Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 110.99891 * 2 1 4 4 C 1.50696 * 109.47510 * 66.04555 * 3 2 1 5 5 H 1.08002 * 119.99787 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00619 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99779 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00259 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47149 * 60.00009 * 8 6 4 10 10 H 1.48502 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47110 * 299.99993 * 8 6 4 12 12 C 1.46899 * 110.99672 * 236.04536 * 2 1 3 13 13 C 1.50698 * 109.47470 * 293.95020 * 12 2 1 14 14 C 1.38242 * 120.00070 * 104.99822 * 13 12 2 15 15 C 1.38224 * 120.00951 * 179.70212 * 14 13 12 16 16 C 1.38264 * 120.01600 * 0.28256 * 15 14 13 17 17 C 1.38198 * 120.01410 * 0.02562 * 16 15 14 18 18 C 1.38299 * 120.00769 * 285.26009 * 13 12 2 19 19 Br 1.89103 * 120.01247 * 0.04165 * 18 13 12 20 20 H 1.09004 * 109.47061 * 183.95204 * 1 2 3 21 21 H 1.09003 * 109.47190 * 303.95267 * 1 2 3 22 22 H 1.08997 * 109.47161 * 63.95421 * 1 2 3 23 23 H 1.08998 * 109.47007 * 186.04797 * 3 2 1 24 24 H 1.09000 * 109.47390 * 306.04414 * 3 2 1 25 25 H 0.96997 * 120.00378 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46772 * 173.95513 * 12 2 1 27 27 H 1.09000 * 109.47321 * 53.95923 * 12 2 1 28 28 H 1.08002 * 119.99955 * 359.97438 * 14 13 12 29 29 H 1.07991 * 119.99277 * 180.25949 * 15 14 13 30 30 H 1.08005 * 119.99203 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.00771 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0267 3.3495 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.1757 3.4297 4.2699 10 1 2.1150 5.5732 3.1381 11 1 0.1058 4.2229 3.2866 12 6 1.9954 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 0.6297 -2.7753 -1.7401 15 6 0.3049 -4.1108 -1.5935 16 6 0.9834 -4.8909 -0.6754 17 6 1.9862 -4.3355 0.0965 18 6 2.3119 -2.9989 -0.0504 19 35 3.6841 -2.2384 1.0055 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3634 0.5740 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3443 -0.1083 24 1 1.5611 1.9273 -0.8309 25 1 2.9858 4.9182 0.7765 26 1 3.0797 -0.6611 -1.1756 27 1 1.5611 -0.3872 -2.0628 28 1 0.0994 -2.1663 -2.4572 29 1 -0.4791 -4.5450 -2.1959 30 1 0.7290 -5.9343 -0.5609 31 1 2.5163 -4.9450 0.8133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019834153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 13.122157 kcal Electronic energy + Delta-G solvation = -14590.383955 eV Core-core repulsion = 12110.182393 eV Total energy + Delta-G solvation = -2480.201563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44761 -37.96082 -34.76898 -33.21292 -32.49647 -30.12006 -29.10649 -27.99640 -25.60402 -23.34228 -22.84091 -21.50941 -18.52626 -17.47621 -16.83333 -16.69010 -16.03810 -15.94429 -15.37643 -14.93730 -14.31726 -13.99651 -13.98534 -13.58337 -13.29856 -12.86419 -12.67423 -12.59046 -12.38730 -12.16597 -12.01646 -11.76288 -11.62957 -11.28996 -10.83155 -10.59026 -9.80487 -9.51600 -8.94876 -8.17711 -6.26766 0.23337 0.37310 0.93121 1.40863 1.44179 1.51815 2.41360 2.70834 3.14824 3.45891 3.80495 3.90509 4.17355 4.31906 4.47527 4.50375 4.60385 4.66389 4.75368 4.83261 5.03630 5.08656 5.19991 5.30921 5.37053 5.49263 5.53437 5.67180 5.96015 6.07696 6.35914 6.63252 6.88642 7.42125 8.93123 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.006164 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.993502 B = 4541.196438 C = 5167.279993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.529 5.529 3 C 0.214 3.786 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.935 5.935 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.087 3.913 13 C -0.062 4.062 14 C -0.117 4.117 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.087 4.087 19 Br -0.061 7.061 20 H 0.069 0.931 21 H 0.056 0.944 22 H 0.013 0.987 23 H 0.003 0.997 24 H -0.038 1.038 25 H 0.263 0.737 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 -19.172 -3.416 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.252 5.252 3 C 0.088 3.912 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.576 5.576 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.192 1.192 12 C -0.041 4.041 13 C -0.064 4.064 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.167 4.167 19 Br 0.025 6.975 20 H 0.087 0.913 21 H 0.075 0.925 22 H 0.031 0.969 23 H 0.021 0.979 24 H -0.021 1.021 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.288 -18.925 -2.617 19.242 hybrid contribution -0.335 1.290 -0.313 1.369 sum -2.623 -17.635 -2.930 18.068 Atomic orbital electron populations 1.22168 0.87798 1.00677 0.99735 1.62020 1.07774 1.14968 1.40479 1.19316 0.93592 0.83413 0.94894 1.21386 1.34587 0.97251 1.02255 0.92087 1.25858 0.95130 0.98062 1.00475 1.70077 1.39490 1.11833 1.36171 0.85496 0.78859 0.77187 0.79439 1.19629 1.20841 1.19161 1.21076 1.00125 0.90316 0.92586 1.19756 0.96331 0.94538 0.95805 1.21289 0.96239 0.96625 0.99504 1.21590 0.99621 0.92815 0.97947 1.21524 0.94856 1.01570 0.95222 1.21371 0.98455 0.92208 1.00210 1.21879 0.99182 0.96298 0.99373 1.96728 1.47182 1.85164 1.68421 0.91284 0.92531 0.96860 0.97934 1.02080 0.92784 0.91323 0.94476 0.84607 0.82288 0.81987 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.77 9.16 127.69 1.17 2.93 16 2 N -0.53 -23.39 4.48 -931.67 -4.17 -27.56 16 3 C 0.21 11.65 4.72 85.56 0.40 12.05 16 4 C -0.52 -29.81 8.46 25.60 0.22 -29.60 16 5 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 6 C 0.00 0.15 5.46 84.65 0.46 0.61 16 7 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 8 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 C 0.09 3.27 4.36 85.56 0.37 3.64 16 13 C -0.06 -1.92 4.42 -19.85 -0.09 -2.01 16 14 C -0.12 -2.82 9.12 22.27 0.20 -2.62 16 15 C -0.10 -1.83 10.05 22.27 0.22 -1.61 16 16 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 17 C -0.10 -2.38 9.79 22.29 0.22 -2.16 16 18 C -0.09 -2.64 6.22 22.31 0.14 -2.50 16 19 Br -0.06 -2.09 31.92 -20.37 -0.65 -2.74 16 20 H 0.07 2.37 6.88 -2.38 -0.02 2.35 16 21 H 0.06 2.43 6.76 -2.39 -0.02 2.41 16 22 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.00 0.15 7.93 -2.39 -0.02 0.13 16 24 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.07 2.75 7.21 -2.39 -0.02 2.74 16 27 H 0.04 1.34 7.93 -2.39 -0.02 1.32 16 28 H 0.14 2.91 8.00 -2.91 -0.02 2.89 16 29 H 0.16 1.76 8.06 -2.92 -0.02 1.74 16 30 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -66.19 282.92 2.14 -64.04 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: 1.11 Total: -1.02 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 3.54 Total: -23.04 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.89 Total: -84.47 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 35 Polarization: -2.09 SS G_CDS: -0.65 Total: -2.74 kcal Total: -66.19 2.14 -64.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019834153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.166 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds