Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45536 * 240.02647 * 2 1 3 5 5 C 1.53120 * 109.27823 * 180.80793 * 4 2 1 6 6 H 1.09002 * 109.57459 * 297.71704 * 5 4 2 7 7 C 1.52998 * 109.52094 * 177.56096 * 5 4 2 8 8 N 1.46899 * 109.47067 * 175.32153 * 7 5 4 9 9 C 1.46900 * 111.00176 * 161.08285 * 8 7 5 10 10 C 1.50703 * 109.46928 * 199.69834 * 9 8 7 11 11 H 1.08000 * 120.00255 * 355.31753 * 10 9 8 12 12 C 1.37880 * 119.99990 * 175.32478 * 10 9 8 13 13 N 1.31512 * 120.00084 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99882 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46953 * 89.99936 * 14 12 10 16 16 H 1.48497 * 109.47104 * 210.00164 * 14 12 10 17 17 H 1.48498 * 109.47013 * 330.00503 * 14 12 10 18 18 C 1.46903 * 110.99908 * 285.03185 * 8 7 5 19 19 C 1.53000 * 109.46833 * 314.57742 * 18 8 7 20 20 C 1.52995 * 109.47443 * 83.97901 * 19 18 8 21 21 C 1.53004 * 109.46956 * 203.97798 * 19 18 8 22 22 C 1.52995 * 109.47452 * 323.97469 * 19 18 8 23 23 C 1.53124 * 109.15741 * 57.65494 * 5 4 2 24 24 C 1.53030 * 109.27877 * 302.34126 * 23 5 4 25 25 N 1.46841 * 109.46150 * 119.97605 * 2 1 3 26 26 H 1.08998 * 109.47186 * 300.02401 * 1 2 3 27 27 H 1.09005 * 109.46953 * 60.02386 * 1 2 3 28 28 H 1.08995 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.50321 * 60.86680 * 4 2 1 30 30 H 1.09000 * 109.50036 * 300.75348 * 4 2 1 31 31 H 1.08997 * 109.47740 * 55.31436 * 7 5 4 32 32 H 1.09004 * 109.46878 * 295.31371 * 7 5 4 33 33 H 1.08998 * 109.46744 * 319.69329 * 9 8 7 34 34 H 1.08990 * 109.47326 * 79.69590 * 9 8 7 35 35 H 0.97000 * 119.99690 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47126 * 74.57269 * 18 8 7 37 37 H 1.08991 * 109.47365 * 194.57650 * 18 8 7 38 38 H 1.09003 * 109.47131 * 64.77129 * 20 19 18 39 39 H 1.08998 * 109.47360 * 184.77725 * 20 19 18 40 40 H 1.09003 * 109.46901 * 304.77295 * 20 19 18 41 41 H 1.08995 * 109.46945 * 59.99615 * 21 19 18 42 42 H 1.09002 * 109.47059 * 180.02562 * 21 19 18 43 43 H 1.09005 * 109.46630 * 299.99859 * 21 19 18 44 44 H 1.09007 * 109.47228 * 49.62288 * 22 19 18 45 45 H 1.08993 * 109.47829 * 169.62398 * 22 19 18 46 46 H 1.09006 * 109.47391 * 289.62939 * 22 19 18 47 47 H 1.08995 * 109.50475 * 62.28901 * 23 5 4 48 48 H 1.09005 * 109.49846 * 182.40327 * 23 5 4 49 49 H 1.09000 * 109.46252 * 179.20020 * 24 23 5 50 50 H 1.09002 * 109.46775 * 299.17117 * 24 23 5 51 51 H 1.00900 * 111.00123 * 305.84389 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7362 -1.2357 6 1 3.9466 0.2865 -1.2679 7 6 4.0857 -1.5086 -2.4520 8 7 5.5517 -1.4277 -2.4986 9 6 6.1107 -2.4877 -3.3483 10 6 7.5645 -2.6907 -3.0072 11 1 8.0467 -2.0422 -2.2907 12 6 8.2791 -3.7042 -3.6099 13 7 9.5479 -3.8810 -3.3126 14 14 7.4449 -4.8262 -4.8488 15 1 7.5876 -4.2522 -6.2110 16 1 8.0802 -6.1678 -4.8078 17 1 6.0039 -4.9503 -4.5124 18 6 5.9916 -0.1019 -2.9533 19 6 5.1656 0.3199 -4.1701 20 6 3.8510 0.9470 -3.7016 21 6 5.9536 1.3418 -4.9921 22 6 4.8661 -0.9071 -5.0335 23 6 4.0546 -1.4191 0.0466 24 6 3.4865 -0.6779 1.2589 25 7 2.0193 -0.6918 1.1993 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3633 -1.0276 0.0005 29 1 1.6893 -0.1981 -2.1400 30 1 1.6656 -1.7446 -1.2576 31 1 3.6687 -1.0751 -3.3609 32 1 3.7817 -2.5525 -2.3747 33 1 5.5646 -3.4156 -3.1781 34 1 6.0200 -2.1997 -4.3955 35 1 10.0505 -4.5942 -3.7364 36 1 5.8520 0.6222 -2.1506 37 1 7.0460 -0.1428 -3.2264 38 1 4.0612 1.8681 -3.1581 39 1 3.2262 1.1699 -4.5665 40 1 3.3290 0.2496 -3.0465 41 1 6.8902 0.8951 -5.3258 42 1 5.3650 1.6427 -5.8587 43 1 6.1670 2.2160 -4.3769 44 1 4.4713 -1.7058 -4.4054 45 1 4.1303 -0.6456 -5.7939 46 1 5.7834 -1.2444 -5.5162 47 1 3.7122 -2.4538 0.0593 48 1 5.1438 -1.3951 0.0829 49 1 3.8176 -1.1701 2.1734 50 1 3.8404 0.3531 1.2530 51 1 1.6197 -0.2925 2.0354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576599726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = 39.812591 kcal Electronic energy + Delta-G solvation = -24884.364269 eV Core-core repulsion = 21820.089652 eV Total energy + Delta-G solvation = -3064.274617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24797 -38.27748 -34.13946 -33.19799 -32.12722 -31.80673 -28.26350 -27.89999 -26.94448 -26.60100 -25.94194 -23.73181 -22.24766 -20.97859 -19.92897 -19.52629 -18.31380 -16.78293 -16.28476 -15.59325 -15.08568 -14.93555 -14.65014 -14.16446 -13.81085 -13.78908 -13.52300 -13.42832 -12.85866 -12.67568 -12.39580 -12.22665 -12.11434 -11.94490 -11.68909 -11.40847 -11.39641 -11.28428 -11.13660 -10.97726 -10.88201 -10.76297 -10.58745 -10.43888 -10.26413 -10.12839 -9.97364 -9.70111 -9.66521 -9.61444 -9.15758 -8.48368 -8.41049 -7.01489 -5.97967 -3.91914 3.30365 3.38932 3.40211 4.17736 4.47207 4.66049 4.89590 5.03500 5.08637 5.16100 5.19127 5.22911 5.33554 5.37625 5.40826 5.53636 5.56969 5.67978 5.72707 5.79372 5.83021 5.86287 5.89147 5.90948 6.01698 6.03857 6.05967 6.10884 6.13274 6.18382 6.21879 6.24379 6.31990 6.39660 6.49458 6.53253 6.67264 6.72483 6.73961 6.80556 6.85056 6.99461 7.10953 7.14262 7.40541 7.74897 8.04582 8.17490 8.77143 9.12593 9.65045 11.15873 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.005444 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.997819 B = 5142.338020 C = 5918.018277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.033 0.967 4 C -0.109 4.109 5 C -0.082 4.082 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.516 5.516 9 C 0.126 3.874 10 C -0.497 4.497 11 H 0.077 0.923 12 C 0.066 3.934 13 N -0.905 5.905 14 Si 0.869 3.131 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.267 1.267 18 C 0.071 3.929 19 C -0.099 4.099 20 C -0.172 4.172 21 C -0.135 4.135 22 C -0.166 4.166 23 C -0.102 4.102 24 C 0.058 3.942 25 N -0.686 5.686 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.025 0.975 51 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 9.974 3.094 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.148 4.148 5 C -0.101 4.101 6 H 0.086 0.914 7 C -0.106 4.106 8 N -0.237 5.237 9 C 0.001 3.999 10 C -0.536 4.536 11 H 0.095 0.905 12 C -0.134 4.134 13 N -0.545 5.545 14 Si 0.697 3.303 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.192 1.192 18 C -0.058 4.058 19 C -0.100 4.100 20 C -0.228 4.228 21 C -0.193 4.193 22 C -0.222 4.222 23 C -0.140 4.140 24 C -0.071 4.071 25 N -0.318 5.318 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.043 0.957 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.979 9.139 3.245 18.692 hybrid contribution -0.372 0.399 -1.250 1.363 sum -16.351 9.538 1.995 19.034 Atomic orbital electron populations 1.21832 0.94823 1.02442 1.01254 1.21431 0.94573 0.95037 0.91350 0.94912 1.21729 0.96023 1.01147 0.95871 1.21225 0.93379 0.99770 0.95719 0.91447 1.22997 0.90692 0.99845 0.97055 1.62084 1.05695 1.02959 1.52994 1.21019 0.96384 0.89584 0.92926 1.21085 0.92691 1.15255 1.24544 0.90478 1.24872 0.94693 0.97202 0.96682 1.69897 1.07952 1.32704 1.43933 0.86951 0.80294 0.80809 0.82222 1.20450 1.21354 1.19175 1.22192 0.99713 0.90808 0.93044 1.21155 0.96076 0.95506 0.97307 1.22753 0.97442 1.01231 1.01404 1.21827 1.00008 0.98444 0.99035 1.22813 1.01349 0.98476 0.99591 1.21514 1.01442 0.99075 0.91922 1.21994 0.86843 0.98543 0.99752 1.60358 1.07913 1.59232 1.04297 0.93122 0.92309 0.91803 0.92034 0.91233 0.91401 0.92108 0.96066 0.95876 0.92888 0.92527 0.89893 0.93372 0.93834 0.89017 0.92334 0.93607 0.93126 0.89941 0.94257 0.91412 0.91839 0.89788 0.91171 0.95721 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.43 37.16 0.35 -0.95 16 2 C 0.09 0.92 3.04 -67.72 -0.21 0.72 16 3 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.11 -1.31 4.48 -26.65 -0.12 -1.43 16 5 C -0.08 -1.14 1.33 -90.50 -0.12 -1.26 16 6 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 7 C 0.02 0.36 2.90 -3.83 -0.01 0.34 16 8 N -0.52 -10.11 4.07 -236.08 -0.96 -11.07 16 9 C 0.13 2.94 2.87 -4.97 -0.01 2.92 16 10 C -0.50 -13.90 9.09 -34.44 -0.31 -14.21 16 11 H 0.08 2.38 8.00 -52.49 -0.42 1.96 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 14 Si 0.87 21.48 27.56 -169.99 -4.69 16.79 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.34 6.41 56.52 0.36 -5.98 16 18 C 0.07 1.28 4.74 -3.82 -0.02 1.26 16 19 C -0.10 -1.51 0.77 -154.51 -0.12 -1.63 16 20 C -0.17 -2.25 7.10 37.16 0.26 -1.99 16 21 C -0.14 -1.92 8.33 37.16 0.31 -1.61 16 22 C -0.17 -2.74 6.23 37.15 0.23 -2.51 16 23 C -0.10 -1.51 5.23 -26.65 -0.14 -1.65 16 24 C 0.06 0.71 6.55 -3.83 -0.03 0.69 16 25 N -0.69 -7.75 6.50 -106.76 -0.69 -8.44 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.68 7.05 -51.93 -0.37 0.31 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.04 2.58 -51.93 -0.13 0.91 16 32 H 0.06 1.06 7.62 -51.93 -0.40 0.66 16 33 H 0.02 0.52 6.34 -51.93 -0.33 0.19 16 34 H 0.02 0.54 3.18 -51.93 -0.16 0.37 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.06 0.96 7.13 -51.93 -0.37 0.59 16 37 H 0.08 1.72 7.03 -51.93 -0.37 1.36 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.09 1.19 1.62 -51.93 -0.08 1.11 16 41 H 0.06 0.90 8.12 -51.93 -0.42 0.47 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.44 3.20 -51.92 -0.17 1.27 16 45 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.07 1.25 6.66 -51.93 -0.35 0.90 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.08 1.43 7.83 -51.93 -0.41 1.03 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.33 3.16 8.79 -39.29 -0.35 2.82 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -29.26 355.43 -9.53 -38.78 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -9.29 Total: 5.12 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -0.03 Total: -19.49 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.88 Total: -46.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.69 Total: 16.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.26 -9.53 -38.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.596 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds