Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38236 * 119.99471 * 269.72558 * 13 12 2 15 15 C 1.38221 * 120.01393 * 179.76841 * 14 13 12 16 16 C 1.38322 * 119.98715 * 0.50885 * 15 14 13 17 17 Br 1.89104 * 120.01279 * 179.72286 * 16 15 14 18 18 C 1.38329 * 119.98089 * 359.74536 * 16 15 14 19 19 C 1.38219 * 119.98658 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 21 21 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 23 23 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 24 24 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 25 25 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 27 27 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 28 28 H 1.08005 * 119.99307 * 0.02562 * 14 13 12 29 29 H 1.07992 * 120.00638 * 180.23456 * 15 14 13 30 30 H 1.07998 * 120.00839 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.99256 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5736 3.1378 11 1 0.1045 4.2237 3.2849 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4968 -3.0727 -0.3055 15 6 2.1662 -4.4057 -0.1499 16 6 0.9797 -4.8892 -0.6713 17 35 0.5304 -6.7145 -0.4657 18 6 0.1221 -4.0371 -1.3436 19 6 0.4514 -2.7032 -1.4945 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9863 4.9181 0.7769 26 1 1.5612 -0.3872 -2.0627 27 1 3.0798 -0.6611 -1.1756 28 1 3.4251 -2.6960 0.0980 29 1 2.8362 -5.0707 0.3747 30 1 -0.8042 -4.4142 -1.7512 31 1 -0.2180 -2.0380 -2.0197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019834204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = 26.404756 kcal Electronic energy + Delta-G solvation = -14237.288834 eV Core-core repulsion = 11757.663248 eV Total energy + Delta-G solvation = -2479.625586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41122 -36.44696 -32.98265 -32.05779 -31.02173 -29.81518 -27.14323 -26.42234 -23.75851 -22.69688 -21.25362 -20.16229 -16.68303 -16.20782 -15.48961 -15.12655 -14.90219 -14.31350 -13.82680 -13.50847 -13.42939 -12.99831 -12.47072 -11.96147 -11.63965 -11.33149 -11.14734 -11.03427 -10.85921 -10.74538 -10.61279 -10.44311 -10.34060 -9.88767 -9.27798 -8.94524 -8.54309 -8.43681 -7.31329 -6.05512 -4.07056 1.15422 1.37668 1.59829 3.32302 3.36322 3.39403 3.67319 4.41266 4.79758 4.92662 4.97405 5.17165 5.30793 5.38690 5.43922 5.71697 5.77188 6.03430 6.06385 6.17467 6.22915 6.27675 6.32016 6.69948 6.74983 6.88807 7.22302 7.28225 7.75401 8.02337 8.13661 8.48908 9.00180 9.57244 11.05352 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.046163 B = 0.003325 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.396027 B = 8418.204586 C = 8582.813390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.085 3.915 13 C -0.042 4.042 14 C -0.095 4.095 15 C -0.092 4.092 16 C -0.098 4.098 17 Br -0.066 7.066 18 C -0.094 4.094 19 C -0.110 4.110 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.011 0.989 23 H 0.031 0.969 24 H -0.008 1.008 25 H 0.262 0.738 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -20.132 -4.904 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.044 4.044 13 C -0.043 4.043 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.178 4.178 17 Br 0.019 6.981 18 C -0.114 4.114 19 C -0.130 4.130 20 H 0.067 0.933 21 H 0.094 0.906 22 H 0.030 0.970 23 H 0.049 0.951 24 H 0.010 0.990 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.650 -20.839 -4.431 21.616 hybrid contribution -0.396 1.367 0.066 1.425 sum -4.046 -19.473 -4.364 20.362 Atomic orbital electron populations 1.22302 0.88822 0.99802 1.00570 1.62171 1.07152 1.17747 1.38715 1.19764 0.95435 0.81231 0.96791 1.21112 1.34999 0.96919 1.01675 0.91873 1.24985 0.95251 0.97303 0.97015 1.69944 1.38281 1.11538 1.34115 0.86547 0.78720 0.78330 0.83744 1.20127 1.21336 1.20265 1.21118 1.00798 0.88856 0.93583 1.20165 0.93508 0.96185 0.94468 1.21105 1.00333 0.92108 0.97858 1.21074 0.95143 0.96123 0.98882 1.21671 0.99041 0.90532 1.06512 1.96655 1.93687 1.10617 1.97182 1.21010 0.98822 0.93216 0.98307 1.21112 0.96822 0.94623 1.00407 0.93338 0.90646 0.97049 0.95118 0.99012 0.92827 0.94686 0.90156 0.84855 0.85316 0.85438 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.96 60.07 0.54 1.19 16 2 N -0.53 -11.25 4.74 -245.83 -1.17 -12.42 16 3 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 4 C -0.51 -14.13 8.46 -34.44 -0.29 -14.42 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.08 1.46 5.12 -4.98 -0.03 1.43 16 13 C -0.04 -0.63 4.88 -104.62 -0.51 -1.14 16 14 C -0.09 -1.31 9.70 -39.59 -0.38 -1.69 16 15 C -0.09 -1.16 9.79 -39.56 -0.39 -1.55 16 16 C -0.10 -1.22 6.22 -39.52 -0.25 -1.47 16 17 Br -0.07 -0.73 33.70 -68.01 -2.29 -3.02 16 18 C -0.09 -1.15 9.79 -39.55 -0.39 -1.53 16 19 C -0.11 -1.47 7.97 -39.59 -0.32 -1.78 16 20 H 0.05 0.82 6.17 -51.93 -0.32 0.50 16 21 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 23 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 24 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 27 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 28 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.55 8.03 -52.48 -0.42 1.13 16 LS Contribution 284.35 15.07 4.29 4.29 Total: -1.00 -29.04 284.35 -9.54 -38.58 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -3.95 Total: -3.58 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.13 Total: -14.60 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.43 Total: -38.13 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.04 -9.54 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019834204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.988 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds