Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21259 * 119.99956 * 2 1 4 4 C 1.47165 * 120.00511 * 179.97438 * 2 1 3 5 5 C 1.39853 * 120.17673 * 180.02562 * 4 2 1 6 6 C 1.37878 * 119.82552 * 180.02562 * 5 4 2 7 7 C 1.38405 * 120.17467 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.82780 * 179.70352 * 7 6 5 9 9 O 1.42098 * 106.40539 * 203.53899 * 8 7 6 10 10 O 1.42098 * 106.40464 * 336.46300 * 8 7 6 11 11 N 1.65605 * 107.21820 * 89.99882 * 8 7 6 12 12 C 1.46500 * 119.99971 * 65.00332 * 11 8 7 13 13 C 1.50700 * 109.47153 * 164.99910 * 12 11 8 14 14 H 1.07999 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99891 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99945 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47145 * 90.00324 * 17 15 13 19 19 H 1.48498 * 109.47000 * 210.00588 * 17 15 13 20 20 H 1.48502 * 109.46928 * 330.00109 * 17 15 13 21 21 C 1.38402 * 120.34865 * 359.97438 * 7 6 5 22 22 C 1.37886 * 120.17250 * 0.02562 * 21 7 6 23 23 H 1.08995 * 109.47074 * 269.99804 * 1 2 3 24 24 H 1.08997 * 109.46635 * 30.00197 * 1 2 3 25 25 H 1.09006 * 109.46403 * 149.99874 * 1 2 3 26 26 H 1.08000 * 120.08271 * 359.97438 * 5 4 2 27 27 H 1.07997 * 119.91672 * 180.02562 * 6 5 4 28 28 H 0.97001 * 120.00259 * 245.00488 * 11 8 7 29 29 H 1.08999 * 109.46921 * 285.00153 * 12 11 8 30 30 H 1.08993 * 109.47224 * 44.99691 * 12 11 8 31 31 H 0.96998 * 119.99682 * 179.97438 * 16 15 13 32 32 H 1.08005 * 119.91752 * 179.97438 * 21 7 6 33 33 H 1.08006 * 120.08952 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2744 0.0006 5 6 3.6415 -1.2786 0.0011 6 6 4.3237 -2.4768 0.0011 7 6 3.6281 -3.6734 0.0000 8 16 4.5090 -5.1992 -0.0079 9 8 3.6254 -6.1700 -0.5520 10 8 5.7900 -4.9202 -0.5561 11 7 4.7600 -5.6286 1.5717 12 6 3.6198 -5.9504 2.4334 13 6 4.1099 -6.6507 3.6745 14 1 5.1652 -6.8369 3.8084 15 6 3.2110 -7.0526 4.6398 16 7 1.9259 -6.8254 4.4770 17 14 3.8186 -7.9199 6.1786 18 1 4.1168 -6.9135 7.2290 19 1 2.7707 -8.8511 6.6684 20 1 5.0514 -8.6848 5.8616 21 6 2.2440 -3.6776 -0.0005 22 6 1.5473 -2.4877 -0.0005 23 1 -0.3633 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3632 -0.8901 -0.5139 26 1 4.1856 -0.3457 0.0007 27 1 5.4036 -2.4818 0.0019 28 1 5.6620 -5.6669 1.9265 29 1 3.1055 -5.0312 2.7138 30 1 2.9312 -6.6026 1.8963 31 1 1.2936 -7.1085 5.1559 32 1 1.7083 -4.6154 -0.0018 33 1 0.4673 -2.4926 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007306698.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = -90.820231 kcal Electronic energy + Delta-G solvation = -19560.183797 eV Core-core repulsion = 16291.946347 eV Total energy + Delta-G solvation = -3268.237451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16375 -38.28929 -36.82684 -35.44292 -34.70759 -32.38897 -32.21276 -31.21230 -29.60230 -26.81053 -24.39779 -22.83467 -22.50166 -20.25387 -19.18190 -17.95315 -17.42985 -16.58316 -16.09135 -15.93691 -15.32259 -15.24501 -14.87874 -14.62877 -14.21334 -13.74125 -13.62488 -13.22270 -13.03742 -12.63447 -12.46889 -12.36443 -12.18769 -11.88716 -11.70371 -11.61560 -11.29533 -10.99982 -10.83342 -10.74502 -10.18646 -10.02051 -9.50113 -9.46634 -9.14236 -8.97780 -8.31045 -6.23918 -4.28500 0.13475 0.87726 1.23232 2.02838 3.21941 3.28733 3.31412 3.38948 3.65907 3.76821 4.15530 4.30045 4.46704 4.70583 4.76524 4.87051 5.10406 5.13090 5.14001 5.23868 5.37781 5.51083 5.61473 5.84859 5.97877 6.03795 6.10291 6.34478 6.66854 7.19716 7.20769 7.25538 7.71046 7.74057 8.10242 8.75457 9.36887 10.86488 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.005004 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.437649 B = 5593.946485 C = 6612.386885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.395 3.605 3 O -0.455 6.455 4 C -0.129 4.129 5 C -0.088 4.088 6 C -0.033 4.033 7 C -0.641 4.641 8 S 2.688 3.312 9 O -0.958 6.958 10 O -0.976 6.976 11 N -1.101 6.101 12 C 0.245 3.755 13 C -0.531 4.531 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.026 4.026 22 C -0.095 4.095 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.412 0.588 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.151 0.849 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 10.021 -7.959 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.273 3.727 3 O -0.330 6.330 4 C -0.130 4.130 5 C -0.107 4.107 6 C -0.052 4.052 7 C -0.725 4.725 8 S 2.775 3.225 9 O -0.948 6.948 10 O -0.966 6.966 11 N -0.863 5.863 12 C 0.122 3.878 13 C -0.570 4.570 14 H 0.085 0.915 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.045 4.045 22 C -0.114 4.114 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.247 0.753 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.075 10.119 -8.688 13.498 hybrid contribution 0.129 0.079 1.460 1.468 sum -1.947 10.199 -7.228 12.651 Atomic orbital electron populations 1.22259 0.93263 1.05126 1.05217 1.22621 0.91952 0.87422 0.70719 1.90538 1.72244 1.34258 1.35994 1.20814 0.94869 0.94976 1.02313 1.21484 0.93247 0.98827 0.97124 1.20916 1.00580 0.90767 0.92903 1.31580 1.06781 1.21392 1.12778 1.02025 0.73214 0.73752 0.73526 1.93577 1.67249 1.56630 1.77309 1.93538 1.39629 1.85820 1.77630 1.55445 1.17159 1.83402 1.30336 1.19121 0.82841 0.96126 0.89745 1.21187 0.94180 1.38789 1.02864 0.91537 1.24963 0.94769 0.95752 0.98634 1.69926 1.01312 1.46437 1.35170 0.86402 0.78626 0.79409 0.82442 1.20509 1.20992 1.19651 1.21043 0.92201 0.99656 0.91599 1.21595 1.00548 0.91311 0.97929 0.87999 0.89266 0.89161 0.84269 0.83690 0.75327 0.96012 0.94209 0.92422 0.83169 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 9.76 36.01 0.35 -1.14 16 2 C 0.39 4.51 7.23 -30.68 -0.22 4.29 16 3 O -0.45 -6.51 17.09 5.58 0.10 -6.42 16 4 C -0.13 -1.62 5.87 -105.06 -0.62 -2.23 16 5 C -0.09 -1.17 9.60 -39.11 -0.38 -1.54 16 6 C -0.03 -0.46 9.50 -39.65 -0.38 -0.84 16 7 C -0.64 -10.03 5.96 -39.46 -0.24 -10.27 16 8 S 2.69 47.57 5.73 -107.50 -0.62 46.95 16 9 O -0.96 -19.48 16.73 -57.17 -0.96 -20.44 16 10 O -0.98 -18.06 17.27 -57.17 -0.99 -19.05 16 11 N -1.10 -21.21 5.99 -11.66 -0.07 -21.28 16 12 C 0.24 5.78 5.98 -5.19 -0.03 5.74 16 13 C -0.53 -13.77 9.27 -34.44 -0.32 -14.09 16 14 H 0.07 1.65 7.65 -52.49 -0.40 1.25 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 17 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.03 -0.38 9.50 -39.65 -0.38 -0.76 16 22 C -0.10 -1.15 9.37 -39.10 -0.37 -1.51 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.51 6.47 -51.93 -0.34 0.17 16 26 H 0.14 1.65 7.65 -52.49 -0.40 1.25 16 27 H 0.15 1.81 7.60 -52.49 -0.40 1.41 16 28 H 0.41 7.23 8.54 -34.48 -0.29 6.94 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.15 2.13 7.60 -52.48 -0.40 1.73 16 33 H 0.14 1.20 6.36 -52.48 -0.33 0.87 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -32.77 306.78 -8.23 -41.00 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.37 Total: 3.97 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.66 Total: -20.79 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.67 Total: -45.12 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.85 Total: -45.91 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 47.57 SS G_CDS: -0.62 Total: 46.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.77 -8.23 -41.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007306698.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.822 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds