Wall clock time and date at job start Tue Mar 31 2020 05:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46733 * 2 1 4 4 C 1.46499 * 120.00075 * 265.45052 * 3 2 1 5 5 C 1.50694 * 109.47683 * 270.00460 * 4 3 2 6 6 H 1.08001 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00560 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99549 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46956 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47163 * 120.00171 * 9 7 5 12 12 H 1.48500 * 109.47448 * 240.00514 * 9 7 5 13 13 C 1.34782 * 119.99996 * 85.46045 * 3 2 1 14 14 O 1.21280 * 119.99980 * 4.91705 * 13 3 2 15 15 C 1.50697 * 119.99995 * 184.91420 * 13 3 2 16 16 H 1.09000 * 109.47045 * 33.54250 * 15 13 3 17 17 N 1.46898 * 109.47108 * 153.54444 * 15 13 3 18 18 C 1.52992 * 109.47249 * 273.54591 * 15 13 3 19 19 C 1.50479 * 108.87739 * 179.30771 * 18 15 13 20 20 C 1.54238 * 108.52258 * 214.92610 * 19 18 15 21 21 C 1.45542 * 112.40988 * 280.01173 * 20 19 18 22 22 C 1.54245 * 112.40375 * 61.93666 * 21 20 19 23 23 C 1.50476 * 108.52178 * 280.01411 * 22 21 20 24 24 C 1.54068 * 112.49746 * 94.15065 * 23 22 21 25 25 H 1.08997 * 109.46981 * 184.89361 * 1 2 3 26 26 H 1.08997 * 109.47473 * 304.89534 * 1 2 3 27 27 H 1.09003 * 109.47240 * 64.89976 * 1 2 3 28 28 H 1.08995 * 109.46749 * 239.99989 * 2 1 3 29 29 H 1.09000 * 109.46885 * 120.00264 * 2 1 3 30 30 H 1.09002 * 109.47147 * 30.01305 * 4 3 2 31 31 H 1.09007 * 109.46724 * 150.00591 * 4 3 2 32 32 H 0.97001 * 119.99993 * 179.97438 * 8 7 5 33 33 H 1.00899 * 111.00187 * 59.99604 * 17 15 13 34 34 H 1.00896 * 111.00168 * 183.95603 * 17 15 13 35 35 H 1.08999 * 108.77290 * 60.79860 * 18 15 13 36 36 H 1.09005 * 109.62852 * 95.21758 * 19 18 15 37 37 H 1.08996 * 109.63123 * 334.64082 * 19 18 15 38 38 H 1.09001 * 108.89453 * 40.76465 * 20 19 18 39 39 H 1.08998 * 108.89483 * 159.25679 * 20 19 18 40 40 H 1.09000 * 108.89421 * 182.68686 * 21 20 19 41 41 H 1.08998 * 108.89199 * 301.28159 * 21 20 19 42 42 H 1.08995 * 109.63091 * 39.71998 * 22 21 20 43 43 H 1.08991 * 109.62835 * 160.11112 * 22 21 20 44 44 H 1.08996 * 108.87673 * 214.92811 * 23 22 21 45 45 H 1.09004 * 108.87859 * 333.37299 * 23 22 21 46 46 H 1.09000 * 108.81203 * 79.14328 * 24 23 22 47 47 H 1.09003 * 108.81702 * 197.42257 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3573 2.0383 -1.2647 5 6 3.8088 1.7916 -1.5858 6 1 4.4178 1.2037 -0.9151 7 6 4.3591 2.3154 -2.7364 8 7 3.6173 3.0309 -3.5534 9 14 6.1582 2.0090 -3.1348 10 1 6.7681 1.1803 -2.0640 11 1 6.2631 1.2952 -4.4328 12 1 6.8735 3.3073 -3.2246 13 6 2.1558 2.0474 1.1636 14 8 1.9612 1.4765 2.2158 15 6 2.5514 3.5015 1.1571 16 1 2.1281 3.9893 0.2791 17 7 2.0430 4.1526 2.3718 18 6 4.0766 3.6149 1.1178 19 6 4.4560 5.0709 1.0946 20 6 5.7186 5.2343 0.2238 21 6 6.9357 4.8815 0.9396 22 6 6.9493 3.4044 1.3836 23 6 6.1204 3.2731 2.6326 24 6 4.6632 2.8722 2.3335 25 1 -0.3633 -1.0239 0.0877 26 1 -0.3634 0.5879 0.8428 27 1 -0.3634 0.4359 -0.9306 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7347 1.6337 -2.0627 31 1 2.1821 3.1105 -1.1754 32 1 4.0045 3.3998 -4.3627 33 1 2.4211 3.7181 3.2003 34 1 2.2394 5.1422 2.3608 35 1 4.4402 3.1412 0.2060 36 1 4.6643 5.4112 2.1090 37 1 3.6400 5.6553 0.6697 38 1 5.6272 4.5946 -0.6539 39 1 5.7897 6.2716 -0.1035 40 1 7.7922 5.0627 0.2902 41 1 7.0222 5.5148 1.8224 42 1 6.5258 2.7813 0.5960 43 1 7.9738 3.0924 1.5862 44 1 6.5694 2.5164 3.2759 45 1 6.1226 4.2274 3.1593 46 1 4.6259 1.7998 2.1418 47 1 4.0514 3.0920 3.2085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:25 Heat of formation + Delta-G solvation = -62.777858 kcal Electronic energy + Delta-G solvation = -25015.726290 eV Core-core repulsion = 21811.169923 eV Total energy + Delta-G solvation = -3204.556367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90504 -38.14305 -35.28429 -34.57434 -32.76745 -31.97493 -30.48503 -30.28719 -27.05718 -26.09921 -24.65293 -23.42110 -22.99293 -21.64467 -20.18757 -18.85821 -17.83058 -16.71794 -16.45436 -15.64818 -15.51701 -14.89853 -14.54266 -14.37876 -14.17932 -13.72737 -13.64027 -13.35026 -13.02299 -12.68429 -12.60439 -12.32639 -12.15282 -11.87187 -11.65884 -11.58327 -11.47036 -11.23183 -10.96462 -10.82354 -10.58694 -10.45462 -10.31614 -10.26769 -10.06849 -10.00703 -9.93048 -9.77531 -9.68343 -8.90644 -8.56857 -8.16239 -7.64921 -6.21691 -4.27523 3.16346 3.26538 3.29491 3.51091 3.96007 4.29542 4.93400 4.96079 5.09328 5.13584 5.17699 5.33268 5.45208 5.51125 5.57435 5.66069 5.70529 5.74682 5.83997 5.89305 5.94128 6.01685 6.04226 6.17500 6.27615 6.30212 6.37019 6.43820 6.45869 6.50062 6.52324 6.54781 6.63128 6.69193 6.74676 6.82717 6.85164 7.06977 7.18034 7.50020 7.62308 7.74273 7.86257 8.04115 8.41080 8.78618 9.12204 9.39040 10.84502 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.010002 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.841392 B = 2798.664782 C = 4370.940297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.597 5.597 4 C 0.235 3.765 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.529 3.471 14 O -0.569 6.569 15 C 0.082 3.918 16 H 0.103 0.897 17 N -0.833 5.833 18 C -0.127 4.127 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.108 4.108 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.344 0.656 34 H 0.338 0.662 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 2.883 7.097 8.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.328 5.328 4 C 0.115 3.885 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.710 3.290 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.317 3.683 14 O -0.450 6.450 15 C -0.032 4.032 16 H 0.120 0.880 17 N -0.365 5.365 18 C -0.147 4.147 19 C -0.140 4.140 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.146 4.146 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.690 2.434 7.200 7.786 hybrid contribution 2.024 0.118 -0.408 2.068 sum 3.713 2.551 6.792 8.151 Atomic orbital electron populations 1.22111 0.96989 1.01112 1.01894 1.21186 0.93259 0.84029 1.02208 1.48199 1.63169 1.13194 1.08238 1.19463 0.95956 0.93416 0.79622 1.21466 0.95257 1.33478 1.06726 0.92016 1.24880 0.97796 0.94849 0.95855 1.69928 1.35886 1.34145 1.12525 0.86662 0.85273 0.78381 0.78645 1.19439 1.20903 1.20592 1.20231 0.76205 0.88516 0.83353 1.90551 1.53072 1.69868 1.31484 1.21484 0.94120 0.93037 0.94579 0.87963 1.58741 1.66646 1.06834 1.04280 1.21821 0.94502 0.96372 1.02054 1.21294 0.97533 0.96064 0.99159 1.20468 0.94463 1.01260 0.99691 1.20443 0.98120 0.96346 0.99893 1.21382 0.99125 0.96908 0.98624 1.21272 0.95427 1.00685 0.97417 1.21901 0.94771 1.00354 0.97529 0.92588 0.92724 0.92753 0.90553 0.91479 0.94810 0.94326 0.92587 0.84055 0.84875 0.86222 0.92689 0.92004 0.90785 0.92923 0.92937 0.92889 0.90779 0.92681 0.93000 0.92694 0.92270 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.21 37.16 0.38 -2.31 16 2 C 0.12 2.20 6.12 -4.04 -0.02 2.18 16 3 N -0.60 -12.55 2.46 -175.06 -0.43 -12.98 16 4 C 0.24 5.42 4.93 -5.20 -0.03 5.39 16 5 C -0.53 -12.99 7.08 -34.44 -0.24 -13.23 16 6 H 0.06 1.56 7.76 -52.49 -0.41 1.16 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -23.37 13.29 55.43 0.74 -22.63 16 9 Si 0.88 19.75 29.54 -169.99 -5.02 14.73 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.53 11.06 5.90 -10.98 -0.06 11.00 16 14 O -0.57 -12.86 15.57 5.56 0.09 -12.78 16 15 C 0.08 1.50 2.07 -68.87 -0.14 1.36 16 16 H 0.10 1.99 6.05 -51.93 -0.31 1.68 16 17 N -0.83 -13.38 8.95 -5.66 -0.05 -13.43 16 18 C -0.13 -2.18 1.54 -91.33 -0.14 -2.32 16 19 C -0.10 -1.52 4.19 -27.34 -0.11 -1.64 16 20 C -0.12 -1.85 5.26 -29.60 -0.16 -2.01 16 21 C -0.11 -1.53 5.27 -29.60 -0.16 -1.69 16 22 C -0.12 -1.82 5.61 -27.34 -0.15 -1.97 16 23 C -0.11 -1.56 5.31 -27.43 -0.15 -1.71 16 24 C -0.11 -1.76 4.35 -25.62 -0.11 -1.88 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 29 H 0.07 1.28 7.50 -51.93 -0.39 0.89 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 0.92 5.79 -51.92 -0.30 0.62 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.34 5.55 6.43 -39.29 -0.25 5.29 16 34 H 0.34 4.58 7.97 -39.29 -0.31 4.27 16 35 H 0.12 2.44 3.93 -51.93 -0.20 2.24 16 36 H 0.05 0.73 6.98 -51.93 -0.36 0.36 16 37 H 0.06 0.90 7.45 -51.93 -0.39 0.52 16 38 H 0.07 1.36 7.47 -51.93 -0.39 0.97 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 42 H 0.07 1.29 6.98 -51.93 -0.36 0.93 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.71 6.63 -51.93 -0.34 0.36 16 46 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 47 H 0.05 0.86 5.93 -51.93 -0.31 0.55 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -26.64 347.83 -8.69 -35.33 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -8.05 Total: 13.69 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.20 Total: -7.18 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.25 Total: -49.04 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.64 -8.69 -35.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.451 kcal (2) G-P(sol) polarization free energy of solvation -26.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds