Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46186 * 2 1 4 4 C 1.53036 * 109.45365 * 119.97090 * 2 1 3 5 5 C 1.53115 * 109.28031 * 179.19026 * 4 2 1 6 6 H 1.08999 * 109.57775 * 62.28464 * 5 4 2 7 7 C 1.53005 * 109.52517 * 182.44111 * 5 4 2 8 8 N 1.46903 * 109.46760 * 185.71060 * 7 5 4 9 9 C 1.46900 * 110.99326 * 191.48511 * 8 7 5 10 10 C 1.50702 * 109.46947 * 181.83713 * 9 8 7 11 11 H 1.08002 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00344 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00140 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99527 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47165 * 90.00292 * 14 12 10 16 16 H 1.48502 * 109.46805 * 209.99900 * 14 12 10 17 17 H 1.48502 * 109.47249 * 329.99814 * 14 12 10 18 18 C 1.46898 * 111.00188 * 67.53367 * 8 7 5 19 19 C 1.53007 * 109.47304 * 45.81372 * 18 8 7 20 20 C 1.52998 * 109.46836 * 38.66467 * 19 18 8 21 21 C 1.52994 * 109.47122 * 158.66584 * 19 18 8 22 22 C 1.53000 * 109.46666 * 278.66472 * 19 18 8 23 23 C 1.53121 * 109.15929 * 302.34896 * 5 4 2 24 24 C 1.53034 * 109.28034 * 57.65345 * 23 5 4 25 25 N 1.46841 * 109.46561 * 240.02035 * 2 1 3 26 26 H 1.08997 * 109.47372 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47246 * 299.97747 * 1 2 3 28 28 H 1.08999 * 109.47536 * 59.97859 * 1 2 3 29 29 H 1.09004 * 109.50638 * 59.24711 * 4 2 1 30 30 H 1.09004 * 109.50704 * 299.13371 * 4 2 1 31 31 H 1.08994 * 109.47031 * 65.71290 * 7 5 4 32 32 H 1.08996 * 109.47131 * 305.70803 * 7 5 4 33 33 H 1.09005 * 109.47249 * 301.83111 * 9 8 7 34 34 H 1.08997 * 109.47801 * 61.83878 * 9 8 7 35 35 H 0.97002 * 119.99901 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.47135 * 165.81617 * 18 8 7 37 37 H 1.08997 * 109.47037 * 285.81485 * 18 8 7 38 38 H 1.08993 * 109.47523 * 57.74007 * 20 19 18 39 39 H 1.08998 * 109.46881 * 177.74152 * 20 19 18 40 40 H 1.09005 * 109.47043 * 297.73882 * 20 19 18 41 41 H 1.09001 * 109.47214 * 59.99631 * 21 19 18 42 42 H 1.08998 * 109.46925 * 180.02562 * 21 19 18 43 43 H 1.09006 * 109.46694 * 300.00046 * 21 19 18 44 44 H 1.08998 * 109.47521 * 90.63287 * 22 19 18 45 45 H 1.09008 * 109.46506 * 210.62757 * 22 19 18 46 46 H 1.08998 * 109.47173 * 330.62576 * 22 19 18 47 47 H 1.09004 * 109.50202 * 177.59325 * 23 5 4 48 48 H 1.09004 * 109.50320 * 297.70943 * 23 5 4 49 49 H 1.08998 * 109.46454 * 60.83423 * 24 23 5 50 50 H 1.08995 * 109.46129 * 180.81941 * 24 23 5 51 51 H 1.00906 * 110.99822 * 54.14812 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2359 6 1 3.9465 0.2864 1.2680 7 6 4.0856 -1.5087 2.4521 8 7 5.5499 -1.4071 2.5126 9 6 6.1025 -2.3487 3.4954 10 6 7.5991 -2.1845 3.5619 11 1 8.0905 -1.4534 2.9370 12 6 8.3411 -2.9667 4.4214 13 7 9.6470 -2.8230 4.4798 14 14 7.4911 -4.2307 5.5029 15 1 7.4168 -5.5277 4.7837 16 1 8.2624 -4.4052 6.7599 17 1 6.1187 -3.7638 5.8250 18 6 5.9704 -0.0309 2.8077 19 6 5.1261 0.5253 3.9561 20 6 4.8853 -0.5751 4.9914 21 6 5.8656 1.6918 4.6142 22 6 3.7832 1.0154 3.4108 23 6 4.0545 -1.4191 -0.0464 24 6 3.4865 -0.6780 -1.2588 25 7 2.0193 -0.6918 -1.1992 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5135 0.8902 28 1 -0.3634 0.5141 -0.8898 29 1 1.6655 -1.7446 1.2578 30 1 1.6892 -0.1981 2.1400 31 1 3.7973 -2.5562 2.3659 32 1 3.6543 -1.0866 3.3598 33 1 5.6709 -2.1459 4.4756 34 1 5.8620 -3.3689 3.1965 35 1 10.1689 -3.3731 5.0848 36 1 7.0220 -0.0259 3.0943 37 1 5.8324 0.5890 1.9219 38 1 5.8429 -0.9521 5.3504 39 1 4.3180 -0.1684 5.8286 40 1 4.3233 -1.3887 4.5328 41 1 6.0373 2.4757 3.8766 42 1 5.2644 2.0878 5.4326 43 1 6.8224 1.3426 5.0026 44 1 3.0579 0.2025 3.4469 45 1 3.4266 1.8477 4.0177 46 1 3.9084 1.3452 2.3795 47 1 5.1437 -1.3952 -0.0827 48 1 3.7121 -2.4539 -0.0591 49 1 3.8404 0.3529 -1.2530 50 1 3.8173 -1.1704 -2.1732 51 1 1.6196 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576599720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = 20.202139 kcal Electronic energy + Delta-G solvation = -25028.677186 eV Core-core repulsion = 21963.552196 eV Total energy + Delta-G solvation = -3065.124990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54452 -39.27910 -35.52135 -34.82589 -33.54849 -33.01477 -29.92513 -29.16686 -28.21688 -27.57740 -27.15899 -25.34739 -23.35139 -22.38636 -21.22318 -20.63162 -19.60158 -18.94661 -17.21908 -16.82307 -16.59014 -16.40960 -15.88033 -15.51267 -15.24677 -15.01245 -14.79456 -14.52666 -14.26809 -14.05378 -13.85145 -13.30025 -13.11380 -13.05568 -12.87988 -12.67660 -12.62321 -12.58240 -12.54147 -12.31447 -12.23910 -12.05042 -11.96298 -11.83341 -11.66991 -11.53674 -11.42235 -11.24368 -11.04040 -10.83163 -10.70254 -10.67958 -9.29723 -8.51203 -8.23165 -6.22416 1.34118 1.34666 1.44752 2.36239 3.11145 3.32133 3.37958 3.86423 3.95457 3.96080 4.01384 4.06447 4.16639 4.29613 4.48246 4.51820 4.58143 4.59077 4.66543 4.69610 4.74951 4.80428 4.86294 4.87593 4.89112 4.94498 4.96681 5.00757 5.02611 5.10985 5.13670 5.16011 5.18243 5.19985 5.28301 5.30547 5.41456 5.43154 5.48974 5.50667 5.55581 5.64081 5.65788 5.70890 6.11394 6.20754 6.54052 6.61502 6.81519 6.86710 7.39276 8.93053 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.005213 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.003166 B = 5370.209251 C = 5885.841684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.036 0.964 4 C -0.103 4.103 5 C -0.079 4.079 6 H 0.078 0.922 7 C 0.028 3.972 8 N -0.532 5.532 9 C 0.132 3.868 10 C -0.500 4.500 11 H 0.038 0.962 12 C 0.009 3.991 13 N -0.952 5.952 14 Si 0.936 3.064 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.246 1.246 18 C 0.073 3.927 19 C -0.092 4.092 20 C -0.162 4.162 21 C -0.132 4.132 22 C -0.148 4.148 23 C -0.101 4.101 24 C 0.065 3.935 25 N -0.691 5.691 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.027 0.973 50 H 0.074 0.926 51 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.034 8.801 -5.853 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.141 4.141 5 C -0.098 4.098 6 H 0.096 0.904 7 C -0.099 4.099 8 N -0.254 5.254 9 C 0.006 3.994 10 C -0.538 4.538 11 H 0.057 0.943 12 C -0.188 4.188 13 N -0.594 5.594 14 Si 0.761 3.239 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.169 1.169 18 C -0.055 4.055 19 C -0.094 4.094 20 C -0.219 4.219 21 C -0.189 4.189 22 C -0.204 4.204 23 C -0.139 4.139 24 C -0.064 4.064 25 N -0.324 5.324 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.727 7.971 -5.956 22.094 hybrid contribution 0.784 0.113 0.957 1.242 sum -18.943 8.084 -4.999 21.194 Atomic orbital electron populations 1.21781 0.93157 1.02395 1.02461 1.21468 0.95846 0.94735 0.90361 0.94641 1.21680 0.93971 1.01033 0.97420 1.21355 0.95179 0.99610 0.93630 0.90436 1.22975 0.88228 0.99611 0.99088 1.61986 1.08869 1.05235 1.49310 1.20812 0.93930 0.91744 0.92943 1.21304 0.91888 1.19521 1.21079 0.94347 1.25726 0.95168 0.99238 0.98629 1.70050 1.06966 1.42372 1.39982 0.85873 0.79864 0.79793 0.78399 1.19886 1.21151 1.16910 1.22230 0.98878 0.88841 0.95589 1.21102 0.96997 0.95568 0.95744 1.22696 1.01151 0.98871 0.99138 1.21803 0.99395 0.97311 1.00429 1.22598 0.95315 1.01424 1.01037 1.21448 0.99558 0.98876 0.94050 1.21841 0.87792 0.98259 0.98556 1.60313 1.06961 1.59837 1.05307 0.92436 0.91179 0.91933 0.92252 0.90450 0.93440 0.90350 0.94003 0.97698 0.92805 0.93125 0.91826 0.93854 0.92099 0.90932 0.91991 0.91560 0.94965 0.90791 0.92040 0.91640 0.92839 0.93343 0.95447 0.90708 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.43 71.98 0.68 -1.31 16 2 C 0.09 1.55 3.04 44.94 0.14 1.69 16 3 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.10 -2.16 4.50 30.64 0.14 -2.02 16 5 C -0.08 -2.06 1.24 -10.71 -0.01 -2.07 16 6 H 0.08 2.04 4.02 -2.39 -0.01 2.03 16 7 C 0.03 0.88 3.20 86.30 0.28 1.16 16 8 N -0.53 -21.27 4.33 -900.78 -3.90 -25.18 16 9 C 0.13 6.25 3.15 85.56 0.27 6.52 16 10 C -0.50 -28.66 8.70 25.60 0.22 -28.44 16 11 H 0.04 2.47 6.67 -2.91 -0.02 2.45 16 12 C 0.01 0.52 5.47 84.66 0.46 0.98 16 13 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 14 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 15 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 17 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 18 C 0.07 2.75 4.57 86.31 0.39 3.15 16 19 C -0.09 -2.83 0.77 -52.18 -0.04 -2.87 16 20 C -0.16 -5.44 6.26 71.98 0.45 -4.99 16 21 C -0.13 -3.82 8.20 71.98 0.59 -3.23 16 22 C -0.15 -3.43 7.13 71.98 0.51 -2.92 16 23 C -0.10 -2.87 5.24 30.65 0.16 -2.71 16 24 C 0.06 1.46 6.55 86.33 0.57 2.03 16 25 N -0.69 -13.57 6.50 -491.72 -3.20 -16.77 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.41 6.67 -2.38 -0.02 1.40 16 31 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 32 H 0.08 2.29 2.10 -2.39 -0.01 2.29 16 33 H 0.04 1.92 2.35 -2.38 -0.01 1.92 16 34 H 0.00 0.25 7.56 -2.39 -0.02 0.23 16 35 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.05 2.36 5.48 -2.39 -0.01 2.35 16 37 H 0.06 2.21 6.68 -2.39 -0.02 2.19 16 38 H 0.04 1.78 6.44 -2.39 -0.02 1.77 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 2.44 3.55 -2.38 -0.01 2.43 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 43 H 0.03 1.09 8.13 -2.38 -0.02 1.07 16 44 H 0.07 1.65 3.55 -2.39 -0.01 1.65 16 45 H 0.06 1.23 7.81 -2.38 -0.02 1.21 16 46 H 0.06 1.49 5.17 -2.39 -0.01 1.47 16 47 H 0.05 1.79 7.86 -2.38 -0.02 1.77 16 48 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.35 5.43 8.79 -89.69 -0.79 4.65 16 Total: -1.00 -64.91 349.21 -0.04 -64.95 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.07 Total: 25.31 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.81 Total: -35.04 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -6.80 Total: -101.81 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -64.91 -0.04 -64.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.155 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds