Wall clock time and date at job start Tue Mar 31 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86810 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47088 * 300.00054 * 3 2 1 6 6 H 1.48495 * 109.46768 * 60.00076 * 3 2 1 7 7 C 1.38756 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00128 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99395 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99566 * 180.02562 * 9 7 2 11 11 O 1.21205 * 120.00079 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99744 * 179.97438 * 10 9 7 13 13 S 1.81405 * 109.46997 * 179.97438 * 12 10 9 14 14 C 1.76195 * 102.99835 * 179.97438 * 13 12 10 15 15 C 1.38978 * 120.07911 * 179.97438 * 14 13 12 16 16 C 1.38087 * 119.91880 * 180.02562 * 15 14 13 17 17 C 1.38300 * 120.07979 * 0.02681 * 16 15 14 18 18 N 1.48007 * 119.91969 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99745 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00052 * 179.72348 * 18 17 16 21 21 C 1.38307 * 120.16166 * 0.22510 * 17 16 15 22 22 C 1.38084 * 120.07949 * 359.49978 * 21 17 16 23 23 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47246 * 59.99619 * 12 10 9 25 25 H 1.09004 * 109.46839 * 299.99623 * 12 10 9 26 26 H 1.07998 * 120.04022 * 0.02562 * 15 14 13 27 27 H 1.07995 * 119.95791 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.95583 * 179.72607 * 21 17 16 29 29 H 1.07999 * 120.04149 * 180.23208 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0016 10 6 2.0651 -3.4965 -0.0015 11 8 3.2755 -3.4330 -0.0010 12 6 1.3810 -4.8393 -0.0021 13 16 2.6304 -6.1545 -0.0026 14 6 1.6586 -7.6242 -0.0024 15 6 2.2776 -8.8685 -0.0033 16 6 1.5128 -10.0182 -0.0037 17 6 0.1324 -9.9325 -0.0038 18 7 -0.6839 -11.1672 -0.0048 19 8 -0.1398 -12.2569 -0.0060 20 8 -1.8996 -11.0934 0.0002 21 6 -0.4870 -8.6960 -0.0082 22 6 0.2713 -7.5420 -0.0021 23 1 -0.4850 0.8400 -0.0004 24 1 0.7585 -4.9295 -0.8922 25 1 0.7579 -4.9299 0.8877 26 1 3.3554 -8.9362 -0.0036 27 1 1.9931 -10.9855 -0.0039 28 1 -1.5652 -8.6329 -0.0127 29 1 -0.2131 -6.5767 -0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004219466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:24 Heat of formation + Delta-G solvation = -53.281569 kcal Electronic energy + Delta-G solvation = -18229.550998 eV Core-core repulsion = 14827.108251 eV Total energy + Delta-G solvation = -3402.442747 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28476 -39.49778 -39.24275 -36.68627 -35.52261 -32.49271 -32.33879 -31.87897 -30.05874 -26.83664 -25.43503 -23.46759 -22.75839 -20.77281 -19.55968 -18.77693 -18.15076 -18.01374 -17.64890 -16.82645 -15.78697 -15.51294 -15.28055 -15.02413 -14.64899 -14.41652 -14.09518 -13.84482 -13.03799 -12.75106 -12.61149 -11.96911 -11.76414 -11.69491 -11.35321 -11.32961 -11.27587 -10.67037 -10.57398 -10.53492 -10.49158 -10.03775 -9.76935 -9.44400 -8.79326 -7.81693 -6.62474 -4.31556 -0.41820 0.63978 0.93964 1.08481 1.30478 2.04435 2.89643 2.90237 3.07838 3.15299 3.21092 3.70141 4.05475 4.18337 4.21639 4.53903 4.59640 4.85006 4.87385 5.09297 5.21658 5.27200 5.30859 5.44050 5.55927 5.89495 6.26369 6.29710 7.18603 7.51006 7.70042 8.38818 8.85411 9.52512 10.54599 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.002963 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.592297 B = 9449.200093 C =10076.646530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.045 3.955 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.385 4.385 8 H 0.100 0.900 9 O -0.202 6.202 10 C 0.408 3.592 11 O -0.539 6.539 12 C -0.120 4.120 13 S 0.019 5.981 14 C -0.052 4.052 15 C -0.106 4.106 16 C -0.032 4.032 17 C -0.067 4.067 18 N 0.035 4.965 19 O -0.169 6.169 20 O -0.168 6.168 21 C -0.027 4.027 22 C -0.143 4.143 23 H 0.272 0.728 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.155 0.845 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -14.995 -0.016 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.160 4.160 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.118 0.882 9 O -0.108 6.108 10 C 0.252 3.748 11 O -0.436 6.436 12 C -0.269 4.269 13 S 0.270 5.730 14 C -0.168 4.168 15 C -0.132 4.132 16 C -0.054 4.054 17 C -0.154 4.154 18 N 0.552 4.448 19 O -0.384 6.384 20 O -0.383 6.383 21 C -0.048 4.048 22 C -0.169 4.169 23 H 0.082 0.918 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.295 -13.859 -0.021 14.048 hybrid contribution -1.405 0.310 -0.002 1.439 sum 0.889 -13.549 -0.022 13.579 Atomic orbital electron populations 1.69987 1.06100 1.28074 1.45403 1.25403 0.95895 0.99020 0.95716 0.85552 0.79494 0.79551 0.78320 1.18765 1.19970 1.19964 1.21364 0.92592 0.79211 1.52950 0.88193 1.83843 1.39093 1.13085 1.74810 1.21773 0.86339 0.86065 0.80590 1.90623 1.14886 1.87284 1.50830 1.23392 1.01245 0.93759 1.08508 1.86449 1.07998 0.91230 1.87366 1.22902 0.97423 1.00061 0.96364 1.20740 1.00900 0.88919 1.02609 1.20927 0.90455 1.00741 0.93232 1.21034 0.91609 0.84494 1.18313 1.43589 1.01372 1.02648 0.97207 1.94523 1.74983 1.14967 1.53878 1.94536 0.95930 1.93973 1.53824 1.20942 1.02082 0.89325 0.92453 1.21331 0.92076 0.99247 1.04213 0.91775 0.86057 0.86048 0.83005 0.82657 0.82714 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.80 13.67 55.48 0.76 -23.04 15 2 C 0.04 1.19 5.49 -17.53 -0.10 1.10 15 3 Si 0.95 20.13 29.55 -169.99 -5.02 15.11 15 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.39 -10.71 9.65 30.92 0.30 -10.41 15 8 H 0.10 2.80 6.86 -52.49 -0.36 2.44 15 9 O -0.20 -5.33 9.75 -20.73 -0.20 -5.53 15 10 C 0.41 9.06 7.92 36.01 0.29 9.34 15 11 O -0.54 -13.28 15.10 -19.05 -0.29 -13.57 15 12 C -0.12 -1.82 4.93 36.01 0.18 -1.64 15 13 S 0.02 0.26 21.06 -107.50 -2.26 -2.00 15 14 C -0.05 -0.56 6.11 -39.03 -0.24 -0.79 15 15 C -0.11 -0.96 9.79 -39.36 -0.39 -1.35 15 16 C -0.03 -0.29 9.55 -39.61 -0.38 -0.67 15 17 C -0.07 -0.73 6.85 -79.90 -0.55 -1.27 15 18 N 0.04 0.45 4.45 33.98 0.15 0.60 15 19 O -0.17 -2.24 18.44 -29.46 -0.54 -2.78 15 20 O -0.17 -2.28 18.44 -29.46 -0.54 -2.82 15 21 C -0.03 -0.26 9.55 -39.61 -0.38 -0.64 15 22 C -0.14 -1.41 9.36 -39.36 -0.37 -1.78 15 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.12 1.57 7.75 -51.93 -0.40 1.17 15 25 H 0.12 1.57 7.75 -51.92 -0.40 1.17 15 26 H 0.15 1.08 8.06 -52.49 -0.42 0.65 15 27 H 0.16 1.14 7.60 -52.49 -0.40 0.74 15 28 H 0.16 1.30 7.60 -52.49 -0.40 0.91 15 29 H 0.15 1.30 5.88 -52.49 -0.31 0.99 15 LS Contribution 290.80 15.07 4.38 4.38 Total: -1.00 -31.78 290.80 -7.03 -38.81 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -1.83 Total: -1.03 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.63 Total: -8.12 kcal Atomic # 7 Polarization: -23.35 SS G_CDS: 0.91 Total: -22.44 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -1.58 Total: -24.70 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.26 Total: -2.00 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.78 -7.03 -38.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004219466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.472 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds