Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76196 * 102.99992 * 2 1 4 4 C 1.39109 * 120.00807 * 359.97438 * 3 2 1 5 5 C 1.38197 * 120.23656 * 180.02562 * 4 3 2 6 6 C 1.38013 * 120.24523 * 359.97438 * 5 4 3 7 7 N 1.48018 * 119.99592 * 179.97438 * 6 5 4 8 8 O 1.31697 * 120.00433 * 6.64685 * 7 6 5 9 9 O 1.31699 * 119.99724 * 186.63690 * 7 6 5 10 10 C 1.39694 * 120.00240 * 0.02562 * 6 5 4 11 11 C 1.47660 * 120.11544 * 179.97438 * 10 6 5 12 12 O 1.21438 * 119.99809 * 56.47447 * 11 10 6 13 13 O 1.35053 * 120.00219 * 236.47651 * 11 10 6 14 14 C 1.22530 * 116.99479 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00542 * 0.02562 * 14 13 11 16 16 C 1.46578 * 119.98995 * 179.97438 * 14 13 11 17 17 N 1.29381 * 120.00756 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99635 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46661 * 60.00625 * 18 16 14 20 20 H 1.48503 * 109.47202 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47354 * 300.00540 * 18 16 14 22 22 C 1.38681 * 120.00179 * 180.28651 * 3 2 1 23 23 H 1.09002 * 109.47096 * 60.00074 * 1 2 3 24 24 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47155 * 300.00096 * 1 2 3 26 26 H 1.08002 * 119.87771 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.88197 * 179.97438 * 5 4 3 28 28 H 0.97001 * 120.00458 * 180.02562 * 17 16 14 29 29 H 1.07991 * 120.12389 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1931 2.6657 -0.0005 5 6 1.4986 4.0134 -0.0011 6 6 2.8151 4.4279 -0.0005 7 7 3.1360 5.8728 -0.0017 8 8 2.1728 6.7615 0.1288 9 8 4.3849 6.2698 -0.1330 10 6 3.8446 3.4837 0.0000 11 6 5.2540 3.9243 0.0000 12 8 5.6600 4.6602 0.8765 13 8 6.0914 3.5088 -0.9747 14 6 7.2485 3.9083 -0.9214 15 1 7.5578 4.5621 -0.1195 16 6 8.2133 3.4976 -1.9457 17 7 7.8430 2.7139 -2.9062 18 14 9.9773 4.1070 -1.8650 19 1 10.5965 3.6629 -0.5904 20 1 10.7454 3.5524 -3.0085 21 1 9.9922 5.5904 -1.9322 22 6 3.5366 2.1223 -0.0060 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.1609 2.3478 -0.0005 27 1 0.7043 4.7452 -0.0019 28 1 8.4816 2.4418 -3.5838 29 1 4.3280 1.3876 -0.0111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016195754.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = -11.389319 kcal Electronic energy + Delta-G solvation = -19547.132079 eV Core-core repulsion = 16146.505916 eV Total energy + Delta-G solvation = -3400.626162 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.36421 -41.04271 -39.27788 -37.69619 -35.43665 -34.77076 -33.26757 -32.97638 -29.88029 -28.43443 -27.48628 -25.10219 -23.83029 -22.58104 -20.40882 -20.10289 -19.47340 -18.99261 -18.05323 -17.27623 -17.07867 -16.76868 -16.44699 -16.22553 -16.05332 -15.60768 -14.91874 -14.77076 -14.07519 -13.97874 -13.94448 -13.47975 -13.42060 -13.06978 -12.68446 -12.50376 -12.18238 -12.07793 -11.93909 -11.73973 -11.43915 -11.38120 -11.10868 -10.94264 -10.56403 -8.90176 -8.71016 -6.02305 -1.99968 -0.44710 -0.17945 0.01854 0.25417 1.12465 1.29265 1.29713 1.42427 1.59063 1.90247 2.08760 2.42341 2.77941 3.14908 3.49247 3.56768 3.67024 4.17939 4.20062 4.34629 4.36202 4.47425 4.53118 4.62486 4.69921 4.93829 4.95057 5.13170 5.62653 5.65720 6.46209 6.77025 7.89617 8.30840 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.005820 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.824681 B = 4809.845171 C = 6236.548730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.079 6.079 3 C -0.027 4.027 4 C -0.114 4.114 5 C -0.009 4.009 6 C -0.022 4.022 7 N -0.014 5.014 8 O -0.159 6.159 9 O -0.248 6.248 10 C -0.001 4.001 11 C 0.345 3.655 12 O -0.569 6.569 13 O -0.156 6.156 14 C -0.422 4.422 15 H 0.072 0.928 16 C 0.010 3.990 17 N -0.833 5.833 18 Si 1.019 2.981 19 H -0.256 1.256 20 H -0.242 1.242 21 H -0.264 1.264 22 C -0.086 4.086 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.110 0.890 26 H 0.207 0.793 27 H 0.195 0.805 28 H 0.303 0.697 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 -10.283 1.749 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.168 5.832 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.031 4.031 6 C -0.113 4.113 7 N 0.452 4.548 8 O -0.359 6.359 9 O -0.419 6.419 10 C -0.007 4.007 11 C 0.199 3.801 12 O -0.471 6.471 13 O -0.058 6.058 14 C -0.501 4.501 15 H 0.090 0.910 16 C -0.202 4.202 17 N -0.465 5.465 18 Si 0.836 3.164 19 H -0.180 1.180 20 H -0.165 1.165 21 H -0.189 1.189 22 C -0.111 4.111 23 H 0.128 0.872 24 H 0.154 0.846 25 H 0.129 0.871 26 H 0.224 0.776 27 H 0.212 0.788 28 H 0.115 0.885 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.434 -11.989 1.706 20.414 hybrid contribution 0.640 2.278 0.119 2.369 sum -15.794 -9.712 1.825 18.631 Atomic orbital electron populations 1.24127 0.89848 1.09877 1.08162 1.86129 1.11393 0.97247 1.88465 1.22461 0.94913 1.01038 0.95751 1.21799 1.01227 0.89256 1.01561 1.21354 0.91763 0.98927 0.91034 1.20637 0.96486 0.75862 1.18358 1.50635 1.02519 1.05146 0.96517 1.96073 1.37526 1.49174 1.53161 1.96496 0.98077 1.87371 1.59935 1.18902 0.89555 0.94241 0.97975 1.20832 0.87406 0.86633 0.85247 1.90592 1.76720 1.39992 1.39829 1.80587 1.21004 1.58707 1.45480 1.20946 0.85464 1.30848 1.12796 0.91041 1.28192 1.04568 0.95112 0.92331 1.68920 1.40011 1.26779 1.10796 0.84698 0.72434 0.79251 0.80064 1.17981 1.16497 1.18902 1.20943 0.97350 0.91956 1.00838 0.87236 0.84614 0.87083 0.77594 0.78814 0.88499 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.15 113.37 1.04 0.36 15 2 S -0.08 -1.31 22.56 -56.49 -1.27 -2.58 15 3 C -0.03 -0.63 6.11 22.58 0.14 -0.49 15 4 C -0.11 -1.99 9.36 22.47 0.21 -1.78 15 5 C -0.01 -0.23 9.56 22.21 0.21 -0.02 15 6 C -0.02 -0.87 6.89 36.67 0.25 -0.62 15 7 N -0.01 -0.65 4.98 -45.75 -0.23 -0.88 15 8 O -0.16 -6.65 19.16 3.52 0.07 -6.58 15 9 O -0.25 -14.68 15.59 11.46 0.18 -14.50 15 10 C 0.00 -0.06 5.75 -20.11 -0.12 -0.18 15 11 C 0.34 20.07 5.74 70.31 0.40 20.47 15 12 O -0.57 -36.73 13.85 27.71 0.38 -36.35 15 13 O -0.16 -9.72 9.30 82.18 0.76 -8.96 15 14 C -0.42 -26.51 9.62 70.00 0.67 -25.84 15 15 H 0.07 4.75 6.70 -2.92 -0.02 4.73 15 16 C 0.01 0.56 5.69 87.23 0.50 1.06 15 17 N -0.83 -45.87 13.66 23.21 0.32 -45.55 15 18 Si 1.02 41.89 29.64 68.60 2.03 43.92 15 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 20 H -0.24 -8.61 7.11 99.48 0.71 -7.91 15 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 22 C -0.09 -3.00 9.53 22.70 0.22 -2.79 15 23 H 0.11 0.21 7.74 -2.39 -0.02 0.19 15 24 H 0.14 0.18 8.14 -2.39 -0.02 0.16 15 25 H 0.11 0.16 7.74 -2.39 -0.02 0.14 15 26 H 0.21 1.20 5.86 -2.91 -0.02 1.18 15 27 H 0.19 3.40 7.58 -2.91 -0.02 3.38 15 28 H 0.30 14.52 8.26 -92.71 -0.77 13.76 15 29 H 0.15 5.28 8.06 -2.92 -0.02 5.26 15 Total: -1.00 -87.12 287.55 6.98 -80.14 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.22 Total: 1.16 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.52 Total: -9.83 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.09 Total: -46.43 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: 1.39 Total: -66.38 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -1.27 Total: -2.58 kcal Total: -87.12 6.98 -80.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016195754.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.748 kcal (2) G-P(sol) polarization free energy of solvation -87.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds