Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47100 * 2 1 4 4 N 1.46900 * 109.47298 * 120.00446 * 2 1 3 5 5 C 1.46909 * 110.99653 * 274.99928 * 4 2 1 6 6 C 1.50697 * 109.46778 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00472 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00160 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99351 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00313 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46919 * 90.00015 * 10 8 6 12 12 H 1.48500 * 109.46659 * 209.99941 * 10 8 6 13 13 H 1.48494 * 109.47131 * 329.99688 * 10 8 6 14 14 C 1.50706 * 109.47224 * 240.00056 * 2 1 3 15 15 C 1.38247 * 119.98630 * 99.99715 * 14 2 1 16 16 C 1.38215 * 120.00664 * 179.97438 * 15 14 2 17 17 C 1.38330 * 119.99152 * 0.02894 * 16 15 14 18 18 Br 1.89100 * 120.00875 * 179.97438 * 17 16 15 19 19 C 1.38320 * 119.97711 * 0.27274 * 17 16 15 20 20 C 1.38219 * 119.99023 * 359.42541 * 19 17 16 21 21 H 1.09002 * 109.47284 * 299.99699 * 1 2 3 22 22 H 1.09001 * 109.47070 * 59.99645 * 1 2 3 23 23 H 1.08999 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.00898 * 110.99785 * 38.95090 * 4 2 1 25 25 H 1.08995 * 109.46919 * 299.99883 * 5 4 2 26 26 H 1.09000 * 109.46762 * 60.00299 * 5 4 2 27 27 H 0.96997 * 119.99599 * 179.97438 * 9 8 6 28 28 H 1.07998 * 119.99776 * 0.02562 * 15 14 2 29 29 H 1.07998 * 120.00665 * 180.02562 * 16 15 14 30 30 H 1.08005 * 120.00516 * 179.70850 * 19 17 16 31 31 H 1.08006 * 119.99587 * 180.32216 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5874 -0.5219 3.5559 7 1 2.8371 -1.5699 3.4795 8 6 2.7306 0.1348 4.7598 9 7 2.4270 1.4111 4.8527 10 14 3.3558 -0.7882 6.2587 11 1 4.8367 -0.6951 6.3152 12 1 2.7748 -0.1888 7.4869 13 1 2.9526 -2.2143 6.1656 14 6 2.0324 -0.7104 -1.2305 15 6 2.4587 0.0198 -2.3243 16 6 2.9200 -0.6313 -3.4528 17 6 2.9545 -2.0137 -3.4880 18 35 3.5849 -2.9051 -5.0320 19 6 2.5220 -2.7439 -2.3957 20 6 2.0667 -2.0919 -1.2652 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4496 -1.4980 1.4099 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6162 2.5525 27 1 2.5274 1.8730 5.6997 28 1 2.4320 1.0991 -2.2966 29 1 3.2534 -0.0609 -4.3071 30 1 2.5444 -3.8233 -2.4245 31 1 1.7339 -2.6619 -0.4103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -0.302024 kcal Electronic energy + Delta-G solvation = -14147.555486 eV Core-core repulsion = 11666.771807 eV Total energy + Delta-G solvation = -2480.783679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50961 -37.67167 -34.98900 -33.18198 -31.96908 -31.44289 -29.29181 -27.93727 -24.60730 -24.07517 -23.07826 -21.35734 -18.72994 -17.59083 -16.83124 -16.32927 -16.12659 -15.70486 -15.07267 -14.84862 -14.41327 -14.33000 -14.06890 -13.62822 -13.39162 -13.13239 -12.72838 -12.57117 -12.52510 -12.13816 -11.96325 -11.77751 -11.60986 -11.25374 -11.22261 -10.65758 -9.92462 -9.49355 -9.08367 -8.21638 -6.32192 0.16593 0.41408 0.67149 1.42219 1.43605 1.54572 2.40568 2.68744 3.12154 3.52246 3.87823 3.91077 4.02218 4.23626 4.32360 4.50328 4.52799 4.75207 4.81801 4.86647 5.03580 5.11404 5.19585 5.26151 5.27505 5.40856 5.60286 5.70187 5.89833 6.04011 6.45758 6.72796 6.90543 7.38676 8.89678 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.003402 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.890488 B = 8227.470818 C = 8657.056801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 H 0.069 0.931 4 N -0.680 5.680 5 C 0.211 3.789 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.263 1.263 14 C -0.050 4.050 15 C -0.119 4.119 16 C -0.092 4.092 17 C -0.107 4.107 18 Br -0.051 7.051 19 C -0.094 4.094 20 C -0.101 4.101 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.337 0.663 25 H -0.002 1.002 26 H -0.032 1.032 27 H 0.265 0.735 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -7.601 -20.729 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 H 0.088 0.912 4 N -0.310 5.310 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.795 3.205 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.187 1.187 14 C -0.051 4.051 15 C -0.138 4.138 16 C -0.111 4.111 17 C -0.186 4.186 18 Br 0.034 6.966 19 C -0.114 4.114 20 C -0.121 4.121 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.155 0.845 25 H 0.016 0.984 26 H -0.014 1.014 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.017 -7.710 -21.344 22.694 hybrid contribution -0.753 0.326 1.590 1.789 sum -0.736 -7.384 -19.754 21.102 Atomic orbital electron populations 1.22357 0.95201 1.02689 1.02145 1.20510 0.93644 0.96848 0.88655 0.91247 1.60641 1.56322 1.10047 1.03994 1.19197 0.93227 0.91476 0.87756 1.21555 1.43798 0.97255 0.94699 0.91782 1.25909 0.95599 0.95763 1.02289 1.70085 1.49732 1.10636 1.26927 0.85369 0.78404 0.78896 0.77858 1.20092 1.20754 1.18674 1.20057 0.96447 0.94301 0.94341 1.21222 0.99135 1.00919 0.92500 1.21234 0.98538 0.92348 0.98995 1.21878 1.07129 0.95312 0.94316 1.96665 1.87413 1.77973 1.34563 1.21251 0.97639 1.00790 0.91732 1.21056 0.99342 0.94034 0.97630 0.93760 0.90551 0.91555 0.84543 0.98436 1.01405 0.92667 0.84050 0.83360 0.83818 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 9.14 71.98 0.66 -4.14 16 2 C 0.11 3.81 2.79 44.17 0.12 3.93 16 3 H 0.07 2.49 7.66 -2.39 -0.02 2.47 16 4 N -0.68 -28.00 5.69 -499.45 -2.84 -30.84 16 5 C 0.21 11.03 5.24 85.55 0.45 11.47 16 6 C -0.53 -30.08 9.32 25.60 0.24 -29.84 16 7 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 10 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 14 C -0.05 -1.45 4.96 -19.86 -0.10 -1.55 16 15 C -0.12 -2.96 9.67 22.27 0.22 -2.75 16 16 C -0.09 -2.06 9.79 22.29 0.22 -1.84 16 17 C -0.11 -2.49 6.22 22.31 0.14 -2.35 16 18 Br -0.05 -1.02 33.70 -20.37 -0.69 -1.71 16 19 C -0.09 -2.27 9.79 22.28 0.22 -2.05 16 20 C -0.10 -2.75 9.32 22.26 0.21 -2.54 16 21 H 0.04 1.45 7.45 -2.39 -0.02 1.43 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 24 H 0.34 13.01 7.81 -89.70 -0.70 12.31 16 25 H 0.00 -0.14 8.05 -2.39 -0.02 -0.16 16 26 H -0.03 -1.76 7.44 -2.39 -0.02 -1.78 16 27 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.14 3.06 8.04 -2.91 -0.02 3.04 16 29 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.13 3.49 7.25 -2.91 -0.02 3.47 16 Total: -1.00 -61.69 287.44 2.03 -59.66 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.42 Total: 13.59 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 2.83 Total: -31.05 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.56 Total: -86.46 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.69 Total: -1.71 kcal Total: -61.69 2.03 -59.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.357 kcal (2) G-P(sol) polarization free energy of solvation -61.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds