Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 110.99598 * 2 1 4 4 C 1.50696 * 109.46834 * 66.04880 * 3 2 1 5 5 H 1.08004 * 120.00571 * 359.97438 * 4 3 2 6 6 C 1.37888 * 119.99656 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00109 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99815 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47107 * 90.00486 * 8 6 4 10 10 H 1.48505 * 109.46753 * 210.00301 * 8 6 4 11 11 H 1.48504 * 109.47270 * 330.00149 * 8 6 4 12 12 C 1.46896 * 110.99916 * 236.04700 * 2 1 3 13 13 C 1.50700 * 109.47202 * 293.94913 * 12 2 1 14 14 C 1.38259 * 119.99617 * 270.23706 * 13 12 2 15 15 C 1.38220 * 120.02067 * 180.27942 * 14 13 12 16 16 C 1.38238 * 120.00764 * 359.48336 * 15 14 13 17 17 C 1.38305 * 119.99297 * 0.26296 * 16 15 14 18 18 Br 1.89094 * 120.01387 * 179.97438 * 17 16 15 19 19 C 1.38191 * 119.99322 * 90.00410 * 13 12 2 20 20 H 1.09005 * 109.46709 * 183.95550 * 1 2 3 21 21 H 1.08999 * 109.47086 * 303.95079 * 1 2 3 22 22 H 1.09001 * 109.47176 * 63.95241 * 1 2 3 23 23 H 1.08997 * 109.46383 * 186.04106 * 3 2 1 24 24 H 1.08993 * 109.47110 * 306.04692 * 3 2 1 25 25 H 0.96993 * 120.00227 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46491 * 173.95049 * 12 2 1 27 27 H 1.09001 * 109.47203 * 53.95236 * 12 2 1 28 28 H 1.07997 * 119.99226 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.99998 * 179.76945 * 15 14 13 30 30 H 1.08007 * 120.00835 * 180.23480 * 16 15 14 31 31 H 1.08002 * 120.00579 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0266 3.3496 1.5285 7 7 1.7134 3.9394 2.6614 8 14 2.9997 4.2763 0.2309 9 1 2.0630 4.9799 -0.6816 10 1 3.8860 5.2680 0.8913 11 1 3.8237 3.3177 -0.5485 12 6 1.9954 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4919 -3.0706 -0.2962 15 6 2.1664 -4.4059 -0.1498 16 6 0.9808 -4.8897 -0.6706 17 6 0.1228 -4.0384 -1.3430 18 35 -1.4989 -4.6996 -2.0562 19 6 0.4516 -2.7031 -1.4938 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3633 0.5739 0.8525 22 1 -0.3633 0.4513 -0.9233 23 1 3.0796 1.3444 -0.1082 24 1 1.5610 1.9274 -0.8308 25 1 1.9879 4.8555 2.8234 26 1 3.0797 -0.6609 -1.1756 27 1 1.5611 -0.3872 -2.0628 28 1 3.4163 -2.6922 0.1145 29 1 2.8363 -5.0706 0.3755 30 1 0.7247 -5.9323 -0.5529 31 1 -0.2182 -2.0379 -2.0187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019834110.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = 12.961152 kcal Electronic energy + Delta-G solvation = -14341.604535 eV Core-core repulsion = 11861.395991 eV Total energy + Delta-G solvation = -2480.208544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51554 -38.08978 -34.76611 -33.41387 -32.54006 -30.27749 -29.74905 -28.10901 -25.46487 -23.37207 -22.62919 -21.54743 -18.99563 -17.67183 -16.73606 -16.64097 -16.24646 -15.90140 -15.60383 -14.76882 -14.46871 -14.39692 -14.07080 -13.72506 -13.49023 -12.98165 -12.67860 -12.62962 -12.45537 -12.01272 -11.84617 -11.81417 -11.73352 -11.44871 -11.22954 -10.78783 -9.87132 -9.61783 -9.05652 -8.27464 -6.31286 0.16922 0.31818 0.64303 1.36060 1.37675 1.48494 2.35322 2.61407 3.05834 3.40304 3.75674 3.88217 4.09851 4.29422 4.37716 4.42121 4.53758 4.59486 4.66909 4.80032 4.90059 4.99144 5.00543 5.15881 5.23071 5.39880 5.51961 5.62694 5.86999 5.97200 6.30446 6.62444 6.75089 7.32276 8.89272 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.003948 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.107754 B = 7090.257146 C = 7412.773470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.171 3.829 4 C -0.518 4.518 5 H 0.036 0.964 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.948 3.052 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.245 1.245 12 C 0.088 3.912 13 C -0.074 4.074 14 C -0.093 4.093 15 C -0.111 4.111 16 C -0.097 4.097 17 C -0.101 4.101 18 Br -0.053 7.053 19 C -0.094 4.094 20 H 0.070 0.930 21 H 0.047 0.953 22 H 0.022 0.978 23 H 0.035 0.965 24 H -0.011 1.011 25 H 0.267 0.733 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.136 0.864 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -20.399 -12.461 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.054 0.946 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.771 3.229 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.169 1.169 12 C -0.039 4.039 13 C -0.076 4.076 14 C -0.111 4.111 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.181 4.181 18 Br 0.032 6.968 19 C -0.114 4.114 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.040 0.960 23 H 0.053 0.947 24 H 0.006 0.994 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.168 0.832 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.370 -20.708 -12.210 24.156 hybrid contribution 0.171 1.479 -0.553 1.588 sum -2.199 -19.229 -12.763 23.184 Atomic orbital electron populations 1.22207 0.87775 1.00899 0.99818 1.61873 1.08147 1.14766 1.41681 1.19985 0.95547 0.85427 0.94646 1.21260 1.34914 0.97534 1.01874 0.94557 1.25856 0.96968 0.98382 0.97725 1.70049 1.48584 1.13883 1.26453 0.85705 0.79229 0.78776 0.79157 1.19437 1.20741 1.16874 1.21134 1.00974 0.89770 0.92021 1.19815 0.94617 0.95145 0.98013 1.21419 0.99968 0.93689 0.96071 1.21469 0.96774 0.95435 0.99227 1.21375 0.93577 1.00309 0.96388 1.21849 0.94902 0.95943 1.05362 1.96681 1.28455 1.87122 1.84508 1.21053 0.96586 0.93929 0.99878 0.91173 0.93401 0.95952 0.94652 0.99377 0.92425 0.89367 0.93870 0.84628 0.82299 0.83155 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 8.95 127.69 1.14 2.75 16 2 N -0.54 -22.06 4.74 -931.65 -4.42 -26.48 16 3 C 0.17 8.05 3.79 85.55 0.32 8.37 16 4 C -0.52 -29.88 9.01 25.60 0.23 -29.65 16 5 H 0.04 2.36 7.37 -2.91 -0.02 2.33 16 6 C 0.01 0.46 5.47 84.66 0.46 0.92 16 7 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 8 Si 0.95 43.45 27.47 68.60 1.88 45.33 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 12 C 0.09 2.79 5.12 85.56 0.44 3.23 16 13 C -0.07 -2.05 4.88 -19.87 -0.10 -2.15 16 14 C -0.09 -2.24 9.70 22.27 0.22 -2.03 16 15 C -0.11 -2.16 10.05 22.27 0.22 -1.94 16 16 C -0.10 -1.93 9.79 22.29 0.22 -1.71 16 17 C -0.10 -2.35 6.22 22.31 0.14 -2.21 16 18 Br -0.05 -1.10 33.70 -20.37 -0.69 -1.79 16 19 C -0.09 -2.44 7.71 22.29 0.17 -2.26 16 20 H 0.07 2.42 6.17 -2.38 -0.01 2.40 16 21 H 0.05 2.15 6.76 -2.39 -0.02 2.13 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.04 1.62 6.99 -2.39 -0.02 1.61 16 24 H -0.01 -0.53 7.55 -2.39 -0.02 -0.55 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.09 2.61 7.88 -2.39 -0.02 2.59 16 27 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 28 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 29 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 31 H 0.13 3.22 8.03 -2.91 -0.02 3.20 16 Total: -1.00 -65.16 280.75 1.60 -63.56 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.06 Total: 5.12 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.47 Total: -26.68 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -4.12 Total: -85.54 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -0.69 Total: -1.79 kcal Total: -65.16 1.60 -63.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019834110.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.520 kcal (2) G-P(sol) polarization free energy of solvation -65.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds