Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76196 * 102.99992 * 2 1 4 4 C 1.39109 * 120.00807 * 359.97438 * 3 2 1 5 5 C 1.38197 * 120.23656 * 180.02562 * 4 3 2 6 6 C 1.38013 * 120.24523 * 359.97438 * 5 4 3 7 7 N 1.48018 * 119.99592 * 179.97438 * 6 5 4 8 8 O 1.31697 * 120.00433 * 6.64685 * 7 6 5 9 9 O 1.31699 * 119.99724 * 186.63690 * 7 6 5 10 10 C 1.39694 * 120.00240 * 0.02562 * 6 5 4 11 11 C 1.47660 * 120.11544 * 179.97438 * 10 6 5 12 12 O 1.21438 * 119.99809 * 56.47447 * 11 10 6 13 13 O 1.35053 * 120.00219 * 236.47651 * 11 10 6 14 14 C 1.22530 * 116.99479 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00542 * 0.02562 * 14 13 11 16 16 C 1.46578 * 119.98995 * 179.97438 * 14 13 11 17 17 N 1.29381 * 120.00756 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99635 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46661 * 60.00625 * 18 16 14 20 20 H 1.48503 * 109.47202 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47354 * 300.00540 * 18 16 14 22 22 C 1.38681 * 120.00179 * 180.28651 * 3 2 1 23 23 H 1.09002 * 109.47096 * 60.00074 * 1 2 3 24 24 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47155 * 300.00096 * 1 2 3 26 26 H 1.08002 * 119.87771 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.88197 * 179.97438 * 5 4 3 28 28 H 0.97001 * 120.00458 * 180.02562 * 17 16 14 29 29 H 1.07991 * 120.12389 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1931 2.6657 -0.0005 5 6 1.4986 4.0134 -0.0011 6 6 2.8151 4.4279 -0.0005 7 7 3.1360 5.8728 -0.0017 8 8 2.1728 6.7615 0.1288 9 8 4.3849 6.2698 -0.1330 10 6 3.8446 3.4837 0.0000 11 6 5.2540 3.9243 0.0000 12 8 5.6600 4.6602 0.8765 13 8 6.0914 3.5088 -0.9747 14 6 7.2485 3.9083 -0.9214 15 1 7.5578 4.5621 -0.1195 16 6 8.2133 3.4976 -1.9457 17 7 7.8430 2.7139 -2.9062 18 14 9.9773 4.1070 -1.8650 19 1 10.5965 3.6629 -0.5904 20 1 10.7454 3.5524 -3.0085 21 1 9.9922 5.5904 -1.9322 22 6 3.5366 2.1223 -0.0060 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.1609 2.3478 -0.0005 27 1 0.7043 4.7452 -0.0019 28 1 8.4816 2.4418 -3.5838 29 1 4.3280 1.3876 -0.0111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016195754.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 8.807494 kcal Electronic energy + Delta-G solvation = -19546.256279 eV Core-core repulsion = 16146.505916 eV Total energy + Delta-G solvation = -3399.750363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.65865 -39.32758 -37.28432 -35.75952 -33.31141 -33.21586 -31.65513 -31.34749 -29.18597 -26.65782 -25.72265 -23.52184 -22.10403 -20.93421 -18.67988 -18.40263 -17.64724 -17.12510 -16.52187 -15.48719 -15.18608 -15.10342 -15.05346 -14.80627 -14.49822 -14.12715 -14.03962 -13.25677 -13.04754 -12.77466 -12.47134 -12.22456 -11.78378 -11.58847 -11.03010 -10.84401 -10.47058 -10.32500 -10.28625 -9.96907 -9.90586 -9.66202 -9.33469 -9.19522 -8.92004 -7.63150 -7.38667 -3.98878 -0.28184 1.04057 1.27294 1.54840 2.05941 2.20276 2.73512 2.81817 2.85649 3.17374 3.45038 3.63524 4.08525 4.46531 4.72839 4.79319 4.80348 4.83690 5.19578 5.22432 5.38213 5.65846 5.81099 5.90738 6.06891 6.21822 6.43024 6.63081 6.86677 7.28595 7.79843 7.98167 8.60154 9.51012 9.87275 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.005820 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.824681 B = 4809.845171 C = 6236.548730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.091 6.091 3 C -0.059 4.059 4 C -0.151 4.151 5 C -0.034 4.034 6 C 0.006 3.994 7 N -0.011 5.011 8 O -0.279 6.279 9 O -0.151 6.151 10 C 0.007 3.993 11 C 0.345 3.655 12 O -0.527 6.527 13 O -0.132 6.132 14 C -0.282 4.282 15 H 0.113 0.887 16 C 0.030 3.970 17 N -0.761 5.761 18 Si 0.959 3.041 19 H -0.256 1.256 20 H -0.269 1.269 21 H -0.255 1.255 22 C -0.070 4.070 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.151 0.849 28 H 0.299 0.701 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -8.565 0.736 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.152 5.848 3 C -0.173 4.173 4 C -0.176 4.176 5 C -0.055 4.055 6 C -0.088 4.088 7 N 0.436 4.564 8 O -0.438 6.438 9 O -0.340 6.340 10 C 0.000 4.000 11 C 0.200 3.800 12 O -0.427 6.427 13 O -0.032 6.032 14 C -0.364 4.364 15 H 0.130 0.870 16 C -0.190 4.190 17 N -0.391 5.391 18 Si 0.779 3.221 19 H -0.180 1.180 20 H -0.194 1.194 21 H -0.179 1.179 22 C -0.095 4.095 23 H 0.106 0.894 24 H 0.128 0.872 25 H 0.105 0.895 26 H 0.157 0.843 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.345 -10.008 0.773 13.054 hybrid contribution -0.112 1.784 -0.074 1.789 sum -8.457 -8.225 0.699 11.818 Atomic orbital electron populations 1.23749 0.95007 1.07254 1.05977 1.85631 1.06010 1.01728 1.91437 1.21850 0.96291 0.97345 1.01806 1.20949 0.98691 0.91295 1.06661 1.20664 0.93991 0.96502 0.94354 1.19986 0.94327 0.78306 1.16156 1.49927 1.02585 1.03319 1.00566 1.96131 1.38095 1.47949 1.61590 1.96341 0.97916 1.86678 1.53060 1.18623 0.91215 0.91905 0.98222 1.19903 0.85517 0.87877 0.86750 1.90679 1.74583 1.39122 1.38342 1.80697 1.20335 1.55696 1.46452 1.21649 0.83667 1.22718 1.08326 0.86982 1.27475 1.01994 0.96042 0.93503 1.68912 1.38834 1.22591 1.08788 0.85444 0.76608 0.80556 0.79456 1.18038 1.19361 1.17868 1.20857 0.94926 0.93834 0.99877 0.89423 0.87218 0.89485 0.84323 0.83133 0.88843 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.15 101.05 0.92 -0.17 15 2 S -0.09 -1.07 22.56 -107.50 -2.43 -3.49 15 3 C -0.06 -0.87 6.11 -39.09 -0.24 -1.11 15 4 C -0.15 -2.05 9.36 -39.27 -0.37 -2.41 15 5 C -0.03 -0.56 9.56 -39.68 -0.38 -0.94 15 6 C 0.01 0.12 6.89 -79.49 -0.55 -0.43 15 7 N -0.01 -0.26 4.98 34.19 0.17 -0.09 15 8 O -0.28 -6.73 19.16 -31.57 -0.60 -7.33 15 9 O -0.15 -4.20 15.59 -39.87 -0.62 -4.82 15 10 C 0.01 0.15 5.75 -105.01 -0.60 -0.46 15 11 C 0.34 8.97 5.74 34.58 0.20 9.17 15 12 O -0.53 -15.09 13.85 -27.25 -0.38 -15.46 15 13 O -0.13 -3.52 9.30 -1.83 -0.02 -3.54 15 14 C -0.28 -7.37 9.62 34.09 0.33 -7.04 15 15 H 0.11 2.99 6.70 -52.49 -0.35 2.64 15 16 C 0.03 0.69 5.69 -15.22 -0.09 0.60 15 17 N -0.76 -18.06 13.66 55.98 0.76 -17.30 15 18 Si 0.96 17.43 29.64 -169.99 -5.04 12.39 15 19 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 20 H -0.27 -4.56 7.11 56.52 0.40 -4.15 15 21 H -0.25 -4.67 7.11 56.52 0.40 -4.27 15 22 C -0.07 -1.27 9.53 -38.92 -0.37 -1.64 15 23 H 0.09 0.57 7.74 -51.92 -0.40 0.17 15 24 H 0.11 0.59 8.14 -51.92 -0.42 0.17 15 25 H 0.09 0.56 7.74 -51.93 -0.40 0.16 15 26 H 0.14 1.33 5.86 -52.49 -0.31 1.02 15 27 H 0.15 2.17 7.58 -52.49 -0.40 1.78 15 28 H 0.30 6.20 8.26 -40.82 -0.34 5.87 15 29 H 0.15 2.60 8.06 -52.49 -0.42 2.17 15 LS Contribution 287.55 15.07 4.33 4.33 Total: -1.00 -31.56 287.55 -6.80 -38.36 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -1.84 Total: 1.39 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.14 Total: -4.43 kcal Atomic # 7 Polarization: -18.32 SS G_CDS: 0.93 Total: -17.39 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.62 Total: -31.16 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.04 Total: 12.39 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.43 Total: -3.49 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.56 -6.80 -38.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016195754.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.167 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds