Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46308 * 2 1 4 4 C 1.53039 * 109.46632 * 119.97732 * 2 1 3 5 5 C 1.53124 * 109.27663 * 60.82560 * 4 2 1 6 6 H 1.09000 * 109.52394 * 297.75164 * 5 4 2 7 7 C 1.52994 * 109.52292 * 177.62231 * 5 4 2 8 8 N 1.46901 * 109.46900 * 62.88378 * 7 5 4 9 9 C 1.46903 * 110.99949 * 190.13843 * 8 7 5 10 10 C 1.50698 * 109.47049 * 170.04828 * 9 8 7 11 11 H 1.07994 * 120.00227 * 2.21830 * 10 9 8 12 12 C 1.37880 * 119.99907 * 182.21660 * 10 9 8 13 13 N 1.31512 * 120.00074 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99988 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46969 * 89.99698 * 14 12 10 16 16 H 1.48502 * 109.46982 * 209.99489 * 14 12 10 17 17 H 1.48498 * 109.46818 * 329.99886 * 14 12 10 18 18 C 1.46904 * 110.99862 * 66.18624 * 8 7 5 19 19 C 1.52996 * 109.47277 * 80.51687 * 18 8 7 20 20 C 1.53001 * 109.47486 * 77.70667 * 19 18 8 21 21 C 1.52999 * 109.47011 * 197.71160 * 19 18 8 22 22 C 1.53004 * 109.46787 * 317.70708 * 19 18 8 23 23 C 1.53125 * 109.15918 * 57.65362 * 5 4 2 24 24 C 1.53035 * 109.27876 * 302.34956 * 23 5 4 25 25 N 1.46837 * 109.52668 * 59.17893 * 24 23 5 26 26 H 1.09002 * 109.46993 * 300.01549 * 1 2 3 27 27 H 1.08997 * 109.47237 * 60.01977 * 1 2 3 28 28 H 1.09007 * 109.46873 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.50045 * 300.88976 * 4 2 1 30 30 H 1.08998 * 109.50613 * 180.76897 * 4 2 1 31 31 H 1.09003 * 109.46975 * 182.87867 * 7 5 4 32 32 H 1.09000 * 109.47492 * 302.88253 * 7 5 4 33 33 H 1.08997 * 109.46974 * 290.04713 * 9 8 7 34 34 H 1.08994 * 109.47086 * 50.04699 * 9 8 7 35 35 H 0.97001 * 120.00242 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46565 * 200.51036 * 18 8 7 37 37 H 1.08998 * 109.47056 * 320.50714 * 18 8 7 38 38 H 1.08994 * 109.46635 * 22.22855 * 20 19 18 39 39 H 1.09003 * 109.46819 * 142.22369 * 20 19 18 40 40 H 1.08998 * 109.47180 * 262.22769 * 20 19 18 41 41 H 1.08999 * 109.47274 * 60.00045 * 21 19 18 42 42 H 1.08999 * 109.47275 * 179.97438 * 21 19 18 43 43 H 1.09001 * 109.47245 * 299.99382 * 21 19 18 44 44 H 1.08996 * 109.46967 * 63.39632 * 22 19 18 45 45 H 1.09002 * 109.46765 * 183.39186 * 22 19 18 46 46 H 1.09000 * 109.47198 * 303.38952 * 22 19 18 47 47 H 1.09001 * 109.50010 * 62.28631 * 23 5 4 48 48 H 1.08997 * 109.50074 * 182.40463 * 23 5 4 49 49 H 1.09001 * 109.46171 * 299.15648 * 24 23 5 50 50 H 1.09004 * 109.45179 * 179.18772 * 24 23 5 51 51 H 1.00899 * 111.00634 * 174.16170 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0400 -0.7210 1.2499 5 6 1.5441 -2.1696 1.2355 6 1 0.4547 -2.1821 1.2673 7 6 2.0996 -2.9122 2.4524 8 7 1.5854 -2.2924 3.6810 9 6 2.2780 -2.8177 4.8652 10 6 1.9050 -1.9948 6.0714 11 1 1.1943 -1.1873 5.9754 12 6 2.4710 -2.2730 7.2975 13 7 2.1458 -1.5546 8.3500 14 14 3.7007 -3.6693 7.4634 15 1 5.0722 -3.1519 7.2259 16 1 3.6177 -4.2422 8.8310 17 1 3.3898 -4.7239 6.4652 18 6 0.1326 -2.4773 3.7956 19 6 -0.1624 -3.8792 4.3326 20 6 0.0813 -3.9087 5.8428 21 6 -1.6212 -4.2392 4.0443 22 6 0.7577 -4.8917 3.6476 23 6 2.0265 -2.8532 -0.0469 24 6 1.5170 -2.0704 -1.2591 25 7 2.0191 -0.6918 -1.1995 26 1 -0.3633 0.5141 0.8899 27 1 -0.3633 0.5135 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6639 -0.2164 2.1399 30 1 3.1299 -0.7094 1.2575 31 1 1.7882 -3.9561 2.4143 32 1 3.1882 -2.8573 2.4458 33 1 1.9842 -3.8546 5.0278 34 1 3.3554 -2.7656 4.7090 35 1 2.5443 -1.7500 9.2126 36 1 -0.2754 -1.7330 4.4795 37 1 -0.3271 -2.3597 2.8143 38 1 0.0172 -2.8961 6.2409 39 1 -0.6721 -4.5352 6.3202 40 1 1.0724 -4.3157 6.0430 41 1 -1.7948 -4.2183 2.9684 42 1 -1.8313 -5.2381 4.4264 43 1 -2.2768 -3.5179 4.5322 44 1 1.7943 -4.6709 3.9022 45 1 0.5069 -5.8972 3.9855 46 1 0.6274 -4.8283 2.5673 47 1 3.1162 -2.8752 -0.0598 48 1 1.6409 -3.8721 -0.0833 49 1 0.4270 -2.0606 -1.2532 50 1 1.8709 -2.5465 -2.1736 51 1 1.7758 -0.1818 -2.0354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576599724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = 37.188016 kcal Electronic energy + Delta-G solvation = -25160.980362 eV Core-core repulsion = 22096.591935 eV Total energy + Delta-G solvation = -3064.388427 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96015 -38.60509 -34.17970 -32.95964 -31.85591 -31.36384 -28.58207 -27.78717 -27.17261 -26.09789 -25.41384 -24.02386 -22.53908 -21.16492 -19.93247 -18.66946 -18.15100 -16.89748 -16.58314 -15.19226 -14.98157 -14.86988 -14.67957 -14.17653 -13.80675 -13.60038 -13.49866 -13.04592 -12.86680 -12.67553 -12.48777 -12.34417 -11.93575 -11.62571 -11.58743 -11.51558 -11.34245 -11.14198 -10.98596 -10.89511 -10.81588 -10.66123 -10.49651 -10.21019 -10.15556 -10.00568 -9.85608 -9.64406 -9.51096 -9.46883 -9.10728 -8.42807 -8.39664 -6.93616 -6.00007 -3.88868 3.29377 3.36932 3.38806 4.24435 4.45363 4.78256 4.92943 4.99144 5.17815 5.23653 5.30119 5.37254 5.41075 5.41602 5.49129 5.54866 5.59552 5.69596 5.74600 5.85287 5.92502 5.95386 5.99812 6.09478 6.10881 6.14742 6.16170 6.20060 6.26803 6.29802 6.39357 6.45932 6.51742 6.56769 6.68288 6.69164 6.78160 6.81011 6.89800 6.98951 7.07139 7.13591 7.29335 7.40032 7.69253 7.73756 8.05095 8.20498 8.75251 9.07379 9.62387 11.13303 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.005487 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.019133 B = 5101.600638 C = 5548.520083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 H 0.077 0.923 4 C -0.094 4.094 5 C -0.082 4.082 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.518 5.518 9 C 0.127 3.873 10 C -0.486 4.486 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.902 5.902 14 Si 0.864 3.136 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.268 1.268 18 C 0.078 3.922 19 C -0.096 4.096 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.162 4.162 23 C -0.112 4.112 24 C 0.057 3.943 25 N -0.684 5.684 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.018 0.982 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.031 0.969 50 H 0.066 0.934 51 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 -2.947 -16.728 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.029 4.029 3 H 0.095 0.905 4 C -0.132 4.132 5 C -0.101 4.101 6 H 0.085 0.915 7 C -0.108 4.108 8 N -0.240 5.240 9 C 0.002 3.998 10 C -0.524 4.524 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.542 5.542 14 Si 0.692 3.308 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.051 4.051 19 C -0.098 4.098 20 C -0.200 4.200 21 C -0.191 4.191 22 C -0.218 4.218 23 C -0.150 4.150 24 C -0.072 4.072 25 N -0.314 5.314 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.049 0.951 50 H 0.084 0.916 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.464 -2.594 -16.258 16.824 hybrid contribution -0.368 -1.453 0.021 1.499 sum -3.832 -4.047 -16.237 17.167 Atomic orbital electron populations 1.22543 0.98086 1.02161 1.01692 1.21643 0.92264 0.97755 0.91285 0.90516 1.21502 1.00852 0.94934 0.95935 1.21226 0.99889 0.95493 0.93444 0.91524 1.22906 0.99413 0.97958 0.90517 1.62145 1.03039 1.56995 1.01787 1.21053 0.93458 0.96466 0.88868 1.20878 1.25216 1.15999 0.90330 0.90315 1.24799 0.96438 0.96116 0.95940 1.69874 1.44301 1.40075 0.99985 0.87053 0.82699 0.83661 0.77372 1.20441 1.21428 1.19291 1.22201 0.89617 0.94259 0.98977 1.21154 0.94057 0.96622 0.97923 1.22623 0.99956 1.04967 0.92476 1.21851 0.96574 1.00625 1.00034 1.22726 1.01598 0.98462 0.99058 1.21610 1.01562 0.97826 0.94033 1.21893 0.97113 0.89627 0.98568 1.60505 1.63228 1.02898 1.04793 0.91772 0.93640 0.92113 0.89926 0.91889 0.92246 0.92161 0.95042 0.96872 0.92867 0.90742 0.93079 0.88151 0.96284 0.91736 0.93844 0.93529 0.92844 0.90184 0.93991 0.92888 0.91402 0.92288 0.95106 0.91571 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 8.58 37.16 0.32 -1.73 16 2 C 0.08 0.96 3.68 -67.72 -0.25 0.71 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.09 -1.35 4.73 -26.65 -0.13 -1.48 16 5 C -0.08 -1.13 1.87 -90.49 -0.17 -1.30 16 6 H 0.07 0.94 4.57 -51.93 -0.24 0.71 16 7 C 0.02 0.33 3.80 -3.83 -0.01 0.31 16 8 N -0.52 -10.00 4.11 -236.07 -0.97 -10.97 16 9 C 0.13 2.88 2.74 -4.98 -0.01 2.86 16 10 C -0.49 -12.83 5.80 -34.44 -0.20 -13.03 16 11 H 0.08 2.30 7.25 -52.49 -0.38 1.92 16 12 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 13 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 14 Si 0.86 21.12 26.54 -169.99 -4.51 16.61 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.24 6.59 56.52 0.37 -5.87 16 18 C 0.08 1.40 4.59 -3.82 -0.02 1.38 16 19 C -0.10 -1.65 0.77 -154.51 -0.12 -1.77 16 20 C -0.14 -2.93 7.23 37.16 0.27 -2.66 16 21 C -0.13 -1.95 8.17 37.16 0.30 -1.64 16 22 C -0.16 -2.64 6.33 37.16 0.24 -2.40 16 23 C -0.11 -1.34 5.38 -26.65 -0.14 -1.49 16 24 C 0.06 0.61 6.25 -3.84 -0.02 0.58 16 25 N -0.68 -7.56 6.65 -106.77 -0.71 -8.27 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.70 4.80 -51.93 -0.25 0.45 16 29 H 0.08 1.35 7.77 -51.93 -0.40 0.95 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.94 3.23 -51.93 -0.17 0.77 16 32 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 33 H 0.03 0.72 1.38 -51.93 -0.07 0.65 16 34 H 0.01 0.32 7.24 -51.93 -0.38 -0.06 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.50 6.88 -51.93 -0.36 1.14 16 37 H 0.05 0.82 5.71 -51.93 -0.30 0.53 16 38 H 0.10 2.35 5.08 -51.93 -0.26 2.09 16 39 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 40 H 0.06 1.43 4.22 -51.93 -0.22 1.21 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.45 3.82 -51.93 -0.20 1.25 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.78 6.51 -51.93 -0.34 0.44 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.03 0.32 6.19 -51.93 -0.32 0.00 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.33 3.08 8.90 -39.29 -0.35 2.73 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -27.61 344.34 -9.13 -36.74 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.86 Total: 6.64 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.04 Total: -19.89 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.91 Total: -45.29 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.51 Total: 16.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.61 -9.13 -36.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.925 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds