Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86804 * 120.00146 * 2 1 4 4 H 1.48497 * 109.46889 * 270.00138 * 3 2 1 5 5 H 1.48498 * 109.46780 * 29.99719 * 3 2 1 6 6 H 1.48498 * 109.47270 * 149.99858 * 3 2 1 7 7 C 1.38755 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00037 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99678 * 179.97438 * 9 7 2 11 11 O 1.21208 * 120.00037 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99791 * 179.97438 * 10 9 7 13 13 S 1.81399 * 109.47038 * 180.02562 * 12 10 9 14 14 C 1.76196 * 102.99751 * 179.97438 * 13 12 10 15 15 C 1.38991 * 120.08264 * 0.02562 * 14 13 12 16 16 C 1.38065 * 119.91907 * 179.97438 * 15 14 13 17 17 C 1.38324 * 120.08029 * 359.97438 * 16 15 14 18 18 C 1.38271 * 120.16157 * 0.02562 * 17 16 15 19 19 C 1.38108 * 120.08151 * 359.97438 * 18 17 16 20 20 N 1.48011 * 120.04202 * 180.02562 * 19 18 17 21 21 O 1.21800 * 119.99500 * 359.97438 * 20 19 18 22 22 O 1.21792 * 119.99623 * 179.97438 * 20 19 18 23 23 H 0.96997 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46563 * 60.00411 * 12 10 9 25 25 H 1.08999 * 109.47029 * 300.00411 * 12 10 9 26 26 H 1.08001 * 120.04165 * 359.95506 * 15 14 13 27 27 H 1.08005 * 119.95297 * 179.71901 * 16 15 14 28 28 H 1.07996 * 119.91724 * 180.02562 * 17 16 15 29 29 H 1.08005 * 119.96251 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0883 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0652 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3810 -4.8393 -0.0011 13 16 2.6303 -6.1545 -0.0020 14 6 1.6586 -7.6242 -0.0005 15 6 0.2711 -7.5420 0.0004 16 6 -0.4871 -8.6959 0.0010 17 6 0.1325 -9.9326 0.0002 18 6 1.5125 -10.0182 -0.0007 19 6 2.2775 -8.8683 -0.0014 20 7 3.7547 -8.9610 -0.0029 21 8 4.2963 -10.0519 -0.0032 22 8 4.4284 -7.9464 -0.0040 23 1 -0.4850 0.8400 -0.0004 24 1 0.7573 -4.9295 -0.8905 25 1 0.7592 -4.9299 0.8895 26 1 -0.2134 -6.5768 0.0009 27 1 -1.5653 -8.6326 0.0063 28 1 -0.4632 -10.8334 0.0003 29 1 1.9930 -10.9855 -0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006539585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = -66.967561 kcal Electronic energy + Delta-G solvation = -18772.849380 eV Core-core repulsion = 15369.813165 eV Total energy + Delta-G solvation = -3403.036216 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.24812 -41.09811 -40.22140 -37.70777 -37.41299 -34.39071 -33.13186 -32.78239 -31.28417 -27.65817 -27.37721 -24.26415 -23.72626 -22.40870 -20.60193 -19.98278 -19.73761 -18.80603 -18.63640 -18.33395 -17.14136 -16.82361 -16.64454 -16.27689 -16.22159 -15.47811 -14.86330 -14.81189 -14.39720 -14.19507 -13.65025 -13.35429 -13.11132 -12.94774 -12.54378 -12.44868 -12.44173 -12.34005 -12.18475 -12.08968 -11.27256 -11.14000 -10.97246 -10.75356 -10.64628 -8.84418 -8.60713 -6.40742 -1.27977 -0.16032 -0.11272 0.28613 0.40493 1.08305 1.20474 1.33614 1.49785 1.54133 2.06576 2.25410 2.57578 2.90718 3.24763 3.65626 3.86579 3.91353 3.97856 4.02575 4.08756 4.49072 4.53784 4.65381 4.96156 5.10395 5.11860 5.18144 5.51999 5.75143 6.46233 6.51447 6.84136 7.60380 8.59327 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.003803 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.144559 B = 7360.963915 C = 8212.964634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.001 3.999 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.423 4.423 8 H 0.082 0.918 9 O -0.232 6.232 10 C 0.411 3.589 11 O -0.568 6.568 12 C -0.140 4.140 13 S 0.036 5.964 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.025 4.025 17 C -0.113 4.113 18 C -0.035 4.035 19 C -0.065 4.065 20 N 0.032 4.968 21 O -0.158 6.158 22 O -0.210 6.210 23 H 0.281 0.719 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.159 0.841 27 H 0.189 0.811 28 H 0.194 0.806 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -19.833 -0.006 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.190 1.190 7 C -0.499 4.499 8 H 0.100 0.900 9 O -0.140 6.140 10 C 0.257 3.743 11 O -0.465 6.465 12 C -0.287 4.287 13 S 0.284 5.716 14 C -0.185 4.185 15 C -0.172 4.172 16 C -0.045 4.045 17 C -0.134 4.134 18 C -0.055 4.055 19 C -0.158 4.158 20 N 0.539 4.461 21 O -0.377 6.377 22 O -0.408 6.408 23 H 0.091 0.909 24 H 0.163 0.837 25 H 0.163 0.837 26 H 0.176 0.824 27 H 0.206 0.794 28 H 0.211 0.789 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.530 -19.165 -0.002 20.247 hybrid contribution -0.116 0.788 -0.004 0.797 sum -6.647 -18.377 -0.006 19.542 Atomic orbital electron populations 1.70045 1.07493 1.29617 1.46251 1.26511 0.96937 1.02158 0.94428 0.84635 0.77685 0.74523 0.79605 1.18407 1.18125 1.19012 1.21450 0.92264 0.80807 1.55345 0.90005 1.83861 1.39840 1.13819 1.76459 1.23040 0.86333 0.87370 0.77518 1.90605 1.16745 1.88096 1.51094 1.23627 1.03085 0.91492 1.10491 1.88274 1.04791 0.91588 1.86934 1.22283 0.99285 0.96162 1.00754 1.21676 0.89055 1.02908 1.03532 1.22108 1.03066 0.90591 0.88748 1.21779 0.91806 1.00518 0.99313 1.21415 0.95158 0.96540 0.92399 1.20826 0.77742 0.96324 1.20880 1.44035 1.04692 1.00039 0.97382 1.94430 1.75065 1.15381 1.52831 1.94542 1.63929 1.25576 1.56747 0.90950 0.83733 0.83742 0.82388 0.79407 0.78910 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.47 13.67 21.62 0.30 -51.17 15 2 C 0.00 0.04 5.49 84.87 0.47 0.51 15 3 Si 1.02 42.91 29.55 68.60 2.03 44.93 15 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.42 -25.40 9.64 67.94 0.66 -24.75 15 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 15 9 O -0.23 -13.29 9.75 14.80 0.14 -13.14 15 10 C 0.41 20.40 7.92 71.24 0.56 20.97 15 11 O -0.57 -31.81 15.10 20.78 0.31 -31.49 15 12 C -0.14 -4.76 4.93 71.24 0.35 -4.41 15 13 S 0.04 1.25 17.88 -56.49 -1.01 0.24 15 14 C -0.07 -1.74 6.11 22.62 0.14 -1.60 15 15 C -0.15 -2.47 9.36 22.41 0.21 -2.26 15 16 C -0.02 -0.21 10.04 22.25 0.22 0.01 15 17 C -0.11 -0.85 10.04 22.30 0.22 -0.63 15 18 C -0.03 -0.52 9.55 22.25 0.21 -0.31 15 19 C -0.07 -1.64 6.87 36.52 0.25 -1.39 15 20 N 0.03 1.04 4.45 -46.13 -0.21 0.83 15 21 O -0.16 -4.84 18.45 18.89 0.35 -4.49 15 22 O -0.21 -8.07 15.81 18.90 0.30 -7.78 15 23 H 0.28 14.56 8.31 -92.71 -0.77 13.79 15 24 H 0.14 4.06 7.75 -2.39 -0.02 4.04 15 25 H 0.14 4.06 7.75 -2.39 -0.02 4.04 15 26 H 0.16 2.32 5.88 -2.91 -0.02 2.30 15 27 H 0.19 0.10 8.06 -2.91 -0.02 0.08 15 28 H 0.19 -0.21 8.06 -2.91 -0.02 -0.24 15 29 H 0.17 1.92 7.61 -2.91 -0.02 1.90 15 Total: -1.00 -81.05 286.22 6.72 -74.33 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.21 Total: 1.58 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 3.30 Total: -13.85 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.09 Total: -50.34 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: 1.11 Total: -56.90 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.01 Total: 0.24 kcal Total: -81.05 6.72 -74.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006539585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.366 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds