Wall clock time and date at job start Tue Mar 31 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37410 * 123.35307 * 2 1 4 4 C 1.33864 * 115.10690 * 179.77040 * 3 2 1 5 5 S 1.70622 * 110.96126 * 0.48570 * 4 3 2 6 6 C 1.36753 * 123.35185 * 180.29713 * 2 1 3 7 7 C 1.46385 * 125.46735 * 0.03354 * 6 2 1 8 8 O 1.21632 * 120.00013 * 359.97438 * 7 6 2 9 9 O 1.34898 * 119.99943 * 180.02562 * 7 6 2 10 10 C 1.45201 * 116.99821 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00080 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00328 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00287 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.46879 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00333 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99419 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00340 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47047 * 120.00144 * 19 17 15 22 22 H 1.48502 * 109.47123 * 240.00465 * 19 17 15 23 23 H 1.09001 * 109.46953 * 269.70260 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.69857 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.70488 * 1 2 3 26 26 H 1.07994 * 122.45085 * 359.97438 * 3 2 1 27 27 H 1.07997 * 124.52341 * 180.21728 * 4 3 2 28 28 H 1.08999 * 109.47549 * 300.00261 * 10 9 7 29 29 H 1.09007 * 109.47175 * 59.99964 * 10 9 7 30 30 H 0.96998 * 119.99662 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.46836 * 300.00266 * 14 13 11 32 32 H 1.09001 * 109.46603 * 60.00590 * 14 13 11 33 33 H 0.97006 * 119.99938 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2625 1.1478 0.0000 4 6 3.5873 0.9558 0.0049 5 16 3.9629 -0.7086 -0.0037 6 6 2.2589 -1.1423 -0.0059 7 6 1.7300 -2.5072 -0.0137 8 8 0.5281 -2.6937 -0.0148 9 8 2.5756 -3.5582 -0.0186 10 6 1.9808 -4.8828 -0.0256 11 6 3.0712 -5.9231 -0.0309 12 8 4.2349 -5.5818 -0.0285 13 7 2.7531 -7.2328 -0.0373 14 6 3.8130 -8.2441 -0.0430 15 6 3.1957 -9.6187 -0.0489 16 1 2.1213 -9.7282 -0.0489 17 6 4.0026 -10.7368 -0.0554 18 7 5.3109 -10.6034 -0.0560 19 14 3.2374 -12.4409 -0.0635 20 1 1.7574 -12.3189 -0.0621 21 1 3.6721 -13.1729 -1.2802 22 1 3.6743 -13.1854 1.1448 23 1 -0.3633 -0.0053 1.0277 24 1 -0.3634 0.8927 -0.5091 25 1 -0.3633 -0.8873 -0.5184 26 1 1.8199 2.1328 -0.0004 27 1 4.3207 1.7486 0.0089 28 1 1.3627 -5.0084 0.8634 29 1 1.3637 -4.9993 -0.9166 30 1 1.8223 -7.5058 -0.0389 31 1 4.4301 -8.1186 -0.9327 32 1 4.4310 -8.1276 0.8473 33 1 5.8787 -11.3900 -0.0602 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005967240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:59 Heat of formation + Delta-G solvation = -94.038252 kcal Electronic energy + Delta-G solvation = -18767.592245 eV Core-core repulsion = 15499.215251 eV Total energy + Delta-G solvation = -3268.376994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55567 -38.91655 -38.20951 -36.23015 -34.25706 -32.42101 -31.28907 -29.74031 -28.34904 -26.56326 -23.99052 -22.80488 -22.00428 -19.96992 -19.09396 -18.64973 -17.32328 -16.79703 -16.65491 -15.97176 -15.49565 -15.19710 -14.81367 -14.76323 -14.11477 -13.99429 -13.44763 -13.04813 -12.92311 -12.68994 -12.49632 -12.37525 -12.07906 -12.01035 -11.77902 -11.02435 -10.99537 -10.95167 -10.72573 -10.53906 -10.35335 -9.43102 -9.19400 -9.16922 -8.79516 -8.68530 -7.99832 -6.20492 -4.27761 0.15144 1.25646 1.70617 1.98748 2.36175 2.72349 3.16764 3.21991 3.29237 3.32264 3.97299 4.32507 4.55259 4.71586 4.87250 4.99492 5.13642 5.15776 5.22563 5.28393 5.32967 5.46418 5.62311 5.71312 5.99906 6.06252 6.36884 7.21707 7.29707 7.45024 7.56370 7.63618 7.91070 8.48886 8.70332 8.95345 9.38672 10.89700 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.042516 B = 0.002881 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.416032 B = 9718.005311 C =10350.671035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.012 4.012 3 C -0.156 4.156 4 C -0.234 4.234 5 S 0.268 5.732 6 C -0.272 4.272 7 C 0.540 3.460 8 O -0.500 6.500 9 O -0.327 6.327 10 C 0.051 3.949 11 C 0.500 3.500 12 O -0.533 6.533 13 N -0.706 5.706 14 C 0.251 3.749 15 C -0.545 4.545 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.393 0.607 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 22.623 0.100 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.028 4.028 3 C -0.188 4.188 4 C -0.372 4.372 5 S 0.538 5.462 6 C -0.391 4.391 7 C 0.384 3.616 8 O -0.390 6.390 9 O -0.242 6.242 10 C -0.026 4.026 11 C 0.282 3.718 12 O -0.411 6.411 13 N -0.356 5.356 14 C 0.131 3.869 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.163 0.837 27 H 0.189 0.811 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.226 0.774 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.602 21.808 0.095 22.517 hybrid contribution -2.123 -0.215 0.016 2.134 sum -7.725 21.594 0.111 22.934 Atomic orbital electron populations 1.20786 0.88580 1.04051 1.03268 1.19533 0.97880 0.90084 0.95311 1.19842 0.92556 0.99469 1.06891 1.25599 1.00895 1.03386 1.07362 1.83753 1.02207 0.95450 1.64778 1.23370 0.98882 0.93896 1.22904 1.19624 0.84495 0.84388 0.73049 1.90833 1.15596 1.85935 1.46684 1.86640 1.39083 1.14607 1.83873 1.22893 0.95875 0.79082 1.04766 1.19865 0.89358 0.83721 0.78816 1.90710 1.19831 1.80992 1.49527 1.46360 1.11995 1.04844 1.72427 1.19184 0.85579 0.84112 0.98043 1.21244 0.93474 0.90177 1.53385 0.91706 1.24959 0.94773 0.99674 0.94617 1.69985 1.03103 1.30324 1.48773 0.86336 0.79315 0.83335 0.77780 1.19595 1.20766 1.20760 0.90398 0.91313 0.88973 0.83651 0.81134 0.88313 0.88325 0.77400 0.95237 0.95234 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.55 36.01 0.34 -0.65 16 2 C -0.01 -0.13 5.91 -105.46 -0.62 -0.75 16 3 C -0.16 -1.31 9.97 -41.42 -0.41 -1.72 16 4 C -0.23 -1.88 10.92 29.20 0.32 -1.56 16 5 S 0.27 2.86 22.92 -107.50 -2.46 0.40 16 6 C -0.27 -3.44 6.45 -36.84 -0.24 -3.68 16 7 C 0.54 8.02 7.92 34.01 0.27 8.29 16 8 O -0.50 -7.71 14.04 -19.37 -0.27 -7.98 16 9 O -0.33 -5.40 9.61 -47.72 -0.46 -5.86 16 10 C 0.05 0.79 5.96 36.00 0.21 1.01 16 11 C 0.50 10.03 7.91 -10.99 -0.09 9.94 16 12 O -0.53 -13.02 16.50 -14.10 -0.23 -13.26 16 13 N -0.71 -14.55 5.55 -61.47 -0.34 -14.89 16 14 C 0.25 6.54 5.43 -5.20 -0.03 6.52 16 15 C -0.54 -14.55 9.28 -34.44 -0.32 -14.86 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 19 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 1.01 6.01 -51.93 -0.31 0.70 16 26 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -33.06 312.72 -7.57 -40.63 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.57 Total: 1.51 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.66 Total: 4.17 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.40 Total: -39.95 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.96 Total: -27.09 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.46 Total: 0.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.06 -7.57 -40.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005967240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.410 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds