Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47285 * 59.99070 * 8 6 4 10 10 H 1.48494 * 109.47400 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46709 * 299.99808 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38236 * 119.99471 * 269.72558 * 13 12 2 15 15 C 1.38221 * 120.01393 * 179.76841 * 14 13 12 16 16 C 1.38322 * 119.98715 * 0.50885 * 15 14 13 17 17 Br 1.89104 * 120.01279 * 179.72286 * 16 15 14 18 18 C 1.38329 * 119.98089 * 359.74536 * 16 15 14 19 19 C 1.38219 * 119.98658 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 21 21 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 23 23 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 24 24 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 25 25 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 27 27 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 28 28 H 1.08005 * 119.99307 * 0.02562 * 14 13 12 29 29 H 1.07992 * 120.00638 * 180.23456 * 15 14 13 30 30 H 1.07998 * 120.00839 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.99256 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.1734 3.4304 4.2700 10 1 2.1139 5.5736 3.1378 11 1 0.1045 4.2237 3.2849 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4968 -3.0727 -0.3055 15 6 2.1662 -4.4057 -0.1499 16 6 0.9797 -4.8892 -0.6713 17 35 0.5304 -6.7145 -0.4657 18 6 0.1221 -4.0371 -1.3436 19 6 0.4514 -2.7032 -1.4945 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9863 4.9181 0.7769 26 1 1.5612 -0.3872 -2.0627 27 1 3.0798 -0.6611 -1.1756 28 1 3.4251 -2.6960 0.0980 29 1 2.8362 -5.0707 0.3747 30 1 -0.8042 -4.4142 -1.7512 31 1 -0.2180 -2.0380 -2.0197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019834204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = 9.852337 kcal Electronic energy + Delta-G solvation = -14238.006601 eV Core-core repulsion = 11757.663248 eV Total energy + Delta-G solvation = -2480.343353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50966 -38.02685 -34.83953 -33.40860 -32.02678 -30.98434 -29.05587 -27.84285 -25.48688 -23.72335 -22.74500 -21.60140 -18.55350 -17.49635 -16.84741 -16.62096 -16.17816 -15.98138 -15.43806 -14.98116 -14.43326 -14.08704 -14.01210 -13.64764 -13.33941 -12.90476 -12.70754 -12.63546 -12.42806 -12.16772 -12.05308 -11.76029 -11.70115 -11.28204 -11.23885 -10.61058 -9.94857 -9.57696 -9.02264 -8.20224 -6.30281 0.10347 0.37504 0.64769 1.42136 1.44911 1.52904 2.40321 2.61346 3.12516 3.48656 3.79411 3.87601 3.99667 4.24221 4.40236 4.51120 4.58870 4.67368 4.73732 4.80357 5.03429 5.07525 5.16636 5.22244 5.24157 5.32217 5.63237 5.65489 5.85423 6.04089 6.30009 6.59400 6.85293 7.39371 8.90525 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.046163 B = 0.003325 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.396027 B = 8418.204586 C = 8582.813390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.088 3.912 13 C -0.059 4.059 14 C -0.103 4.103 15 C -0.092 4.092 16 C -0.103 4.103 17 Br -0.049 7.049 18 C -0.091 4.091 19 C -0.112 4.112 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.015 0.985 23 H 0.007 0.993 24 H -0.035 1.035 25 H 0.265 0.735 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -21.589 -4.275 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.040 4.040 13 C -0.060 4.060 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.182 4.182 17 Br 0.036 6.964 18 C -0.111 4.111 19 C -0.131 4.131 20 H 0.094 0.906 21 H 0.074 0.926 22 H 0.034 0.966 23 H 0.025 0.975 24 H -0.017 1.017 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.650 -22.326 -3.807 23.121 hybrid contribution -0.090 1.690 -0.182 1.702 sum -4.741 -20.636 -3.989 21.546 Atomic orbital electron populations 1.22255 0.87615 1.01139 0.99865 1.62054 1.08303 1.15182 1.41067 1.19414 0.93875 0.83519 0.95115 1.21432 1.34991 0.97502 1.02403 0.91991 1.25884 0.94980 0.98003 1.00607 1.70068 1.39277 1.11940 1.36178 0.85457 0.78834 0.77197 0.79271 1.19397 1.20816 1.19255 1.21087 1.00411 0.90166 0.92308 1.19965 0.94923 0.94611 0.96523 1.21187 1.00380 0.92763 0.97940 1.21257 0.95550 0.95733 0.98654 1.21903 0.98902 0.91577 1.05862 1.96679 1.93534 1.09069 1.97097 1.21247 0.99496 0.92636 0.97708 1.21221 0.96287 0.95422 1.00181 0.90640 0.92605 0.96650 0.97483 1.01695 0.92644 0.94323 0.90673 0.84827 0.83560 0.83275 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 8.96 127.69 1.14 2.65 16 2 N -0.54 -23.09 4.74 -931.66 -4.42 -27.51 16 3 C 0.21 10.92 4.72 85.56 0.40 11.32 16 4 C -0.53 -29.64 8.46 25.60 0.22 -29.42 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.19 5.46 84.66 0.46 0.65 16 7 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 8 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 C 0.09 3.04 5.12 85.56 0.44 3.48 16 13 C -0.06 -1.70 4.88 -19.87 -0.10 -1.80 16 14 C -0.10 -2.75 9.70 22.27 0.22 -2.53 16 15 C -0.09 -2.13 9.79 22.29 0.22 -1.91 16 16 C -0.10 -2.30 6.22 22.31 0.14 -2.17 16 17 Br -0.05 -0.94 33.70 -20.37 -0.69 -1.63 16 18 C -0.09 -1.99 9.79 22.29 0.22 -1.77 16 19 C -0.11 -2.75 7.97 22.27 0.18 -2.58 16 20 H 0.08 2.44 6.17 -2.39 -0.01 2.43 16 21 H 0.06 2.32 6.76 -2.39 -0.02 2.31 16 22 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.01 0.40 7.93 -2.39 -0.02 0.38 16 24 H -0.03 -1.97 8.12 -2.39 -0.02 -1.99 16 25 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.04 1.30 8.06 -2.39 -0.02 1.28 16 27 H 0.07 2.62 7.87 -2.39 -0.02 2.61 16 28 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 29 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.14 3.05 8.03 -2.91 -0.02 3.03 16 Total: -1.00 -61.72 284.35 1.85 -59.87 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.11 Total: 2.89 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.54 Total: -24.07 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -4.14 Total: -83.11 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -0.69 Total: -1.63 kcal Total: -61.72 1.85 -59.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019834204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.720 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds