Wall clock time and date at job start Tue Mar 31 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29022 * 124.91796 * 2 1 4 4 C 1.31782 * 117.12315 * 180.23334 * 3 2 1 5 5 C 1.50700 * 122.74578 * 179.75263 * 4 3 2 6 6 C 1.50702 * 109.47448 * 304.70119 * 5 4 3 7 7 N 1.30262 * 126.19335 * 89.99736 * 6 5 4 8 8 N 1.28662 * 109.53381 * 180.02562 * 7 6 5 9 9 C 1.31234 * 109.28420 * 0.02562 * 8 7 6 10 10 S 1.76200 * 126.37519 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00207 * 0.02562 * 10 9 8 12 12 H 1.08003 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.38686 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99867 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99994 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47265 * 89.99927 * 15 13 11 17 17 H 1.48506 * 109.46878 * 209.99755 * 15 13 11 18 18 H 1.48501 * 109.47136 * 329.99639 * 15 13 11 19 19 O 1.34620 * 126.20115 * 270.00725 * 6 5 4 20 20 C 1.33633 * 114.49974 * 359.47629 * 4 3 2 21 21 S 1.70979 * 124.91404 * 179.69956 * 2 1 3 22 22 H 1.08996 * 109.47355 * 180.28248 * 1 2 3 23 23 H 1.08999 * 109.47002 * 300.28147 * 1 2 3 24 24 H 1.09003 * 109.47523 * 60.27942 * 1 2 3 25 25 H 1.09004 * 109.47262 * 184.70662 * 5 4 3 26 26 H 1.08999 * 109.47547 * 64.70639 * 5 4 3 27 27 H 0.96999 * 119.99684 * 179.97438 * 14 13 11 28 28 H 1.08001 * 126.03607 * 180.27037 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8792 -0.0048 5 6 4.5307 2.0245 -0.0109 6 6 4.2380 2.9297 -1.1796 7 7 3.4341 3.9547 -1.1762 8 7 3.4239 4.4973 -2.3427 9 6 4.2277 3.8309 -3.1377 10 16 4.5513 4.1859 -4.8330 11 6 3.5229 5.5998 -5.0514 12 1 2.9366 5.9739 -4.2251 13 6 3.4654 6.2316 -6.2846 14 7 4.1795 5.7753 -7.2918 15 14 2.3756 7.7310 -6.5159 16 1 3.1495 8.9587 -6.2014 17 1 1.9059 7.7891 -7.9236 18 1 1.2051 7.6372 -5.6069 19 8 4.7597 2.8256 -2.4162 20 6 3.9353 -0.4007 0.0021 21 16 2.4856 -1.4020 0.0074 22 1 -0.3634 -1.0276 0.0051 23 1 -0.3633 0.5182 0.8874 24 1 -0.3634 0.5095 -0.8925 25 1 5.5449 1.6347 -0.0984 26 1 4.4369 2.5878 0.9175 27 1 4.1389 6.2170 -8.1544 28 1 4.9545 -0.7582 0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005834035.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:14 Heat of formation + Delta-G solvation = 73.524528 kcal Electronic energy + Delta-G solvation = -16586.596852 eV Core-core repulsion = 13664.698453 eV Total energy + Delta-G solvation = -2921.898399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.04996 -39.98674 -35.16188 -33.82664 -32.80457 -31.24487 -28.83333 -27.52649 -25.76841 -23.36754 -22.99973 -21.67135 -19.83024 -18.41805 -17.87985 -16.65541 -16.49793 -15.39201 -15.31308 -15.24040 -15.02807 -14.16421 -13.93898 -13.49943 -13.20216 -12.84757 -12.42937 -12.33359 -11.66943 -11.49722 -11.47045 -11.24888 -11.20279 -10.79710 -10.41905 -10.16269 -9.84867 -9.67105 -9.51488 -9.06168 -9.00849 -8.86691 -6.99326 -6.60048 -4.37204 0.56384 1.21333 1.52990 1.94576 2.07256 2.64058 3.13561 3.17781 3.26516 3.29365 3.61691 3.91164 3.94184 4.74704 4.80699 4.84730 4.89234 5.03472 5.10529 5.19179 5.31790 5.39859 5.66364 5.70150 5.97210 6.09005 6.20228 6.40425 7.44859 7.67749 8.23749 8.91416 9.21976 10.47573 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.027726 B = 0.003876 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.636882 B = 7222.028922 C = 7514.498541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.455 5.455 4 C 0.075 3.925 5 C 0.067 3.933 6 C 0.109 3.891 7 N -0.257 5.257 8 N -0.317 5.317 9 C 0.136 3.864 10 S 0.204 5.796 11 C -0.549 4.549 12 H 0.108 0.892 13 C 0.080 3.920 14 N -0.874 5.874 15 Si 0.937 3.063 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 O -0.226 6.226 20 C -0.252 4.252 21 S 0.109 5.891 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.278 0.722 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -14.211 13.002 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.224 4.224 3 N -0.169 5.169 4 C -0.058 4.058 5 C 0.025 3.975 6 C -0.109 4.109 7 N -0.105 5.105 8 N -0.170 5.170 9 C -0.177 4.177 10 S 0.438 5.562 11 C -0.697 4.697 12 H 0.126 0.874 13 C -0.131 4.131 14 N -0.508 5.508 15 Si 0.762 3.238 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.188 1.188 19 O -0.110 6.110 20 C -0.392 4.392 21 S 0.364 5.636 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.126 0.874 26 H 0.138 0.862 27 H 0.088 0.912 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.916 -14.379 12.351 19.052 hybrid contribution 0.129 1.210 0.176 1.230 sum -1.787 -13.169 12.527 18.263 Atomic orbital electron populations 1.20446 0.85074 1.03334 1.04841 1.27124 1.01933 0.90514 1.02868 1.66050 1.04297 1.31308 1.15230 1.19957 0.90244 0.93453 1.02195 1.18327 0.96820 0.89944 0.92370 1.26877 0.98304 0.99732 0.85999 1.74028 1.14911 1.06030 1.15486 1.74937 1.20939 1.25049 0.96117 1.31499 0.95031 0.86519 1.04616 1.83878 1.53345 1.34968 0.84010 1.23359 1.31278 1.13789 1.01311 0.87380 1.25107 0.95664 0.98265 0.94024 1.69929 1.38262 1.40182 1.02438 0.85845 0.80052 0.80183 0.77729 1.19697 1.20473 1.18849 1.84858 1.58306 1.46663 1.21194 1.26795 1.03405 0.95462 1.13492 1.83875 0.97893 1.13182 1.68686 0.90301 0.89235 0.89170 0.87426 0.86200 0.91245 0.80200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.47 36.01 0.38 -0.32 15 2 C 0.05 0.68 7.39 -13.46 -0.10 0.58 15 3 N -0.45 -7.14 10.39 -8.06 -0.08 -7.22 15 4 C 0.07 1.04 6.06 -84.23 -0.51 0.53 15 5 C 0.07 0.91 6.34 -29.03 -0.18 0.73 15 6 C 0.11 2.16 7.61 -12.94 -0.10 2.06 15 7 N -0.26 -5.99 12.21 32.60 0.40 -5.60 15 8 N -0.32 -8.25 11.06 30.32 0.34 -7.92 15 9 C 0.14 3.38 8.52 52.51 0.45 3.83 15 10 S 0.20 5.23 21.89 -107.50 -2.35 2.88 15 11 C -0.55 -15.35 9.37 30.90 0.29 -15.06 15 12 H 0.11 3.12 6.92 -52.48 -0.36 2.75 15 13 C 0.08 2.14 5.49 -17.48 -0.10 2.05 15 14 N -0.87 -24.05 13.22 55.48 0.73 -23.32 15 15 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 15 16 H -0.27 -5.97 7.11 56.52 0.40 -5.56 15 17 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 18 H -0.26 -5.96 7.11 56.52 0.40 -5.56 15 19 O -0.23 -4.99 10.90 3.75 0.04 -4.95 15 20 C -0.25 -2.77 11.07 29.12 0.32 -2.44 15 21 S 0.11 1.09 23.17 -107.50 -2.49 -1.40 15 22 H 0.08 0.50 8.12 -51.93 -0.42 0.08 15 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.11 1.08 8.03 -51.93 -0.42 0.66 15 26 H 0.12 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.28 7.07 8.31 -40.82 -0.34 6.74 15 28 H 0.18 1.40 8.06 -52.49 -0.42 0.98 15 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -33.31 289.91 -5.65 -38.97 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: -2.03 Total: -3.76 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.45 Total: -8.05 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 1.38 Total: -44.05 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.04 Total: -4.95 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -4.84 Total: 1.48 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.31 -5.65 -38.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005834035.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.490 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds