Wall clock time and date at job start Tue Mar 31 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47208 * 2 1 4 4 C 1.46500 * 120.00075 * 269.99793 * 3 2 1 5 5 C 1.50696 * 109.46967 * 269.99937 * 4 3 2 6 6 H 1.08000 * 120.00395 * 0.02562 * 5 4 3 7 7 C 1.37888 * 119.99673 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99847 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99927 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47469 * 89.99855 * 9 7 5 11 11 H 1.48503 * 109.47278 * 209.99747 * 9 7 5 12 12 H 1.48500 * 109.47023 * 329.99939 * 9 7 5 13 13 C 1.34782 * 120.00096 * 90.00350 * 3 2 1 14 14 O 1.21272 * 120.00071 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99867 * 359.97438 * 13 3 2 16 16 H 1.08999 * 109.47486 * 320.00681 * 15 13 3 17 17 N 1.46896 * 109.47352 * 200.00703 * 15 13 3 18 18 C 1.52999 * 109.46892 * 80.00191 * 15 13 3 19 19 C 1.54245 * 109.63036 * 184.99869 * 18 15 13 20 20 C 1.45532 * 112.40824 * 160.11168 * 19 18 15 21 21 C 1.54241 * 112.40753 * 61.93924 * 20 19 18 22 22 C 1.50474 * 108.68067 * 279.91350 * 21 20 19 23 23 C 1.54268 * 112.38918 * 93.93390 * 22 21 20 24 24 C 1.50471 * 109.78547 * 65.87496 * 18 15 13 25 25 H 1.08996 * 109.47300 * 299.99869 * 1 2 3 26 26 H 1.09003 * 109.47241 * 60.00233 * 1 2 3 27 27 H 1.09008 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47082 * 239.99900 * 2 1 3 29 29 H 1.09002 * 109.47197 * 120.00318 * 2 1 3 30 30 H 1.08993 * 109.47077 * 30.00014 * 4 3 2 31 31 H 1.08997 * 109.46904 * 149.99915 * 4 3 2 32 32 H 0.96996 * 119.99737 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99717 * 299.99925 * 17 15 13 34 34 H 1.00894 * 111.00471 * 63.95106 * 17 15 13 35 35 H 1.08992 * 109.62856 * 305.38420 * 18 15 13 36 36 H 1.09002 * 108.89218 * 39.35447 * 19 18 15 37 37 H 1.09000 * 108.89510 * 280.87350 * 19 18 15 38 38 H 1.09005 * 108.89581 * 301.18197 * 20 19 18 39 39 H 1.09000 * 108.81888 * 182.63775 * 20 19 18 40 40 H 1.09002 * 109.62887 * 39.72076 * 21 20 19 41 41 H 1.09005 * 109.63035 * 160.10789 * 21 20 19 42 42 H 1.08996 * 108.87961 * 215.02971 * 22 21 20 43 43 H 1.08995 * 108.87705 * 333.46943 * 22 21 20 44 44 H 1.09001 * 108.83427 * 197.61629 * 23 22 21 45 45 H 1.08996 * 108.65089 * 79.41336 * 23 22 21 46 46 H 1.08996 * 108.87764 * 334.72557 * 24 18 15 47 47 H 1.08998 * 108.88359 * 93.17486 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7036 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9131 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2625 -4.2008 12 1 6.7734 1.9158 -2.2205 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1600 1.1672 15 6 1.9914 1.3063 2.4723 16 1 1.0806 0.7127 2.3933 17 7 1.8389 2.2960 3.5470 18 6 3.1730 0.3874 2.7889 19 6 2.8650 -0.4344 4.0574 20 6 3.6954 -1.6250 4.1622 21 6 5.1970 -1.2875 4.2640 22 6 5.7191 -0.9921 2.8840 23 6 5.6912 0.5149 2.5553 24 6 4.4061 1.2120 3.0415 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0283 31 1 2.0956 3.1409 -1.1384 32 1 3.6749 3.5153 -4.4444 33 1 2.6708 2.8594 3.6404 34 1 1.0263 2.8740 3.3938 35 1 3.3483 -0.2860 1.9500 36 1 1.8175 -0.7352 4.0373 37 1 3.0336 0.1919 4.9334 38 1 3.5323 -2.2477 3.2825 39 1 3.3983 -2.1838 5.0497 40 1 5.3336 -0.4143 4.9019 41 1 5.7354 -2.1365 4.6852 42 1 6.7438 -1.3560 2.8093 43 1 5.1054 -1.5200 2.1542 44 1 5.7728 0.6412 1.4757 45 1 6.5499 0.9909 3.0287 46 1 4.3048 2.1656 2.5235 47 1 4.4908 1.4014 4.1115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:23 Heat of formation + Delta-G solvation = -64.586243 kcal Electronic energy + Delta-G solvation = -24513.188558 eV Core-core repulsion = 21308.553773 eV Total energy + Delta-G solvation = -3204.634785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13157 -38.21319 -35.45733 -34.50274 -32.73608 -32.28535 -30.78831 -30.09431 -27.73232 -25.91859 -24.50008 -23.70439 -23.03192 -21.79780 -20.24625 -19.02149 -18.21864 -16.59257 -16.48308 -16.12959 -15.62317 -15.10540 -14.52846 -14.47604 -14.25267 -14.19958 -13.43846 -13.41735 -13.18501 -13.03404 -12.80584 -12.41484 -12.08785 -12.00362 -11.88245 -11.67025 -11.50052 -11.17331 -10.92810 -10.78387 -10.66298 -10.58257 -10.51088 -10.39235 -10.22175 -10.15334 -10.03006 -9.96607 -9.64142 -9.48763 -8.44771 -8.24560 -7.66263 -6.05242 -4.09605 3.28192 3.33279 3.35820 3.41073 3.97291 4.43261 4.62967 4.73614 4.86350 4.95214 5.11756 5.19508 5.23380 5.29365 5.34656 5.39609 5.43142 5.50485 5.56346 5.62669 5.74549 5.75394 5.80369 5.93596 6.05734 6.13627 6.15074 6.22138 6.22817 6.26915 6.30211 6.37595 6.44350 6.50426 6.55286 6.58891 6.67287 7.03776 7.24809 7.43526 7.54379 7.60727 7.91347 8.23238 8.42985 8.89059 9.07159 9.55360 11.02914 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.006377 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.608245 B = 4389.910151 C = 5263.975731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.245 3.755 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.476 3.524 14 O -0.548 6.548 15 C 0.074 3.926 16 H 0.095 0.905 17 N -0.820 5.820 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.118 4.118 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.348 0.652 34 H 0.339 0.661 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -10.051 14.255 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.323 5.323 4 C 0.125 3.875 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.261 3.739 14 O -0.427 6.427 15 C -0.041 4.041 16 H 0.113 0.887 17 N -0.349 5.349 18 C -0.087 4.087 19 C -0.137 4.137 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.819 -9.965 14.550 17.729 hybrid contribution 1.053 0.571 -1.410 1.850 sum -0.765 -9.395 13.141 16.172 Atomic orbital electron populations 1.22230 0.96839 1.01470 1.02235 1.21520 0.93510 0.84419 1.02873 1.48294 1.63033 1.13070 1.07888 1.19256 0.96269 0.93542 0.78431 1.21409 0.96857 1.31705 1.06125 0.92494 1.24932 0.97753 0.94978 0.96446 1.69932 1.35644 1.33550 1.14312 0.86536 0.84827 0.77688 0.78630 1.20649 1.21108 1.19873 1.21610 0.78394 0.87457 0.86459 1.90648 1.46311 1.18441 1.87301 1.21726 0.99974 0.94584 0.87847 0.88748 1.59224 1.09543 1.22245 1.43912 1.20859 0.93235 0.96109 0.98468 1.20363 0.99165 0.96348 0.97807 1.20522 0.95246 0.98244 1.01478 1.21333 0.95580 1.01005 0.97440 1.21370 1.00638 0.96614 0.96982 1.21910 0.97336 0.94617 1.01589 1.21388 0.93370 0.99570 1.01238 0.93100 0.92090 0.92098 0.90034 0.91265 0.95213 0.94137 0.92765 0.83809 0.84940 0.90162 0.92444 0.91513 0.92380 0.92636 0.91675 0.92573 0.92746 0.92161 0.91871 0.92708 0.91033 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.10 37.16 0.38 -1.91 16 2 C 0.10 1.62 5.68 -4.05 -0.02 1.59 16 3 N -0.59 -12.26 2.46 -175.07 -0.43 -12.69 16 4 C 0.24 6.37 5.16 -5.20 -0.03 6.35 16 5 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.48 9.56 6.14 -10.98 -0.07 9.50 16 14 O -0.55 -13.32 14.91 5.56 0.08 -13.24 16 15 C 0.07 1.11 2.00 -68.87 -0.14 0.97 16 16 H 0.09 1.28 6.01 -51.93 -0.31 0.97 16 17 N -0.82 -11.34 8.64 -5.66 -0.05 -11.39 16 18 C -0.07 -0.92 1.33 -91.23 -0.12 -1.04 16 19 C -0.10 -1.11 4.44 -29.60 -0.13 -1.24 16 20 C -0.12 -1.18 5.26 -29.60 -0.16 -1.34 16 21 C -0.12 -1.20 5.59 -27.34 -0.15 -1.35 16 22 C -0.12 -1.42 5.34 -27.33 -0.15 -1.57 16 23 C -0.12 -1.67 5.85 -25.51 -0.15 -1.82 16 24 C -0.12 -1.73 3.72 -27.43 -0.10 -1.83 16 25 H 0.05 0.65 7.15 -51.93 -0.37 0.28 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.07 0.95 4.84 -51.93 -0.25 0.70 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.35 5.15 7.04 -39.29 -0.28 4.87 16 34 H 0.34 4.55 9.06 -39.30 -0.36 4.19 16 35 H 0.08 1.17 5.30 -51.93 -0.27 0.89 16 36 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 37 H 0.07 0.77 7.47 -51.93 -0.39 0.38 16 38 H 0.06 0.59 7.48 -51.93 -0.39 0.20 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.69 6.98 -51.93 -0.36 0.33 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.75 6.65 -51.93 -0.35 0.40 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.29 5.61 -51.93 -0.29 1.00 16 47 H 0.06 0.81 6.63 -51.93 -0.34 0.47 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -31.17 350.41 -8.76 -39.93 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.10 Total: 8.24 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.26 Total: -7.08 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.26 Total: -50.03 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.17 -8.76 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.656 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds