Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31723 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48494 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46757 * 299.99821 * 3 2 1 6 6 H 1.48499 * 109.47392 * 59.99678 * 3 2 1 7 7 C 1.38540 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00081 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.76199 * 100.00270 * 179.97438 * 9 7 2 11 11 N 1.30223 * 126.08741 * 359.97433 * 10 9 7 12 12 N 1.26103 * 117.72326 * 179.97438 * 11 10 9 13 13 C 1.30257 * 117.70616 * 0.02562 * 12 11 10 14 14 N 1.38654 * 126.08987 * 180.02562 * 13 12 11 15 15 C 1.46503 * 120.00455 * 0.02562 * 14 13 12 16 16 C 1.50696 * 109.47412 * 179.97438 * 15 14 13 17 17 C 1.34515 * 125.78542 * 90.00131 * 16 15 14 18 18 C 1.41388 * 106.83843 * 179.97438 * 17 16 15 19 19 C 1.34506 * 106.83998 * 359.97438 * 18 17 16 20 20 O 1.34304 * 125.79125 * 269.95896 * 16 15 14 21 21 S 1.76475 * 107.81524 * 0.26025 * 13 12 11 22 22 H 0.96998 * 119.99984 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00314 * 180.02562 * 14 13 12 24 24 H 1.09002 * 109.46978 * 59.99964 * 15 14 13 25 25 H 1.09000 * 109.46760 * 300.00453 * 15 14 13 26 26 H 1.08001 * 126.58408 * 359.70263 * 17 16 15 27 27 H 1.08000 * 126.57885 * 180.02562 * 18 17 16 28 28 H 1.08004 * 125.79242 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2512 1.6178 0.0000 4 1 3.7112 1.3464 -0.0006 5 1 1.8925 2.3964 -1.2125 6 1 1.8925 2.3965 1.2124 7 6 2.0099 -1.1998 0.0005 8 1 3.0900 -1.1998 0.0001 9 16 1.1290 -2.7258 0.0005 10 6 2.4787 -3.8584 0.0005 11 7 3.7428 -3.5453 0.0001 12 7 4.5806 -4.4877 0.0006 13 6 4.1210 -5.7066 0.0012 14 7 4.8813 -6.8661 0.0023 15 6 6.3440 -6.7831 0.0037 16 6 6.9260 -8.1731 0.0054 17 6 7.2309 -8.8996 -1.0849 18 6 7.7475 -10.1324 -0.6243 19 6 7.7279 -10.0854 0.7198 20 8 7.2291 -8.8964 1.0957 21 16 2.3585 -5.6190 -0.0068 22 1 -0.4850 0.8400 -0.0004 23 1 4.4448 -7.7323 0.0023 24 1 6.6768 -6.2492 0.8938 25 1 6.6784 -6.2498 -0.8862 26 1 7.1015 -8.6004 -2.1145 27 1 8.0925 -10.9540 -1.2346 28 1 8.0574 -10.8705 1.3842 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014302888.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = 57.305935 kcal Electronic energy + Delta-G solvation = -16091.992486 eV Core-core repulsion = 13169.390795 eV Total energy + Delta-G solvation = -2922.601690 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.56729 -41.53338 -37.53006 -34.75544 -34.00479 -32.31222 -30.57141 -27.80076 -27.44168 -25.94990 -22.72676 -22.00980 -21.31773 -20.71317 -19.60057 -18.53497 -18.25158 -17.04988 -16.97358 -16.78798 -16.69611 -15.64683 -15.38070 -14.81295 -14.69423 -14.36679 -13.78396 -13.55925 -13.28901 -13.23253 -12.99616 -12.95314 -12.20881 -12.07834 -11.42258 -11.30521 -11.21433 -10.91828 -10.72653 -10.69707 -9.58652 -9.56340 -8.52924 -8.51373 -6.28818 -0.32668 -0.24234 0.30095 0.62048 1.13561 1.38812 1.39094 1.55704 1.62427 1.82886 1.95442 2.13082 2.35688 2.88314 3.04527 3.57329 4.00150 4.09767 4.11091 4.28171 4.34195 4.48919 4.86363 4.98698 5.11297 5.46118 5.54319 5.60602 6.14144 6.20870 6.22723 6.94806 7.93101 8.56178 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.041264 B = 0.003253 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.399567 B = 8604.966245 C = 9095.404575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.033 3.967 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.089 0.911 9 S 0.139 5.861 10 C -0.034 4.034 11 N -0.288 5.288 12 N -0.355 5.355 13 C 0.273 3.727 14 N -0.673 5.673 15 C 0.223 3.777 16 C -0.055 4.055 17 C -0.180 4.180 18 C -0.229 4.229 19 C -0.025 4.025 20 O -0.190 6.190 21 S 0.084 5.916 22 H 0.282 0.718 23 H 0.426 0.574 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.161 0.839 27 H 0.173 0.827 28 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.660 -20.387 -0.588 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.174 4.174 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.709 4.709 8 H 0.107 0.893 9 S 0.372 5.628 10 C -0.424 4.424 11 N -0.129 5.129 12 N -0.201 5.201 13 C -0.106 4.106 14 N -0.317 5.317 15 C 0.098 3.902 16 C -0.105 4.105 17 C -0.200 4.200 18 C -0.248 4.248 19 C -0.092 4.092 20 O -0.087 6.087 21 S 0.319 5.681 22 H 0.091 0.909 23 H 0.265 0.735 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.179 0.821 27 H 0.190 0.810 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.626 -20.053 -0.301 22.697 hybrid contribution 1.459 0.751 -0.153 1.649 sum 12.085 -19.302 -0.454 22.778 Atomic orbital electron populations 1.70053 1.07189 1.29675 1.46804 1.25952 0.96065 1.02811 0.92584 0.84946 0.78256 0.76306 0.78794 1.19573 1.18957 1.18991 1.23459 0.96891 0.91352 1.59239 0.89336 1.83256 0.99432 0.95615 1.84486 1.31767 1.01769 0.99245 1.09617 1.71337 0.97788 1.24191 1.19560 1.71027 1.28551 0.94746 1.25800 1.26658 0.91353 0.91586 1.00974 1.43653 1.04481 1.02622 1.80982 1.19524 0.77515 0.88964 1.04191 1.22049 1.08028 0.95491 0.84963 1.22028 1.03109 0.94944 0.99899 1.22225 1.07299 0.99933 0.95308 1.24950 1.00414 0.86760 0.97103 1.84053 1.63399 1.25922 1.35325 1.84929 1.03110 1.02820 1.77239 0.90902 0.73489 0.90778 0.88132 0.82107 0.80966 0.74404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.73 13.22 21.60 0.29 -50.44 15 2 C 0.03 1.79 5.49 84.78 0.47 2.26 15 3 Si 1.00 43.71 29.55 68.60 2.03 45.74 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 5 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.56 -32.17 9.36 67.89 0.64 -31.54 15 8 H 0.09 5.28 6.91 -2.91 -0.02 5.26 15 9 S 0.14 7.20 21.89 -56.49 -1.24 5.96 15 10 C -0.03 -1.60 7.82 130.48 1.02 -0.58 15 11 N -0.29 -14.26 10.36 -54.89 -0.57 -14.83 15 12 N -0.35 -15.18 11.23 -55.88 -0.63 -15.81 15 13 C 0.27 9.29 8.50 179.14 1.52 10.81 15 14 N -0.67 -16.52 5.71 -349.52 -1.99 -18.52 15 15 C 0.22 4.95 6.53 85.63 0.56 5.51 15 16 C -0.06 -1.06 6.69 24.83 0.17 -0.89 15 17 C -0.18 -2.90 10.81 22.19 0.24 -2.66 15 18 C -0.23 -2.92 10.91 22.19 0.24 -2.68 15 19 C -0.02 -0.30 12.09 66.97 0.81 0.50 15 20 O -0.19 -3.63 10.65 -2.51 -0.03 -3.66 15 21 S 0.08 2.93 23.53 -56.49 -1.33 1.60 15 22 H 0.28 14.55 8.32 -92.71 -0.77 13.78 15 23 H 0.43 8.28 8.59 -92.71 -0.80 7.49 15 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.16 2.19 8.06 -2.91 -0.02 2.17 15 27 H 0.17 1.33 8.06 -2.91 -0.02 1.31 15 28 H 0.24 0.89 8.06 -2.91 -0.02 0.87 15 Total: -1.00 -68.98 289.93 2.61 -66.36 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 0.42 Total: 2.86 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 5.66 Total: -19.27 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -2.91 Total: -99.59 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.03 Total: -3.66 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 10.12 SS G_CDS: -2.57 Total: 7.56 kcal Total: -68.98 2.61 -66.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014302888.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.669 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds