Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31723 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48494 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46757 * 299.99821 * 3 2 1 6 6 H 1.48499 * 109.47392 * 59.99678 * 3 2 1 7 7 C 1.38540 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00081 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.76199 * 100.00270 * 179.97438 * 9 7 2 11 11 N 1.30223 * 126.08741 * 359.97433 * 10 9 7 12 12 N 1.26103 * 117.72326 * 179.97438 * 11 10 9 13 13 C 1.30257 * 117.70616 * 0.02562 * 12 11 10 14 14 N 1.38654 * 126.08987 * 180.02562 * 13 12 11 15 15 C 1.46503 * 120.00455 * 0.02562 * 14 13 12 16 16 C 1.50696 * 109.47412 * 179.97438 * 15 14 13 17 17 C 1.34515 * 125.78542 * 90.00131 * 16 15 14 18 18 C 1.41388 * 106.83843 * 179.97438 * 17 16 15 19 19 C 1.34506 * 106.83998 * 359.97438 * 18 17 16 20 20 O 1.34304 * 125.79125 * 269.95896 * 16 15 14 21 21 S 1.76475 * 107.81524 * 0.26025 * 13 12 11 22 22 H 0.96998 * 119.99984 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00314 * 180.02562 * 14 13 12 24 24 H 1.09002 * 109.46978 * 59.99964 * 15 14 13 25 25 H 1.09000 * 109.46760 * 300.00453 * 15 14 13 26 26 H 1.08001 * 126.58408 * 359.70263 * 17 16 15 27 27 H 1.08000 * 126.57885 * 180.02562 * 18 17 16 28 28 H 1.08004 * 125.79242 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2512 1.6178 0.0000 4 1 3.7112 1.3464 -0.0006 5 1 1.8925 2.3964 -1.2125 6 1 1.8925 2.3965 1.2124 7 6 2.0099 -1.1998 0.0005 8 1 3.0900 -1.1998 0.0001 9 16 1.1290 -2.7258 0.0005 10 6 2.4787 -3.8584 0.0005 11 7 3.7428 -3.5453 0.0001 12 7 4.5806 -4.4877 0.0006 13 6 4.1210 -5.7066 0.0012 14 7 4.8813 -6.8661 0.0023 15 6 6.3440 -6.7831 0.0037 16 6 6.9260 -8.1731 0.0054 17 6 7.2309 -8.8996 -1.0849 18 6 7.7475 -10.1324 -0.6243 19 6 7.7279 -10.0854 0.7198 20 8 7.2291 -8.8964 1.0957 21 16 2.3585 -5.6190 -0.0068 22 1 -0.4850 0.8400 -0.0004 23 1 4.4448 -7.7323 0.0023 24 1 6.6768 -6.2492 0.8938 25 1 6.6784 -6.2498 -0.8862 26 1 7.1015 -8.6004 -2.1145 27 1 8.0925 -10.9540 -1.2346 28 1 8.0574 -10.8705 1.3842 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014302888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = 77.909747 kcal Electronic energy + Delta-G solvation = -16091.099037 eV Core-core repulsion = 13169.390795 eV Total energy + Delta-G solvation = -2921.708242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.85275 -39.83488 -36.26294 -33.27543 -32.75561 -31.17523 -29.16519 -26.37488 -25.71696 -24.50456 -22.03778 -21.02623 -19.92696 -19.14342 -18.02129 -17.31087 -16.95268 -16.15513 -15.56067 -15.19181 -15.00482 -14.42957 -14.07850 -13.65899 -13.11765 -13.05505 -12.92493 -12.71110 -12.32167 -11.31076 -11.22489 -11.10440 -10.74219 -10.30077 -10.22730 -9.72040 -9.50992 -9.46338 -9.04131 -8.90500 -8.81717 -8.05983 -6.70114 -6.55296 -4.25546 1.11996 1.36975 1.51011 1.96158 2.29228 2.67419 2.88605 3.14609 3.20867 3.31581 3.52671 3.60215 3.96597 4.33295 4.72992 4.76383 4.89825 5.00110 5.20509 5.35910 5.48168 5.55390 5.66154 5.78763 6.07226 6.17987 6.84074 6.99903 7.36199 7.49558 8.30566 8.96703 9.61197 10.51954 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.041264 B = 0.003253 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.399567 B = 8604.966245 C = 9095.404575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.076 3.924 3 Si 0.933 3.067 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.108 0.892 9 S 0.183 5.817 10 C -0.004 4.004 11 N -0.267 5.267 12 N -0.317 5.317 13 C 0.251 3.749 14 N -0.697 5.697 15 C 0.223 3.777 16 C -0.031 4.031 17 C -0.185 4.185 18 C -0.218 4.218 19 C -0.033 4.033 20 O -0.171 6.171 21 S 0.005 5.995 22 H 0.276 0.724 23 H 0.412 0.588 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.181 -17.885 -0.462 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.686 4.686 8 H 0.126 0.874 9 S 0.418 5.582 10 C -0.391 4.391 11 N -0.110 5.110 12 N -0.162 5.162 13 C -0.128 4.128 14 N -0.342 5.342 15 C 0.097 3.903 16 C -0.082 4.082 17 C -0.205 4.205 18 C -0.238 4.238 19 C -0.101 4.101 20 O -0.066 6.066 21 S 0.239 5.761 22 H 0.086 0.914 23 H 0.248 0.752 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.169 0.831 27 H 0.167 0.833 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 9.098 -17.462 -0.171 19.691 hybrid contribution 1.676 0.444 -0.193 1.745 sum 10.774 -17.018 -0.364 20.145 Atomic orbital electron populations 1.69994 1.06102 1.28649 1.45904 1.25128 0.95223 0.99886 0.93158 0.85857 0.80190 0.80138 0.78026 1.18759 1.20246 1.20238 1.23435 0.97577 0.89617 1.57970 0.87426 1.83519 0.98143 0.95539 1.80978 1.32000 1.02511 0.96533 1.08082 1.71341 0.96832 1.22003 1.20819 1.71028 1.28974 0.93942 1.22271 1.26272 0.90332 0.91129 1.05067 1.43318 1.03590 1.03443 1.83824 1.19520 0.78961 0.87465 1.04359 1.22390 1.05721 0.95688 0.84357 1.21750 1.04415 0.94618 0.99727 1.21883 1.07244 0.99783 0.94850 1.24131 1.02337 0.87393 0.96237 1.84068 1.62763 1.24815 1.34989 1.85263 1.04366 1.07708 1.78732 0.91440 0.75180 0.89992 0.88537 0.83073 0.83266 0.77965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.96 13.22 55.48 0.73 -23.23 15 2 C 0.08 2.04 5.49 -17.49 -0.10 1.95 15 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 15 4 H -0.26 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.54 -14.81 9.36 30.84 0.29 -14.52 15 8 H 0.11 3.07 6.91 -52.48 -0.36 2.70 15 9 S 0.18 4.56 21.89 -107.50 -2.35 2.21 15 10 C 0.00 -0.10 7.82 52.08 0.41 0.31 15 11 N -0.27 -6.53 10.36 31.30 0.32 -6.21 15 12 N -0.32 -6.85 11.23 30.99 0.35 -6.50 15 13 C 0.25 4.48 8.50 -87.17 -0.74 3.74 15 14 N -0.70 -9.38 5.71 -61.83 -0.35 -9.74 15 15 C 0.22 2.66 6.53 -5.19 -0.03 2.62 15 16 C -0.03 -0.33 6.69 -35.63 -0.24 -0.57 15 17 C -0.18 -1.75 10.81 -39.70 -0.43 -2.18 15 18 C -0.22 -1.77 10.91 -39.70 -0.43 -2.21 15 19 C -0.03 -0.26 12.09 29.41 0.36 0.10 15 20 O -0.17 -1.84 10.65 5.70 0.06 -1.78 15 21 S 0.01 0.10 23.53 -107.50 -2.53 -2.43 15 22 H 0.28 7.02 8.32 -40.82 -0.34 6.68 15 23 H 0.41 4.67 8.59 -40.82 -0.35 4.32 15 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.15 1.24 8.06 -52.49 -0.42 0.82 15 27 H 0.15 0.88 8.06 -52.49 -0.42 0.45 15 28 H 0.20 0.82 8.06 -52.48 -0.42 0.40 15 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -31.01 289.93 -7.30 -38.31 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -1.96 Total: -0.16 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.92 Total: -10.75 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 1.05 Total: -45.67 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: 0.06 Total: -1.78 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -4.88 Total: -0.23 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.01 -7.30 -38.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014302888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.224 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds