Wall clock time and date at job start Tue Mar 31 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46057 * 2 1 4 4 C 1.53037 * 109.46310 * 240.02320 * 2 1 3 5 5 C 1.53104 * 109.29028 * 299.17758 * 4 2 1 6 6 H 1.09000 * 109.52870 * 62.23718 * 5 4 2 7 7 C 1.52994 * 109.57542 * 182.40480 * 5 4 2 8 8 N 1.46909 * 109.46933 * 184.70820 * 7 5 4 9 9 C 1.46898 * 110.99661 * 184.69649 * 8 7 5 10 10 C 1.50709 * 109.46741 * 190.51926 * 9 8 7 11 11 H 1.07998 * 119.99785 * 4.68978 * 10 9 8 12 12 C 1.37867 * 119.99924 * 184.69302 * 10 9 8 13 13 N 1.31511 * 120.00420 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99838 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47056 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47065 * 119.99588 * 14 12 10 17 17 H 1.48500 * 109.46925 * 239.99312 * 14 12 10 18 18 C 1.46900 * 111.00043 * 60.73865 * 8 7 5 19 19 C 1.52997 * 109.46973 * 52.29562 * 18 8 7 20 20 C 1.53004 * 109.47215 * 35.56786 * 19 18 8 21 21 C 1.52994 * 109.47056 * 155.56801 * 19 18 8 22 22 C 1.52998 * 109.47320 * 275.56972 * 19 18 8 23 23 C 1.53123 * 109.15165 * 302.33676 * 5 4 2 24 24 C 1.53039 * 109.27791 * 57.65247 * 23 5 4 25 25 N 1.46841 * 109.52480 * 300.82108 * 24 23 5 26 26 H 1.09000 * 109.46852 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.47138 * 59.99456 * 1 2 3 28 28 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.49985 * 59.10082 * 4 2 1 30 30 H 1.08997 * 109.50374 * 179.22226 * 4 2 1 31 31 H 1.08998 * 109.47238 * 304.70567 * 7 5 4 32 32 H 1.09001 * 109.47401 * 64.70637 * 7 5 4 33 33 H 1.08993 * 109.47550 * 310.51432 * 9 8 7 34 34 H 1.08996 * 109.47545 * 70.52523 * 9 8 7 35 35 H 0.97004 * 120.00398 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46634 * 172.29166 * 18 8 7 37 37 H 1.09001 * 109.47026 * 292.29595 * 18 8 7 38 38 H 1.08998 * 109.47212 * 58.29966 * 20 19 18 39 39 H 1.08999 * 109.47267 * 178.29983 * 20 19 18 40 40 H 1.09000 * 109.46884 * 298.29799 * 20 19 18 41 41 H 1.09002 * 109.47099 * 60.00194 * 21 19 18 42 42 H 1.09007 * 109.47240 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47231 * 299.99721 * 21 19 18 44 44 H 1.08996 * 109.47558 * 84.39104 * 22 19 18 45 45 H 1.08995 * 109.47466 * 204.39261 * 22 19 18 46 46 H 1.09008 * 109.46862 * 324.39388 * 22 19 18 47 47 H 1.09003 * 109.50217 * 297.71329 * 23 5 4 48 48 H 1.08999 * 109.53657 * 177.61360 * 23 5 4 49 49 H 1.09002 * 109.45905 * 180.80206 * 24 23 5 50 50 H 1.09002 * 109.44754 * 60.83461 * 24 23 5 51 51 H 1.00895 * 111.00127 * 297.63918 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 1.5442 -2.1694 -1.2359 6 1 0.4548 -2.1820 -1.2675 7 6 2.0997 -2.9131 -2.4521 8 7 1.5336 -4.2680 -2.4982 9 6 2.1288 -5.0503 -3.5898 10 6 1.3527 -6.3292 -3.7724 11 1 0.4584 -6.5054 -3.1931 12 6 1.7844 -7.2741 -4.6788 13 7 2.8731 -7.0593 -5.3845 14 14 0.8219 -8.8590 -4.9056 15 1 -0.3554 -8.8570 -4.0006 16 1 0.3636 -8.9625 -6.3144 17 1 1.6927 -10.0175 -4.5819 18 6 0.0703 -4.2233 -2.6195 19 6 -0.3166 -3.3267 -3.7973 20 6 0.7115 -3.4864 -4.9192 21 6 -1.6999 -3.7296 -4.3121 22 6 -0.3482 -1.8674 -3.3386 23 6 2.0269 -2.8532 0.0463 24 6 1.5174 -2.0706 1.2588 25 7 2.0193 -0.6919 1.1993 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6637 -0.2165 -2.1399 30 1 3.1298 -0.7093 -1.2576 31 1 1.8299 -2.3755 -3.3611 32 1 3.1852 -2.9753 -2.3754 33 1 2.0959 -4.4706 -4.5122 34 1 3.1646 -5.2857 -3.3453 35 1 3.1766 -7.7239 -6.0225 36 1 -0.3111 -5.2302 -2.7888 37 1 -0.3583 -3.8219 -1.7012 38 1 0.7558 -4.5316 -5.2253 39 1 0.4196 -2.8707 -5.7699 40 1 1.6915 -3.1707 -4.5615 41 1 -2.4323 -3.6157 -3.5129 42 1 -1.9757 -3.0905 -5.1509 43 1 -1.6773 -4.7691 -4.6389 44 1 0.6575 -1.4499 -3.3855 45 1 -1.0095 -1.2960 -3.9900 46 1 -0.7152 -1.8167 -2.3134 47 1 3.1166 -2.8751 0.0591 48 1 1.6419 -3.8723 0.0831 49 1 1.8712 -2.5468 2.1732 50 1 0.4274 -2.0610 1.2527 51 1 3.0271 -0.6718 1.2425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576599722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:56 Heat of formation + Delta-G solvation = 26.913429 kcal Electronic energy + Delta-G solvation = -25346.005915 eV Core-core repulsion = 22281.171948 eV Total energy + Delta-G solvation = -3064.833967 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62693 -39.62321 -35.43134 -34.77823 -33.12370 -32.60296 -29.59993 -29.06498 -28.28229 -27.81231 -27.03090 -25.44650 -23.54161 -22.84236 -21.38711 -20.07351 -19.63429 -18.53464 -17.22688 -16.81739 -16.60257 -16.25333 -15.69410 -15.44838 -15.38802 -15.06344 -14.69985 -14.29418 -14.16055 -13.97991 -13.65772 -13.43687 -13.11287 -13.07849 -12.91404 -12.69222 -12.60538 -12.50411 -12.39434 -12.25805 -12.22989 -12.12074 -11.89784 -11.80870 -11.69668 -11.50770 -11.31519 -11.24260 -10.96097 -10.76641 -10.67850 -10.51442 -9.17372 -8.41806 -8.14894 -6.19263 1.37547 1.39846 1.50691 2.41445 3.18588 3.40682 3.52301 3.80893 3.99893 4.03314 4.05752 4.10445 4.22794 4.29097 4.45130 4.51294 4.58531 4.64992 4.71786 4.74075 4.78713 4.82414 4.84214 4.91352 4.92651 4.94200 5.03330 5.04153 5.07020 5.12478 5.20045 5.22796 5.27198 5.31299 5.33535 5.39857 5.46187 5.48676 5.53459 5.58273 5.65397 5.68250 5.75168 5.77481 6.14452 6.22244 6.53265 6.57730 6.88193 7.00164 7.47612 8.96730 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.005182 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.522557 B = 5401.990009 C = 5896.859027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.090 0.910 4 C -0.142 4.142 5 C -0.079 4.079 6 H 0.090 0.910 7 C 0.042 3.958 8 N -0.536 5.536 9 C 0.160 3.840 10 C -0.507 4.507 11 H 0.065 0.935 12 C 0.005 3.995 13 N -0.933 5.933 14 Si 0.952 3.048 15 H -0.264 1.264 16 H -0.281 1.281 17 H -0.285 1.285 18 C 0.070 3.930 19 C -0.089 4.089 20 C -0.156 4.156 21 C -0.131 4.131 22 C -0.144 4.144 23 C -0.137 4.137 24 C 0.060 3.940 25 N -0.683 5.683 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.039 0.961 34 H -0.024 1.024 35 H 0.259 0.741 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 14.964 8.569 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 H 0.108 0.892 4 C -0.182 4.182 5 C -0.097 4.097 6 H 0.108 0.892 7 C -0.086 4.086 8 N -0.259 5.259 9 C 0.034 3.966 10 C -0.545 4.545 11 H 0.083 0.917 12 C -0.192 4.192 13 N -0.574 5.574 14 Si 0.778 3.222 15 H -0.188 1.188 16 H -0.207 1.207 17 H -0.211 1.211 18 C -0.058 4.058 19 C -0.091 4.091 20 C -0.212 4.212 21 C -0.189 4.189 22 C -0.201 4.201 23 C -0.176 4.176 24 C -0.069 4.069 25 N -0.312 5.312 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.056 0.944 34 H -0.006 1.006 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.699 14.897 9.324 18.808 hybrid contribution 0.677 -1.610 -2.046 2.690 sum -6.022 13.287 7.278 16.303 Atomic orbital electron populations 1.21905 0.94266 1.01931 1.02183 1.21540 0.96137 0.97534 0.87042 0.89225 1.22294 1.00397 0.95390 1.00114 1.21365 1.01510 0.93614 0.93224 0.89197 1.22637 0.97469 0.90027 0.98467 1.62143 1.04907 1.12486 1.46359 1.20535 0.92655 0.92989 0.90376 1.21615 1.09963 1.02630 1.20270 0.91692 1.25729 0.95976 1.01448 0.96075 1.70092 1.24546 1.36411 1.26369 0.85586 0.78912 0.79824 0.77845 1.18820 1.20740 1.21116 1.22318 0.88419 0.99398 0.95660 1.21103 0.95492 0.96781 0.95735 1.22743 0.98718 1.01734 0.98002 1.21794 0.95752 1.00440 1.00902 1.22471 1.02210 0.94201 1.01201 1.22100 0.99709 1.00026 0.95782 1.22002 1.00604 0.87743 0.96567 1.60762 1.15397 1.15614 1.39393 0.92074 0.91444 0.92918 0.90993 0.92762 0.92502 0.94754 0.94419 1.00627 0.93175 0.91938 0.91402 0.92701 0.94127 0.91851 0.91547 0.92342 0.94521 0.91710 0.92422 0.91388 0.93897 0.92628 0.90773 0.90738 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.59 71.98 0.62 -1.90 16 2 C 0.09 1.59 3.69 44.94 0.17 1.76 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.14 -3.02 4.77 30.64 0.15 -2.87 16 5 C -0.08 -2.05 0.80 -10.72 -0.01 -2.06 16 6 H 0.09 2.30 2.10 -2.39 -0.01 2.30 16 7 C 0.04 1.42 3.42 86.30 0.29 1.72 16 8 N -0.54 -22.13 4.40 -900.79 -3.97 -26.09 16 9 C 0.16 8.22 4.23 85.56 0.36 8.59 16 10 C -0.51 -27.72 7.33 25.60 0.19 -27.54 16 11 H 0.07 3.51 5.52 -2.91 -0.02 3.49 16 12 C 0.01 0.30 5.46 84.65 0.46 0.76 16 13 N -0.93 -55.84 13.29 21.44 0.28 -55.55 16 14 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 15 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 18 C 0.07 2.58 4.54 86.30 0.39 2.97 16 19 C -0.09 -2.88 0.77 -52.18 -0.04 -2.92 16 20 C -0.16 -6.01 6.18 71.98 0.44 -5.56 16 21 C -0.13 -3.87 8.22 71.98 0.59 -3.28 16 22 C -0.14 -3.63 7.18 71.98 0.52 -3.11 16 23 C -0.14 -3.69 5.22 30.65 0.16 -3.53 16 24 C 0.06 1.31 6.26 86.33 0.54 1.85 16 25 N -0.68 -13.32 6.67 -491.69 -3.28 -16.60 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.01 4.80 -2.39 -0.01 1.00 16 29 H 0.07 1.44 6.98 -2.39 -0.02 1.43 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.93 2.69 -2.39 -0.01 1.92 16 32 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 33 H 0.04 2.00 3.27 -10.68 -0.03 1.97 16 34 H -0.02 -1.46 8.14 -2.39 -0.02 -1.47 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.06 2.66 4.96 -2.39 -0.01 2.65 16 37 H 0.07 2.21 6.25 -2.39 -0.01 2.20 16 38 H 0.05 2.60 5.50 -2.39 -0.01 2.59 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 2.56 3.28 -2.39 -0.01 2.56 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.54 8.12 -2.38 -0.02 1.52 16 43 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 44 H 0.06 1.66 3.59 -2.39 -0.01 1.65 16 45 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 46 H 0.07 1.55 5.71 -2.38 -0.01 1.54 16 47 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16 49 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.07 1.61 6.19 -2.39 -0.01 1.60 16 51 H 0.34 6.27 8.86 -89.70 -0.79 5.47 16 Total: -1.00 -60.44 343.25 0.01 -60.43 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.11 Total: 26.54 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 4.83 Total: -35.12 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -6.96 Total: -98.25 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.44 0.01 -60.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.346 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds