Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47100 * 2 1 4 4 N 1.46900 * 109.47298 * 120.00446 * 2 1 3 5 5 C 1.46909 * 110.99653 * 274.99928 * 4 2 1 6 6 C 1.50697 * 109.46778 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00472 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00160 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99351 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00313 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46919 * 90.00015 * 10 8 6 12 12 H 1.48500 * 109.46659 * 209.99941 * 10 8 6 13 13 H 1.48494 * 109.47131 * 329.99688 * 10 8 6 14 14 C 1.50706 * 109.47224 * 240.00056 * 2 1 3 15 15 C 1.38247 * 119.98630 * 99.99715 * 14 2 1 16 16 C 1.38215 * 120.00664 * 179.97438 * 15 14 2 17 17 C 1.38330 * 119.99152 * 0.02894 * 16 15 14 18 18 Br 1.89100 * 120.00875 * 179.97438 * 17 16 15 19 19 C 1.38320 * 119.97711 * 0.27274 * 17 16 15 20 20 C 1.38219 * 119.99023 * 359.42541 * 19 17 16 21 21 H 1.09002 * 109.47284 * 299.99699 * 1 2 3 22 22 H 1.09001 * 109.47070 * 59.99645 * 1 2 3 23 23 H 1.08999 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.00898 * 110.99785 * 38.95090 * 4 2 1 25 25 H 1.08995 * 109.46919 * 299.99883 * 5 4 2 26 26 H 1.09000 * 109.46762 * 60.00299 * 5 4 2 27 27 H 0.96997 * 119.99599 * 179.97438 * 9 8 6 28 28 H 1.07998 * 119.99776 * 0.02562 * 15 14 2 29 29 H 1.07998 * 120.00665 * 180.02562 * 16 15 14 30 30 H 1.08005 * 120.00516 * 179.70850 * 19 17 16 31 31 H 1.08006 * 119.99587 * 180.32216 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5874 -0.5219 3.5559 7 1 2.8371 -1.5699 3.4795 8 6 2.7306 0.1348 4.7598 9 7 2.4270 1.4111 4.8527 10 14 3.3558 -0.7882 6.2587 11 1 4.8367 -0.6951 6.3152 12 1 2.7748 -0.1888 7.4869 13 1 2.9526 -2.2143 6.1656 14 6 2.0324 -0.7104 -1.2305 15 6 2.4587 0.0198 -2.3243 16 6 2.9200 -0.6313 -3.4528 17 6 2.9545 -2.0137 -3.4880 18 35 3.5849 -2.9051 -5.0320 19 6 2.5220 -2.7439 -2.3957 20 6 2.0667 -2.0919 -1.2652 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4496 -1.4980 1.4099 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6162 2.5525 27 1 2.5274 1.8730 5.6997 28 1 2.4320 1.0991 -2.2966 29 1 3.2534 -0.0609 -4.3071 30 1 2.5444 -3.8233 -2.4245 31 1 1.7339 -2.6619 -0.4103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = 16.193041 kcal Electronic energy + Delta-G solvation = -14146.840206 eV Core-core repulsion = 11666.771807 eV Total energy + Delta-G solvation = -2480.068399 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41266 -36.20356 -33.07950 -31.85926 -30.95427 -30.02447 -28.14059 -26.04086 -23.23734 -22.81240 -21.49481 -20.09955 -17.00923 -16.11427 -15.44557 -14.98049 -14.64596 -14.18321 -13.65071 -13.52769 -13.31443 -13.17772 -12.37166 -12.21904 -11.85840 -11.42112 -11.35679 -11.09197 -10.81389 -10.67133 -10.63991 -10.50493 -10.30651 -9.93785 -9.24745 -8.91264 -8.53645 -8.41545 -7.38234 -6.06817 -4.08841 1.22008 1.42997 1.63958 3.30497 3.36429 3.39814 3.74459 4.40148 4.80521 4.95315 4.97685 5.25296 5.29711 5.44305 5.53167 5.57805 5.62795 5.83481 5.97166 6.04919 6.20350 6.27784 6.33133 6.47583 6.79083 6.94195 7.18700 7.36765 7.73753 8.07413 8.30474 8.53474 8.99986 9.56282 11.04215 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.003402 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.890488 B = 8227.470818 C = 8657.056801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 H 0.083 0.917 4 N -0.681 5.681 5 C 0.195 3.805 6 C -0.515 4.515 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.034 4.034 15 C -0.115 4.115 16 C -0.093 4.093 17 C -0.101 4.101 18 Br -0.068 7.068 19 C -0.093 4.093 20 C -0.092 4.092 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.330 0.670 25 H 0.028 0.972 26 H -0.011 1.011 27 H 0.262 0.738 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -6.377 -19.803 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.002 3.998 3 H 0.102 0.898 4 N -0.311 5.311 5 C 0.068 3.932 6 C -0.554 4.554 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.035 4.035 15 C -0.134 4.134 16 C -0.113 4.113 17 C -0.180 4.180 18 Br 0.017 6.983 19 C -0.113 4.113 20 C -0.111 4.111 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.147 0.853 25 H 0.046 0.954 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.303 -6.471 -20.390 21.395 hybrid contribution -0.662 -0.049 1.432 1.578 sum -0.966 -6.520 -18.958 20.071 Atomic orbital electron populations 1.22465 0.96750 1.01945 1.02100 1.20521 0.92301 0.97649 0.89370 0.89837 1.60794 1.55196 1.10507 1.04559 1.19594 0.95419 0.91753 0.86400 1.21170 1.43693 0.96963 0.93548 0.91961 1.24982 0.95570 0.94932 0.99022 1.69960 1.48759 1.09012 1.25982 0.86480 0.79036 0.79857 0.81929 1.20598 1.21299 1.19838 1.20221 0.94722 0.93886 0.94706 1.21048 0.99563 1.00135 0.92697 1.20986 0.99349 0.92213 0.98740 1.21651 1.07689 0.94895 0.93755 1.96645 1.87664 1.78289 1.35726 1.21077 0.98180 0.99886 0.92149 1.21001 0.98799 0.94266 0.97005 0.91709 0.92811 0.92660 0.85292 0.95393 0.99273 0.92883 0.85371 0.85493 0.85437 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.14 37.16 0.34 -2.21 16 2 C 0.11 1.87 2.79 -68.86 -0.19 1.68 16 3 H 0.08 1.45 7.66 -51.93 -0.40 1.06 16 4 N -0.68 -13.79 5.69 -109.22 -0.62 -14.42 16 5 C 0.19 4.92 5.24 -4.97 -0.03 4.89 16 6 C -0.52 -14.30 9.32 -34.44 -0.32 -14.62 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 10 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C -0.03 -0.51 4.96 -104.62 -0.52 -1.03 16 15 C -0.12 -1.52 9.67 -39.59 -0.38 -1.91 16 16 C -0.09 -1.15 9.79 -39.56 -0.39 -1.54 16 17 C -0.10 -1.28 6.22 -39.52 -0.25 -1.53 16 18 Br -0.07 -0.76 33.70 -68.01 -2.29 -3.05 16 19 C -0.09 -1.20 9.79 -39.56 -0.39 -1.59 16 20 C -0.09 -1.29 9.32 -39.59 -0.37 -1.66 16 21 H 0.06 1.04 7.45 -51.93 -0.39 0.66 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 24 H 0.33 6.33 7.81 -39.29 -0.31 6.02 16 25 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 26 H -0.01 -0.28 7.44 -51.93 -0.39 -0.66 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 1.48 8.04 -52.49 -0.42 1.06 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.13 1.81 7.25 -52.48 -0.38 1.43 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -29.00 287.44 -9.39 -38.38 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.93 Total: 2.02 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.59 Total: -18.02 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.11 Total: -40.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.00 -9.39 -38.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.577 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds