Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21259 * 119.99956 * 2 1 4 4 C 1.47165 * 120.00511 * 179.97438 * 2 1 3 5 5 C 1.39853 * 120.17673 * 180.02562 * 4 2 1 6 6 C 1.37878 * 119.82552 * 180.02562 * 5 4 2 7 7 C 1.38405 * 120.17467 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.82780 * 179.70352 * 7 6 5 9 9 O 1.42098 * 106.40539 * 203.53899 * 8 7 6 10 10 O 1.42098 * 106.40464 * 336.46300 * 8 7 6 11 11 N 1.65605 * 107.21820 * 89.99882 * 8 7 6 12 12 C 1.46500 * 119.99971 * 65.00332 * 11 8 7 13 13 C 1.50700 * 109.47153 * 164.99910 * 12 11 8 14 14 H 1.07999 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99891 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99945 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47145 * 90.00324 * 17 15 13 19 19 H 1.48498 * 109.47000 * 210.00588 * 17 15 13 20 20 H 1.48502 * 109.46928 * 330.00109 * 17 15 13 21 21 C 1.38402 * 120.34865 * 359.97438 * 7 6 5 22 22 C 1.37886 * 120.17250 * 0.02562 * 21 7 6 23 23 H 1.08995 * 109.47074 * 269.99804 * 1 2 3 24 24 H 1.08997 * 109.46635 * 30.00197 * 1 2 3 25 25 H 1.09006 * 109.46403 * 149.99874 * 1 2 3 26 26 H 1.08000 * 120.08271 * 359.97438 * 5 4 2 27 27 H 1.07997 * 119.91672 * 180.02562 * 6 5 4 28 28 H 0.97001 * 120.00259 * 245.00488 * 11 8 7 29 29 H 1.08999 * 109.46921 * 285.00153 * 12 11 8 30 30 H 1.08993 * 109.47224 * 44.99691 * 12 11 8 31 31 H 0.96998 * 119.99682 * 179.97438 * 16 15 13 32 32 H 1.08005 * 119.91752 * 179.97438 * 21 7 6 33 33 H 1.08006 * 120.08952 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2744 0.0006 5 6 3.6415 -1.2786 0.0011 6 6 4.3237 -2.4768 0.0011 7 6 3.6281 -3.6734 0.0000 8 16 4.5090 -5.1992 -0.0079 9 8 3.6254 -6.1700 -0.5520 10 8 5.7900 -4.9202 -0.5561 11 7 4.7600 -5.6286 1.5717 12 6 3.6198 -5.9504 2.4334 13 6 4.1099 -6.6507 3.6745 14 1 5.1652 -6.8369 3.8084 15 6 3.2110 -7.0526 4.6398 16 7 1.9259 -6.8254 4.4770 17 14 3.8186 -7.9199 6.1786 18 1 4.1168 -6.9135 7.2290 19 1 2.7707 -8.8511 6.6684 20 1 5.0514 -8.6848 5.8616 21 6 2.2440 -3.6776 -0.0005 22 6 1.5473 -2.4877 -0.0005 23 1 -0.3633 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3632 -0.8901 -0.5139 26 1 4.1856 -0.3457 0.0007 27 1 5.4036 -2.4818 0.0019 28 1 5.6620 -5.6669 1.9265 29 1 3.1055 -5.0312 2.7138 30 1 2.9312 -6.6026 1.8963 31 1 1.2936 -7.1085 5.1559 32 1 1.7083 -4.6154 -0.0018 33 1 0.4673 -2.4926 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007306698.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = -114.460332 kcal Electronic energy + Delta-G solvation = -19561.208909 eV Core-core repulsion = 16291.946347 eV Total energy + Delta-G solvation = -3269.262562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14823 -39.32487 -38.34563 -36.97410 -36.48476 -34.13137 -33.36419 -32.27955 -30.38746 -28.72944 -25.43390 -24.50980 -23.79142 -21.26803 -20.54817 -19.37080 -18.94763 -17.82992 -17.55324 -17.34886 -16.80828 -16.27198 -16.11756 -15.86669 -15.34071 -15.17344 -14.74714 -14.63084 -14.34426 -14.11805 -13.93515 -13.59177 -13.26704 -13.17774 -13.06962 -13.04091 -12.75674 -12.54393 -12.32556 -12.13379 -12.04786 -11.41380 -10.97378 -10.84015 -10.56441 -10.20831 -10.12054 -8.24376 -6.35623 -0.95436 -0.53988 0.17318 1.05889 1.46060 1.47131 1.57645 2.07585 2.41483 2.45362 2.75659 2.90293 3.11044 3.27845 3.63337 3.77820 4.02280 4.15437 4.24356 4.41957 4.57492 4.59535 4.64898 4.81416 4.88343 4.94064 5.02818 5.21818 5.27792 5.31644 5.61710 5.75288 5.97733 6.29975 6.33707 6.77793 7.33891 8.86622 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.005004 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.437649 B = 5593.946485 C = 6612.386885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.398 3.602 3 O -0.489 6.489 4 C -0.132 4.132 5 C -0.095 4.095 6 C -0.040 4.040 7 C -0.653 4.653 8 S 2.706 3.294 9 O -0.988 6.988 10 O -0.984 6.984 11 N -1.102 6.102 12 C 0.257 3.743 13 C -0.551 4.551 14 H 0.073 0.927 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.969 3.031 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.045 4.045 22 C -0.083 4.083 23 H 0.118 0.882 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.419 0.581 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.269 0.731 32 H 0.148 0.852 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 10.877 -7.552 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.278 3.722 3 O -0.366 6.366 4 C -0.133 4.133 5 C -0.114 4.114 6 C -0.059 4.059 7 C -0.741 4.741 8 S 2.797 3.203 9 O -0.978 6.978 10 O -0.975 6.975 11 N -0.864 5.864 12 C 0.133 3.867 13 C -0.591 4.591 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.562 5.562 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.065 4.065 22 C -0.101 4.101 23 H 0.136 0.864 24 H 0.118 0.882 25 H 0.131 0.869 26 H 0.168 0.832 27 H 0.174 0.826 28 H 0.255 0.745 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.166 0.834 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.713 10.935 -8.288 13.986 hybrid contribution 0.313 -0.089 1.262 1.303 sum -2.400 10.845 -7.026 13.143 Atomic orbital electron populations 1.22329 0.89617 1.06822 1.06622 1.23120 0.93730 0.86101 0.69207 1.90537 1.73282 1.35085 1.37737 1.21187 0.94864 0.96089 1.01147 1.21718 0.94070 0.98842 0.96795 1.21092 1.01314 0.90577 0.92936 1.31126 1.07321 1.20212 1.15438 1.01204 0.72730 0.73891 0.72462 1.93531 1.67854 1.58760 1.77682 1.93519 1.40374 1.86138 1.77420 1.55272 1.16573 1.84174 1.30343 1.18720 0.83534 0.95055 0.89415 1.21622 0.94714 1.38945 1.03791 0.90888 1.25820 0.94912 0.96419 1.01713 1.70029 1.02393 1.47451 1.36298 0.85379 0.78181 0.78346 0.78698 1.19750 1.20805 1.18989 1.21242 0.91970 1.00838 0.92417 1.21966 1.02462 0.89860 0.95832 0.86432 0.88238 0.86882 0.83181 0.82569 0.74533 0.96740 0.96516 0.92218 0.83397 0.79995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 9.76 71.24 0.69 -1.50 16 2 C 0.40 8.15 7.23 28.03 0.20 8.35 16 3 O -0.49 -13.28 17.09 -2.96 -0.05 -13.33 16 4 C -0.13 -3.05 5.87 -20.15 -0.12 -3.17 16 5 C -0.10 -2.42 9.60 22.58 0.22 -2.20 16 6 C -0.04 -1.11 9.50 22.22 0.21 -0.90 16 7 C -0.65 -20.33 5.96 22.35 0.13 -20.20 16 8 S 2.71 97.11 5.73 -56.49 -0.32 96.79 16 9 O -0.99 -41.16 16.73 -128.00 -2.14 -43.31 16 10 O -0.98 -36.45 17.27 -128.00 -2.21 -38.66 16 11 N -1.10 -43.07 5.99 -190.80 -1.14 -44.22 16 12 C 0.26 12.37 5.98 85.63 0.51 12.88 16 13 C -0.55 -28.71 9.27 25.60 0.24 -28.47 16 14 H 0.07 3.60 7.65 -2.91 -0.02 3.58 16 15 C 0.01 0.62 5.46 84.66 0.46 1.08 16 16 N -0.92 -51.16 13.29 21.45 0.28 -50.88 16 17 Si 0.97 41.22 29.54 68.60 2.03 43.24 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 C -0.05 -1.29 9.50 22.23 0.21 -1.08 16 22 C -0.08 -1.81 9.37 22.58 0.21 -1.59 16 23 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 24 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.11 0.75 6.47 -2.38 -0.02 0.73 16 26 H 0.15 3.42 7.65 -2.91 -0.02 3.39 16 27 H 0.16 3.82 7.60 -2.91 -0.02 3.80 16 28 H 0.42 14.82 8.54 -96.74 -0.83 14.00 16 29 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.02 0.88 7.75 -2.39 -0.02 0.86 16 31 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.15 4.22 7.60 -2.91 -0.02 4.20 16 33 H 0.18 2.37 6.36 -2.91 -0.02 2.35 16 Total: -1.00 -69.93 306.78 -0.26 -70.19 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.32 Total: 16.97 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 2.97 Total: -36.80 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -0.86 Total: -95.09 kcal Atomic # 8 Polarization: -90.89 SS G_CDS: -4.40 Total: -95.29 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 97.11 SS G_CDS: -0.32 Total: 96.79 kcal Total: -69.93 -0.26 -70.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007306698.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.274 kcal (2) G-P(sol) polarization free energy of solvation -69.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds