.82432 -22.23988 -20.93959 -19.83572 -19.57352 -18.24443 -16.90800 -16.28551 -15.45810 -15.09642 -14.93080 -14.63217 -14.03936 -13.82160 -13.80624 -13.48494 -13.41660 -12.79119 -12.62804 -12.38857 -12.22397 -12.12893 -11.94690 -11.69020 -11.35357 -11.33176 -11.24262 -11.02239 -10.91756 -10.79549 -10.77656 -10.59110 -10.39765 -10.22315 -10.16664 -9.90290 -9.68221 -9.65416 -9.48448 -9.01141 -8.52007 -8.42647 -6.94544 -6.01665 -3.96783 3.30255 3.37872 3.39241 4.16315 4.44756 4.70361 4.90091 5.06013 5.08416 5.20107 5.26151 5.31276 5.33194 5.37634 5.41110 5.54178 5.56452 5.70410 5.74003 5.80976 5.82392 5.93035 5.96770 6.02922 6.04950 6.07210 6.13349 6.17906 6.18257 6.23239 6.27678 6.35097 6.39233 6.50597 6.51522 6.66226 6.69352 6.77040 6.84341 6.90543 6.96178 7.11450 7.13868 7.19770 7.38810 7.67662 8.06057 8.22026 8.73746 9.05812 9.61021 11.11302 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.005213 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.003166 B = 5370.209251 C = 5885.841684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.033 0.967 4 C -0.108 4.108 5 C -0.089 4.089 6 H 0.077 0.923 7 C 0.025 3.975 8 N -0.518 5.518 9 C 0.123 3.877 10 C -0.503 4.503 11 H 0.080 0.920 12 C 0.068 3.932 13 N -0.903 5.903 14 Si 0.871 3.129 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.267 1.267 18 C 0.067 3.933 19 C -0.095 4.095 20 C -0.164 4.164 21 C -0.134 4.134 22 C -0.156 4.156 23 C -0.103 4.103 24 C 0.058 3.942 25 N -0.686 5.686 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.015 0.985 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.024 0.976 50 H 0.069 0.931 51 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.332 7.808 -6.036 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.146 4.146 5 C -0.107 4.107 6 H 0.095 0.905 7 C -0.102 4.102 8 N -0.240 5.240 9 C -0.003 4.003 10 C -0.542 4.542 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.192 1.192 18 C -0.061 4.061 19 C -0.097 4.097 20 C -0.220 4.220 21 C -0.192 4.192 22 C -0.213 4.213 23 C -0.140 4.140 24 C -0.071 4.071 25 N -0.318 5.318 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.043 0.957 50 H 0.087 0.913 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.994 6.961 -6.119 18.485 hybrid contribution -0.427 0.363 1.097 1.232 sum -16.421 7.324 -5.022 18.668 Atomic orbital electron populations 1.21828 0.94846 1.02407 1.01254 1.21437 0.94558 0.95054 0.91348 0.94921 1.21717 0.96073 1.00978 0.95853 1.21439 0.93525 1.00388 0.95367 0.90525 1.22895 0.90670 0.99514 0.97149 1.62085 1.06418 1.05222 1.50295 1.20999 0.96586 0.91333 0.91374 1.21081 0.89531 1.21100 1.22448 0.90230 1.24871 0.94629 0.96873 0.96895 1.69893 1.05139 1.40722 1.38497 0.86930 0.80052 0.82705 0.80463 1.20336 1.21468 1.19160 1.22372 1.00856 0.89017 0.93905 1.21154 0.95671 0.95718 0.97142 1.22791 1.02958 0.98371 0.97916 1.21834 1.00558 0.97375 0.99468 1.22716 0.97440 1.00618 1.00508 1.21529 1.01168 0.99097 0.92247 1.21981 0.86945 0.98535 0.99646 1.60355 1.07838 1.59271 1.04335 0.91839 0.92293 0.93152 0.91445 0.91960 0.92446 0.91713 0.95282 0.96688 0.92821 0.88682 0.93049 0.90072 0.94628 0.90755 0.93319 0.93746 0.92109 0.91345 0.94148 0.92204 0.90095 0.91965 0.95725 0.91260 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.43 37.16 0.35 -0.95 16 2 C 0.09 0.92 3.04 -67.73 -0.21 0.71 16 3 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.11 -1.29 4.50 -26.65 -0.12 -1.41 16 5 C -0.09 -1.22 1.24 -90.50 -0.11 -1.34 16 6 H 0.08 1.10 4.02 -51.93 -0.21 0.89 16 7 C 0.03 0.41 3.20 -3.82 -0.01 0.40 16 8 N -0.52 -10.20 4.33 -236.07 -1.02 -11.22 16 9 C 0.12 2.85 3.15 -4.97 -0.02 2.83 16 10 C -0.50 -13.76 8.70 -34.44 -0.30 -14.06 16 11 H 0.08 2.37 6.67 -52.49 -0.35 2.02 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 14 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 18 C 0.07 1.24 4.57 -3.82 -0.02 1.22 16 19 C -0.10 -1.52 0.77 -154.51 -0.12 -1.64 16 20 C -0.16 -2.87 6.26 37.16 0.23 -2.64 16 21 C -0.13 -2.03 8.20 37.15 0.30 -1.73 16 22 C -0.16 -2.11 7.13 37.16 0.27 -1.84 16 23 C -0.10 -1.47 5.24 -26.65 -0.14 -1.61 16 24 C 0.06 0.70 6.55 -3.84 -0.03 0.67 16 25 N -0.69 -7.60 6.50 -106.77 -0.69 -8.30 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.70 6.67 -51.93 -0.35 0.35 16 31 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 32 H 0.07 1.03 2.10 -51.93 -0.11 0.92 16 33 H 0.03 0.67 2.35 -51.93 -0.12 0.55 16 34 H 0.02 0.37 7.56 -51.93 -0.39 -0.02 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.10 2.08 5.48 -51.93 -0.28 1.80 16 37 H 0.05 0.89 6.68 -51.93 -0.35 0.54 16 38 H 0.08 1.67 6.44 -51.93 -0.33 1.34 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.32 3.55 -51.93 -0.18 1.14 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 43 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 44 H 0.07 0.91 3.55 -51.93 -0.18 0.72 16 45 H 0.04 0.50 7.81 -51.92 -0.41 0.10 16 46 H 0.06 0.79 5.17 -51.93 -0.27 0.52 16 47 H 0.08 1.32 7.86 -51.93 -0.41 0.91 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.33 3.10 8.79 -39.29 -0.35 2.76 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -28.52 349.21 -9.31 -37.83 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.95 Total: 5.85 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.01 Total: -19.53 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.94 Total: -46.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.52 -9.31 -37.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.021 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds