Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 15 15 C 1.38242 * 119.98655 * 79.72386 * 14 2 1 16 16 C 1.38218 * 120.00593 * 179.76383 * 15 14 2 17 17 C 1.38321 * 119.98948 * 0.51348 * 16 15 14 18 18 Br 1.89106 * 120.01163 * 179.72123 * 17 16 15 19 19 C 1.38322 * 119.98038 * 359.74015 * 17 16 15 20 20 C 1.38214 * 119.99038 * 0.02562 * 19 17 16 21 21 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 22 22 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 27 27 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 28 28 H 1.07998 * 119.99415 * 0.02562 * 15 14 2 29 29 H 1.08002 * 120.00646 * 180.23465 * 16 15 14 30 30 H 1.08004 * 120.00468 * 179.97438 * 19 17 16 31 31 H 1.08005 * 119.99581 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 1 2.8370 -1.5697 -3.4797 8 6 2.7315 0.1353 -4.7596 9 7 2.4280 1.4116 -4.8524 10 14 3.3580 -0.7872 -6.2582 11 1 3.6266 -2.2012 -5.8925 12 1 2.3341 -0.7392 -7.3328 13 1 4.6118 -0.1544 -6.7407 14 6 2.0324 -0.7104 1.2305 15 6 2.0613 -2.0920 1.2672 16 6 2.5265 -2.7440 2.3937 17 6 2.9532 -2.0139 3.4883 18 35 3.5824 -2.9053 5.0328 19 6 2.9191 -0.6315 3.4530 20 6 2.4583 0.0196 2.3243 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 2.5291 1.8737 -5.6993 28 1 1.7243 -2.6620 0.4140 29 1 2.5526 -3.8233 2.4209 30 1 3.2518 -0.0611 4.3077 31 1 2.4320 1.0990 2.2965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = 16.149967 kcal Electronic energy + Delta-G solvation = -14146.878228 eV Core-core repulsion = 11666.807961 eV Total energy + Delta-G solvation = -2480.070267 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41355 -36.20390 -33.08109 -31.85981 -30.95457 -30.02570 -28.13982 -26.04200 -23.23880 -22.81267 -21.49619 -20.10031 -17.00999 -16.11661 -15.44641 -14.97977 -14.64570 -14.18223 -13.65176 -13.52788 -13.31482 -13.17757 -12.37013 -12.22156 -11.86186 -11.42351 -11.36162 -11.09283 -10.81706 -10.68000 -10.62979 -10.49669 -10.30654 -9.94288 -9.22850 -8.91293 -8.54436 -8.41693 -7.38166 -6.07074 -4.08964 1.22033 1.42962 1.63942 3.28946 3.36552 3.41398 3.74429 4.40136 4.80465 4.95328 4.97639 5.25276 5.29595 5.44328 5.53031 5.57763 5.62716 5.83425 5.97150 6.04869 6.20281 6.27784 6.33075 6.47534 6.79034 6.94155 7.18636 7.36628 7.74003 8.07218 8.30427 8.53437 9.00184 9.56224 11.03999 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.036651 B = 0.003402 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.784455 B = 8227.946238 C = 8657.453999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 H 0.083 0.917 4 N -0.681 5.681 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.034 4.034 15 C -0.092 4.092 16 C -0.093 4.093 17 C -0.101 4.101 18 Br -0.068 7.068 19 C -0.093 4.093 20 C -0.115 4.115 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.330 0.670 25 H -0.011 1.011 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -6.390 19.819 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.002 3.998 3 H 0.102 0.898 4 N -0.310 5.310 5 C 0.068 3.932 6 C -0.553 4.553 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.035 4.035 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.180 4.180 18 Br 0.017 6.983 19 C -0.113 4.113 20 C -0.135 4.135 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.147 0.853 25 H 0.007 0.993 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.300 -6.487 20.410 21.418 hybrid contribution -0.671 -0.037 -1.441 1.590 sum -0.971 -6.524 18.969 20.083 Atomic orbital electron populations 1.22465 0.96752 1.01946 1.02101 1.20523 0.92300 0.97649 0.89372 0.89836 1.60793 1.55198 1.10504 1.04553 1.19599 0.95424 0.91763 0.86420 1.21209 1.43576 0.96976 0.93533 0.91902 1.24983 0.95591 0.94924 0.99037 1.69970 1.48867 1.08996 1.25864 0.86432 0.78447 0.80014 0.82467 1.19640 1.21086 1.20985 1.20217 0.94721 0.93882 0.94691 1.21003 0.98768 0.94264 0.97061 1.21075 0.98148 0.99889 0.92154 1.21651 1.07745 0.94896 0.93711 1.96646 1.87715 1.78285 1.35682 1.20985 0.99331 0.92212 0.98745 1.21046 0.99592 1.00137 0.92685 0.91716 0.92657 0.92804 0.85293 0.99277 0.95384 0.92942 0.84994 0.85436 0.85491 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.14 37.16 0.34 -2.21 16 2 C 0.11 1.87 2.79 -68.86 -0.19 1.68 16 3 H 0.08 1.45 7.66 -51.93 -0.40 1.06 16 4 N -0.68 -13.79 5.70 -109.21 -0.62 -14.41 16 5 C 0.19 4.90 5.24 -4.98 -0.03 4.88 16 6 C -0.51 -14.27 9.32 -34.44 -0.32 -14.59 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 C -0.03 -0.50 4.95 -104.62 -0.52 -1.02 16 15 C -0.09 -1.30 9.32 -39.59 -0.37 -1.66 16 16 C -0.09 -1.20 9.79 -39.56 -0.39 -1.59 16 17 C -0.10 -1.28 6.22 -39.52 -0.25 -1.53 16 18 Br -0.07 -0.76 33.70 -68.01 -2.29 -3.05 16 19 C -0.09 -1.15 9.79 -39.56 -0.39 -1.54 16 20 C -0.12 -1.53 9.67 -39.59 -0.38 -1.91 16 21 H 0.06 1.04 7.45 -51.93 -0.39 0.65 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.33 6.33 7.81 -39.29 -0.31 6.02 16 25 H -0.01 -0.28 7.44 -51.93 -0.39 -0.67 16 26 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.13 1.80 7.25 -52.49 -0.38 1.42 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 31 H 0.13 1.48 8.04 -52.48 -0.42 1.06 16 LS Contribution 287.45 15.07 4.33 4.33 Total: -1.00 -29.02 287.45 -9.39 -38.41 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.93 Total: 1.98 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.59 Total: -18.01 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.11 Total: -40.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.02 -9.39 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.561 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds