Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45536 * 240.02647 * 2 1 3 5 5 C 1.53120 * 109.27823 * 180.80793 * 4 2 1 6 6 H 1.09002 * 109.57459 * 297.71704 * 5 4 2 7 7 C 1.52998 * 109.52094 * 177.56096 * 5 4 2 8 8 N 1.46899 * 109.47067 * 175.32153 * 7 5 4 9 9 C 1.46900 * 111.00176 * 161.08285 * 8 7 5 10 10 C 1.50703 * 109.46928 * 199.69834 * 9 8 7 11 11 H 1.08000 * 120.00255 * 355.31753 * 10 9 8 12 12 C 1.37880 * 119.99990 * 175.32478 * 10 9 8 13 13 N 1.31512 * 120.00084 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99882 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46953 * 89.99936 * 14 12 10 16 16 H 1.48497 * 109.47104 * 210.00164 * 14 12 10 17 17 H 1.48498 * 109.47013 * 330.00503 * 14 12 10 18 18 C 1.46903 * 110.99908 * 285.03185 * 8 7 5 19 19 C 1.53000 * 109.46833 * 314.57742 * 18 8 7 20 20 C 1.52995 * 109.47443 * 83.97901 * 19 18 8 21 21 C 1.53004 * 109.46956 * 203.97798 * 19 18 8 22 22 C 1.52995 * 109.47452 * 323.97469 * 19 18 8 23 23 C 1.53124 * 109.15741 * 57.65494 * 5 4 2 24 24 C 1.53030 * 109.27877 * 302.34126 * 23 5 4 25 25 N 1.46841 * 109.46150 * 119.97605 * 2 1 3 26 26 H 1.08998 * 109.47186 * 300.02401 * 1 2 3 27 27 H 1.09005 * 109.46953 * 60.02386 * 1 2 3 28 28 H 1.08995 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.50321 * 60.86680 * 4 2 1 30 30 H 1.09000 * 109.50036 * 300.75348 * 4 2 1 31 31 H 1.08997 * 109.47740 * 55.31436 * 7 5 4 32 32 H 1.09004 * 109.46878 * 295.31371 * 7 5 4 33 33 H 1.08998 * 109.46744 * 319.69329 * 9 8 7 34 34 H 1.08990 * 109.47326 * 79.69590 * 9 8 7 35 35 H 0.97000 * 119.99690 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47126 * 74.57269 * 18 8 7 37 37 H 1.08991 * 109.47365 * 194.57650 * 18 8 7 38 38 H 1.09003 * 109.47131 * 64.77129 * 20 19 18 39 39 H 1.08998 * 109.47360 * 184.77725 * 20 19 18 40 40 H 1.09003 * 109.46901 * 304.77295 * 20 19 18 41 41 H 1.08995 * 109.46945 * 59.99615 * 21 19 18 42 42 H 1.09002 * 109.47059 * 180.02562 * 21 19 18 43 43 H 1.09005 * 109.46630 * 299.99859 * 21 19 18 44 44 H 1.09007 * 109.47228 * 49.62288 * 22 19 18 45 45 H 1.08993 * 109.47829 * 169.62398 * 22 19 18 46 46 H 1.09006 * 109.47391 * 289.62939 * 22 19 18 47 47 H 1.08995 * 109.50475 * 62.28901 * 23 5 4 48 48 H 1.09005 * 109.49846 * 182.40327 * 23 5 4 49 49 H 1.09000 * 109.46252 * 179.20020 * 24 23 5 50 50 H 1.09002 * 109.46775 * 299.17117 * 24 23 5 51 51 H 1.00900 * 111.00123 * 305.84389 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7362 -1.2357 6 1 3.9466 0.2865 -1.2679 7 6 4.0857 -1.5086 -2.4520 8 7 5.5517 -1.4277 -2.4986 9 6 6.1107 -2.4877 -3.3483 10 6 7.5645 -2.6907 -3.0072 11 1 8.0467 -2.0422 -2.2907 12 6 8.2791 -3.7042 -3.6099 13 7 9.5479 -3.8810 -3.3126 14 14 7.4449 -4.8262 -4.8488 15 1 7.5876 -4.2522 -6.2110 16 1 8.0802 -6.1678 -4.8078 17 1 6.0039 -4.9503 -4.5124 18 6 5.9916 -0.1019 -2.9533 19 6 5.1656 0.3199 -4.1701 20 6 3.8510 0.9470 -3.7016 21 6 5.9536 1.3418 -4.9921 22 6 4.8661 -0.9071 -5.0335 23 6 4.0546 -1.4191 0.0466 24 6 3.4865 -0.6779 1.2589 25 7 2.0193 -0.6918 1.1993 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3633 -1.0276 0.0005 29 1 1.6893 -0.1981 -2.1400 30 1 1.6656 -1.7446 -1.2576 31 1 3.6687 -1.0751 -3.3609 32 1 3.7817 -2.5525 -2.3747 33 1 5.5646 -3.4156 -3.1781 34 1 6.0200 -2.1997 -4.3955 35 1 10.0505 -4.5942 -3.7364 36 1 5.8520 0.6222 -2.1506 37 1 7.0460 -0.1428 -3.2264 38 1 4.0612 1.8681 -3.1581 39 1 3.2262 1.1699 -4.5665 40 1 3.3290 0.2496 -3.0465 41 1 6.8902 0.8951 -5.3258 42 1 5.3650 1.6427 -5.8587 43 1 6.1670 2.2160 -4.3769 44 1 4.4713 -1.7058 -4.4054 45 1 4.1303 -0.6456 -5.7939 46 1 5.7834 -1.2444 -5.5162 47 1 3.7122 -2.4538 0.0593 48 1 5.1438 -1.3951 0.0829 49 1 3.8176 -1.1701 2.1734 50 1 3.8404 0.3531 1.2530 51 1 1.6197 -0.2925 2.0354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576599726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = 20.458707 kcal Electronic energy + Delta-G solvation = -24885.203517 eV Core-core repulsion = 21820.089652 eV Total energy + Delta-G solvation = -3065.113864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57917 -39.33838 -35.57721 -34.81331 -33.56234 -33.03221 -29.94906 -29.16405 -28.27167 -27.62160 -27.17113 -25.26979 -23.37252 -22.46223 -21.27814 -20.59941 -19.59275 -18.91120 -17.25173 -16.91662 -16.62998 -16.33203 -15.88849 -15.47355 -15.30272 -15.04740 -14.78906 -14.52157 -14.34600 -14.13587 -13.88414 -13.23924 -13.13854 -13.07734 -12.91336 -12.73122 -12.67233 -12.58782 -12.52185 -12.28054 -12.24406 -12.07539 -11.86124 -11.84168 -11.72878 -11.52824 -11.41112 -11.29543 -11.14216 -10.96871 -10.84299 -10.67430 -9.30599 -8.55983 -8.23446 -6.22110 1.32528 1.35396 1.45243 2.36340 3.09915 3.31179 3.33301 3.86614 3.90276 3.96513 3.99720 4.01571 4.14007 4.28032 4.46186 4.49745 4.55590 4.56700 4.57217 4.68110 4.72080 4.77634 4.82931 4.84844 4.88363 4.92936 4.94840 4.95969 5.01160 5.04911 5.08631 5.11064 5.15104 5.19727 5.25329 5.27467 5.38337 5.41324 5.44585 5.47094 5.50851 5.61064 5.63307 5.67681 6.11412 6.19735 6.56934 6.60964 6.79938 6.83789 7.39110 8.94151 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.005444 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.997819 B = 5142.338020 C = 5918.018277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.036 0.964 4 C -0.104 4.104 5 C -0.073 4.073 6 H 0.068 0.932 7 C 0.025 3.975 8 N -0.532 5.532 9 C 0.138 3.862 10 C -0.500 4.500 11 H 0.030 0.970 12 C 0.005 3.995 13 N -0.955 5.955 14 Si 0.940 3.060 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.249 1.249 18 C 0.075 3.925 19 C -0.095 4.095 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.167 4.167 23 C -0.100 4.100 24 C 0.065 3.935 25 N -0.691 5.691 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.013 0.987 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.042 0.958 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.073 0.927 50 H 0.028 0.972 51 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.915 11.246 2.107 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.142 4.142 5 C -0.091 4.091 6 H 0.087 0.913 7 C -0.101 4.101 8 N -0.255 5.255 9 C 0.012 3.988 10 C -0.539 4.539 11 H 0.048 0.952 12 C -0.191 4.191 13 N -0.597 5.597 14 Si 0.764 3.236 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.173 1.173 18 C -0.053 4.053 19 C -0.097 4.097 20 C -0.222 4.222 21 C -0.190 4.190 22 C -0.223 4.223 23 C -0.139 4.139 24 C -0.064 4.064 25 N -0.324 5.324 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.046 0.954 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.622 10.436 2.273 22.341 hybrid contribution 0.821 0.063 -0.851 1.184 sum -18.801 10.499 1.421 21.581 Atomic orbital electron populations 1.21784 0.93032 1.02433 1.02532 1.21476 0.95933 0.94737 0.90293 0.94567 1.21697 0.93789 1.01214 0.97547 1.21141 0.95155 0.98985 0.93868 0.91323 1.23072 0.88282 0.99696 0.99098 1.61946 1.08109 1.02809 1.52606 1.20800 0.93249 0.90593 0.94161 1.21360 0.95234 1.14216 1.23089 0.95213 1.25782 0.95235 0.99071 0.99041 1.70066 1.09867 1.33878 1.45854 0.85825 0.79896 0.78253 0.79673 1.19038 1.21168 1.17307 1.22100 0.98018 0.90288 0.94932 1.21103 0.97165 0.95629 0.95816 1.22660 0.95832 1.01376 1.02290 1.21795 0.99156 0.98278 0.99811 1.22751 1.00806 0.98608 1.00167 1.21423 0.99558 0.98791 0.94083 1.21838 0.87830 0.98258 0.98499 1.60312 1.06894 1.59873 1.05370 0.91905 0.91047 0.92429 0.90208 0.92093 0.89516 0.93507 0.96870 0.94503 0.92797 0.91475 0.93887 0.92280 0.91826 0.89085 0.94515 0.91497 0.92001 0.90987 0.91394 0.93940 0.93488 0.92975 0.90817 0.95356 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.43 71.98 0.68 -1.32 16 2 C 0.09 1.58 3.04 44.94 0.14 1.72 16 3 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.10 -2.22 4.48 30.65 0.14 -2.08 16 5 C -0.07 -1.94 1.33 -10.71 -0.01 -1.95 16 6 H 0.07 1.84 5.94 -2.39 -0.01 1.83 16 7 C 0.03 0.81 2.90 86.30 0.25 1.06 16 8 N -0.53 -21.38 4.07 -900.81 -3.67 -25.05 16 9 C 0.14 6.58 2.87 85.56 0.25 6.82 16 10 C -0.50 -29.43 9.09 25.60 0.23 -29.20 16 11 H 0.03 1.97 8.00 -2.91 -0.02 1.95 16 12 C 0.00 0.28 5.47 84.66 0.46 0.74 16 13 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 14 Si 0.94 44.97 27.56 68.60 1.89 46.86 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 17 H -0.25 -11.13 6.41 99.48 0.64 -10.49 16 18 C 0.08 2.75 4.74 86.30 0.41 3.16 16 19 C -0.10 -2.76 0.77 -52.18 -0.04 -2.80 16 20 C -0.17 -3.70 7.10 71.98 0.51 -3.19 16 21 C -0.13 -3.54 8.33 71.98 0.60 -2.94 16 22 C -0.17 -5.20 6.23 71.98 0.45 -4.75 16 23 C -0.10 -3.01 5.23 30.65 0.16 -2.85 16 24 C 0.07 1.55 6.55 86.32 0.57 2.11 16 25 N -0.69 -14.13 6.50 -491.68 -3.20 -17.33 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.43 7.05 -2.39 -0.02 1.42 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.46 2.58 -2.39 -0.01 2.46 16 32 H 0.05 1.62 7.62 -2.38 -0.02 1.60 16 33 H 0.01 0.65 6.34 -2.39 -0.02 0.63 16 34 H 0.04 1.70 3.18 -2.39 -0.01 1.69 16 35 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.07 2.27 7.13 -2.39 -0.02 2.26 16 37 H 0.04 1.89 7.03 -2.39 -0.02 1.88 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 40 H 0.09 2.04 1.62 -2.39 0.00 2.04 16 41 H 0.04 1.12 8.12 -2.39 -0.02 1.10 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 44 H 0.07 2.39 3.20 -2.38 -0.01 2.38 16 45 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 46 H 0.04 1.53 6.66 -2.38 -0.02 1.52 16 47 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.05 1.87 7.83 -2.38 -0.02 1.85 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.35 5.67 8.79 -89.69 -0.79 4.88 16 Total: -1.00 -66.85 355.43 0.15 -66.70 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.04 Total: 25.23 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.78 Total: -35.48 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -6.56 Total: -103.31 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.89 Total: 46.86 kcal Total: -66.85 0.15 -66.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576599726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.163 kcal (2) G-P(sol) polarization free energy of solvation -66.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds