Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46057 * 2 1 4 4 C 1.53037 * 109.46310 * 240.02320 * 2 1 3 5 5 C 1.53104 * 109.29028 * 299.17758 * 4 2 1 6 6 H 1.09000 * 109.52870 * 62.23718 * 5 4 2 7 7 C 1.52994 * 109.57542 * 182.40480 * 5 4 2 8 8 N 1.46909 * 109.46933 * 184.70820 * 7 5 4 9 9 C 1.46898 * 110.99661 * 184.69649 * 8 7 5 10 10 C 1.50709 * 109.46741 * 190.51926 * 9 8 7 11 11 H 1.07998 * 119.99785 * 4.68978 * 10 9 8 12 12 C 1.37867 * 119.99924 * 184.69302 * 10 9 8 13 13 N 1.31511 * 120.00420 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99838 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47056 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47065 * 119.99588 * 14 12 10 17 17 H 1.48500 * 109.46925 * 239.99312 * 14 12 10 18 18 C 1.46900 * 111.00043 * 60.73865 * 8 7 5 19 19 C 1.52997 * 109.46973 * 52.29562 * 18 8 7 20 20 C 1.53004 * 109.47215 * 35.56786 * 19 18 8 21 21 C 1.52994 * 109.47056 * 155.56801 * 19 18 8 22 22 C 1.52998 * 109.47320 * 275.56972 * 19 18 8 23 23 C 1.53123 * 109.15165 * 302.33676 * 5 4 2 24 24 C 1.53039 * 109.27791 * 57.65247 * 23 5 4 25 25 N 1.46841 * 109.52480 * 300.82108 * 24 23 5 26 26 H 1.09000 * 109.46852 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.47138 * 59.99456 * 1 2 3 28 28 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.49985 * 59.10082 * 4 2 1 30 30 H 1.08997 * 109.50374 * 179.22226 * 4 2 1 31 31 H 1.08998 * 109.47238 * 304.70567 * 7 5 4 32 32 H 1.09001 * 109.47401 * 64.70637 * 7 5 4 33 33 H 1.08993 * 109.47550 * 310.51432 * 9 8 7 34 34 H 1.08996 * 109.47545 * 70.52523 * 9 8 7 35 35 H 0.97004 * 120.00398 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46634 * 172.29166 * 18 8 7 37 37 H 1.09001 * 109.47026 * 292.29595 * 18 8 7 38 38 H 1.08998 * 109.47212 * 58.29966 * 20 19 18 39 39 H 1.08999 * 109.47267 * 178.29983 * 20 19 18 40 40 H 1.09000 * 109.46884 * 298.29799 * 20 19 18 41 41 H 1.09002 * 109.47099 * 60.00194 * 21 19 18 42 42 H 1.09007 * 109.47240 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47231 * 299.99721 * 21 19 18 44 44 H 1.08996 * 109.47558 * 84.39104 * 22 19 18 45 45 H 1.08995 * 109.47466 * 204.39261 * 22 19 18 46 46 H 1.09008 * 109.46862 * 324.39388 * 22 19 18 47 47 H 1.09003 * 109.50217 * 297.71329 * 23 5 4 48 48 H 1.08999 * 109.53657 * 177.61360 * 23 5 4 49 49 H 1.09002 * 109.45905 * 180.80206 * 24 23 5 50 50 H 1.09002 * 109.44754 * 60.83461 * 24 23 5 51 51 H 1.00895 * 111.00127 * 297.63918 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 1.5442 -2.1694 -1.2359 6 1 0.4548 -2.1820 -1.2675 7 6 2.0997 -2.9131 -2.4521 8 7 1.5336 -4.2680 -2.4982 9 6 2.1288 -5.0503 -3.5898 10 6 1.3527 -6.3292 -3.7724 11 1 0.4584 -6.5054 -3.1931 12 6 1.7844 -7.2741 -4.6788 13 7 2.8731 -7.0593 -5.3845 14 14 0.8219 -8.8590 -4.9056 15 1 -0.3554 -8.8570 -4.0006 16 1 0.3636 -8.9625 -6.3144 17 1 1.6927 -10.0175 -4.5819 18 6 0.0703 -4.2233 -2.6195 19 6 -0.3166 -3.3267 -3.7973 20 6 0.7115 -3.4864 -4.9192 21 6 -1.6999 -3.7296 -4.3121 22 6 -0.3482 -1.8674 -3.3386 23 6 2.0269 -2.8532 0.0463 24 6 1.5174 -2.0706 1.2588 25 7 2.0193 -0.6919 1.1993 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6637 -0.2165 -2.1399 30 1 3.1298 -0.7093 -1.2576 31 1 1.8299 -2.3755 -3.3611 32 1 3.1852 -2.9753 -2.3754 33 1 2.0959 -4.4706 -4.5122 34 1 3.1646 -5.2857 -3.3453 35 1 3.1766 -7.7239 -6.0225 36 1 -0.3111 -5.2302 -2.7888 37 1 -0.3583 -3.8219 -1.7012 38 1 0.7558 -4.5316 -5.2253 39 1 0.4196 -2.8707 -5.7699 40 1 1.6915 -3.1707 -4.5615 41 1 -2.4323 -3.6157 -3.5129 42 1 -1.9757 -3.0905 -5.1509 43 1 -1.6773 -4.7691 -4.6389 44 1 0.6575 -1.4499 -3.3855 45 1 -1.0095 -1.2960 -3.9900 46 1 -0.7152 -1.8167 -2.3134 47 1 3.1166 -2.8751 0.0591 48 1 1.6419 -3.8723 0.0831 49 1 1.8712 -2.5468 2.1732 50 1 0.4274 -2.0610 1.2527 51 1 3.0271 -0.6718 1.2425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576599722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 44.019385 kcal Electronic energy + Delta-G solvation = -25345.264145 eV Core-core repulsion = 22281.171948 eV Total energy + Delta-G solvation = -3064.092197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28472 -38.45567 -33.85810 -33.14573 -31.69845 -31.51310 -27.92528 -27.84303 -27.20094 -26.28700 -25.60286 -23.86882 -22.51340 -21.37059 -19.89255 -19.07480 -18.25191 -16.60322 -16.13182 -15.33241 -14.90787 -14.83547 -14.61413 -14.05096 -13.96930 -13.87806 -13.24445 -13.00952 -12.91412 -12.57041 -12.40651 -12.09914 -11.90119 -11.79453 -11.57515 -11.39685 -11.21210 -11.07642 -10.97537 -10.90835 -10.79415 -10.70852 -10.58681 -10.38210 -10.26310 -10.02982 -9.91666 -9.73175 -9.51032 -9.38958 -8.83953 -8.43011 -8.22300 -6.75134 -6.02787 -4.01655 3.28885 3.37400 3.40483 4.31234 4.42314 4.78513 4.96147 5.03770 5.23364 5.25826 5.33567 5.37587 5.43424 5.45112 5.47972 5.56872 5.64579 5.72145 5.72303 5.90147 5.93008 6.00443 6.09584 6.09878 6.15898 6.17674 6.19890 6.24135 6.27594 6.28592 6.31232 6.39213 6.50702 6.57085 6.60102 6.68230 6.79215 6.83098 6.90109 7.02094 7.13833 7.31722 7.42660 7.50076 7.57160 7.80891 8.14376 8.34913 8.67061 9.06282 9.60971 11.08145 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.005182 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.522557 B = 5401.990009 C = 5896.859027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.091 4.091 6 H 0.086 0.914 7 C 0.038 3.962 8 N -0.528 5.528 9 C 0.145 3.855 10 C -0.505 4.505 11 H 0.065 0.935 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.065 3.935 19 C -0.092 4.092 20 C -0.164 4.164 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.141 4.141 24 C 0.051 3.949 25 N -0.684 5.684 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.039 0.961 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 13.021 7.592 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.188 4.188 5 C -0.109 4.109 6 H 0.104 0.896 7 C -0.090 4.090 8 N -0.251 5.251 9 C 0.021 3.979 10 C -0.543 4.543 11 H 0.083 0.917 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.063 4.063 19 C -0.094 4.094 20 C -0.220 4.220 21 C -0.192 4.192 22 C -0.209 4.209 23 C -0.180 4.180 24 C -0.078 4.078 25 N -0.313 5.313 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.727 12.940 8.329 16.099 hybrid contribution 0.030 -1.037 -1.756 2.039 sum -4.697 11.904 6.573 14.386 Atomic orbital electron populations 1.21915 0.94809 1.02340 1.01386 1.21488 0.95727 0.97135 0.88152 0.90718 1.22333 1.00561 0.97014 0.98883 1.21472 1.01599 0.92680 0.95171 0.89608 1.22593 0.98607 0.91371 0.96419 1.62293 1.03750 1.10791 1.48253 1.20828 0.95115 0.92656 0.89307 1.21329 1.10116 1.01974 1.20907 0.91708 1.24945 0.95074 0.98188 0.96159 1.69965 1.22861 1.35253 1.25449 0.86586 0.80093 0.83869 0.77753 1.19768 1.21208 1.21129 1.22381 0.89818 1.00300 0.93812 1.21160 0.95658 0.95080 0.97517 1.22960 0.98215 1.04401 0.96436 1.21830 0.96124 1.01579 0.99659 1.22585 1.01689 0.96581 1.00089 1.22153 1.00424 1.00964 0.94435 1.22101 1.00570 0.87591 0.97574 1.60739 1.14908 1.16422 1.39224 0.92476 0.92541 0.91996 0.91799 0.92405 0.92952 0.92740 0.94067 0.96038 0.93117 0.89082 0.93478 0.88403 0.95667 0.90752 0.93649 0.93846 0.92235 0.91583 0.94220 0.92773 0.92852 0.90112 0.91398 0.90985 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.59 37.16 0.32 -1.22 16 2 C 0.09 0.91 3.69 -67.72 -0.25 0.66 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.75 4.77 -26.66 -0.13 -1.87 16 5 C -0.09 -1.24 0.80 -90.51 -0.07 -1.32 16 6 H 0.09 1.21 2.10 -51.93 -0.11 1.10 16 7 C 0.04 0.65 3.42 -3.82 -0.01 0.63 16 8 N -0.53 -10.60 4.40 -236.07 -1.04 -11.64 16 9 C 0.15 3.55 4.23 -4.97 -0.02 3.53 16 10 C -0.50 -13.32 7.33 -34.44 -0.25 -13.57 16 11 H 0.07 1.70 5.52 -52.49 -0.29 1.41 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.07 1.21 4.54 -3.83 -0.02 1.19 16 19 C -0.09 -1.55 0.77 -154.51 -0.12 -1.67 16 20 C -0.16 -3.15 6.18 37.16 0.23 -2.92 16 21 C -0.13 -2.11 8.22 37.15 0.31 -1.80 16 22 C -0.15 -2.17 7.18 37.16 0.27 -1.90 16 23 C -0.14 -1.94 5.22 -26.65 -0.14 -2.08 16 24 C 0.05 0.60 6.26 -3.84 -0.02 0.58 16 25 N -0.68 -7.55 6.67 -106.76 -0.71 -8.27 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.70 4.80 -51.93 -0.25 0.45 16 29 H 0.06 0.74 6.98 -51.93 -0.36 0.38 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.90 2.69 -51.93 -0.14 0.76 16 32 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.04 1.03 3.27 -60.76 -0.20 0.83 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.09 1.92 4.96 -51.93 -0.26 1.66 16 37 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 38 H 0.10 2.25 5.50 -51.93 -0.29 1.96 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.47 3.28 -51.93 -0.17 1.30 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 44 H 0.07 0.94 3.59 -51.93 -0.19 0.76 16 45 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 46 H 0.05 0.73 5.71 -51.92 -0.30 0.43 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.29 7.83 -51.93 -0.41 0.88 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 51 H 0.34 3.47 8.86 -39.29 -0.35 3.13 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -26.97 343.25 -9.44 -36.41 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -8.56 Total: 7.54 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.01 Total: -20.28 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -1.02 Total: -44.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.97 -9.44 -36.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.430 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds