Wall clock time and date at job start Tue Mar 31 2020 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00377 * 2 1 4 4 H 1.48500 * 109.47637 * 240.00375 * 3 2 1 5 5 H 1.48507 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47285 * 120.00028 * 3 2 1 7 7 C 1.37882 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99501 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99984 * 180.02562 * 10 9 7 12 12 O 1.21557 * 120.00501 * 359.97438 * 11 10 9 13 13 C 1.47787 * 119.99946 * 179.97438 * 11 10 9 14 14 C 1.39618 * 120.15157 * 0.02562 * 13 11 10 15 15 C 1.37915 * 119.86294 * 179.97438 * 14 13 11 16 16 C 1.38406 * 120.17360 * 0.02562 * 15 14 13 17 17 C 1.38287 * 120.31048 * 359.97438 * 16 15 14 18 18 C 1.38112 * 120.13538 * 359.97438 * 17 16 15 19 19 Br 1.89100 * 120.08863 * 180.02562 * 18 17 16 20 20 H 0.97001 * 119.99487 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47206 * 60.00133 * 9 7 2 22 22 H 1.08997 * 109.47421 * 300.00070 * 9 7 2 23 23 H 0.97001 * 119.99392 * 359.97438 * 10 9 7 24 24 H 1.07997 * 120.07084 * 0.25050 * 14 13 11 25 25 H 1.07997 * 119.90999 * 179.97438 * 15 14 13 26 26 H 1.08004 * 119.84721 * 179.97438 * 16 15 14 27 27 H 1.08004 * 119.93120 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6128 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5585 -5.1055 -0.0017 13 6 2.7140 -6.0067 -0.0043 14 6 4.0873 -5.7553 -0.0047 15 6 4.9782 -6.8081 -0.0059 16 6 4.5141 -8.1121 -0.0072 17 6 3.1554 -8.3693 -0.0068 18 6 2.2519 -7.3247 -0.0046 19 35 0.3942 -7.6780 -0.0033 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 3.1566 -3.4355 -0.0028 24 1 4.4513 -4.7385 0.0004 25 1 6.0406 -6.6145 -0.0066 26 1 5.2165 -8.9325 -0.0085 27 1 2.8000 -9.3892 -0.0074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034505808.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:35 Heat of formation + Delta-G solvation = -23.042981 kcal Electronic energy + Delta-G solvation = -14007.857395 eV Core-core repulsion = 11390.254500 eV Total energy + Delta-G solvation = -2617.602895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11391 -39.20602 -36.21427 -34.47054 -33.19519 -32.36011 -30.21260 -29.17152 -25.50377 -24.14191 -23.00680 -21.47670 -19.54910 -18.07805 -17.18148 -16.81564 -16.36652 -16.19606 -15.78401 -15.50890 -14.62698 -14.41394 -14.37749 -13.96414 -13.58847 -12.96977 -12.71640 -12.67681 -12.26386 -12.19080 -11.80483 -11.71483 -11.48904 -10.79260 -10.13507 -9.90187 -9.86333 -9.64136 -8.29072 -6.46171 -0.27004 0.17225 0.74528 1.43044 1.47448 1.55551 1.93065 2.29476 2.51988 2.76414 3.05854 3.70472 3.79044 4.05390 4.30988 4.36899 4.52410 4.82104 5.06076 5.16338 5.23680 5.24359 5.36626 5.45913 5.66702 5.79495 5.83402 6.63319 6.85481 7.22030 7.42435 8.82960 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.005063 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.975595 B = 5528.806410 C = 6516.638993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.701 5.701 11 C 0.521 3.479 12 O -0.562 6.562 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.103 4.103 16 C -0.079 4.079 17 C -0.103 4.103 18 C -0.068 4.068 19 Br -0.044 7.044 20 H 0.269 0.731 21 H -0.011 1.011 22 H -0.011 1.011 23 H 0.405 0.595 24 H 0.147 0.853 25 H 0.174 0.826 26 H 0.179 0.821 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.919 -18.068 -0.017 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.351 5.351 11 C 0.308 3.692 12 O -0.442 6.442 13 C -0.138 4.138 14 C -0.105 4.105 15 C -0.121 4.121 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.149 4.149 19 Br 0.043 6.957 20 H 0.078 0.922 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.241 0.759 24 H 0.164 0.836 25 H 0.192 0.808 26 H 0.196 0.804 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.183 -18.212 -0.015 21.371 hybrid contribution 0.200 1.231 0.000 1.247 sum 11.382 -16.980 -0.015 20.443 Atomic orbital electron populations 1.70140 1.08317 1.28648 1.49803 1.26078 0.95774 1.03926 0.93781 0.85196 0.77913 0.76487 0.79562 1.18548 1.21149 1.18559 1.21576 0.94320 0.90481 1.53172 0.89738 1.18551 0.88556 0.83961 0.94211 1.46133 1.11175 1.05200 1.72627 1.18950 0.88751 0.84019 0.77494 1.90884 1.17657 1.84562 1.51114 1.19848 0.95026 0.92050 1.06861 1.21656 0.90181 1.01967 0.96666 1.21706 1.01580 0.91660 0.97167 1.21871 0.94477 0.98463 0.94934 1.21447 0.93252 0.98292 0.99244 1.22220 0.92017 0.95167 1.05503 1.96718 1.07889 1.94042 1.97062 0.92237 0.99325 0.99312 0.75860 0.83579 0.80821 0.80391 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.42 15 2 C 0.00 0.23 5.46 84.66 0.46 0.69 15 3 Si 0.99 42.34 29.54 68.60 2.03 44.37 15 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 7 C -0.56 -30.60 9.28 25.60 0.24 -30.36 15 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 15 9 C 0.27 15.15 5.43 85.63 0.46 15.61 15 10 N -0.70 -31.07 5.50 -469.76 -2.58 -33.66 15 11 C 0.52 22.69 7.76 86.77 0.67 23.37 15 12 O -0.56 -28.73 13.48 -3.90 -0.05 -28.78 15 13 C -0.13 -4.34 5.88 -20.07 -0.12 -4.46 15 14 C -0.09 -1.98 9.54 22.53 0.21 -1.76 15 15 C -0.10 -1.54 10.03 22.23 0.22 -1.32 15 16 C -0.08 -1.07 10.04 22.32 0.22 -0.85 15 17 C -0.10 -2.05 9.78 22.25 0.22 -1.83 15 18 C -0.07 -2.04 6.26 22.58 0.14 -1.90 15 19 Br -0.04 -1.49 30.40 -20.37 -0.62 -2.11 15 20 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 21 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 22 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 23 H 0.40 14.74 6.36 -92.71 -0.59 14.15 15 24 H 0.15 2.97 6.41 -2.91 -0.02 2.96 15 25 H 0.17 1.24 8.06 -2.91 -0.02 1.21 15 26 H 0.18 0.89 8.06 -2.91 -0.02 0.87 15 27 H 0.16 2.37 8.06 -2.91 -0.02 2.35 15 Total: -1.00 -74.31 262.08 2.41 -71.91 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.61 Total: 7.50 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 2.74 Total: -2.81 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -2.30 Total: -90.08 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -0.62 Total: -2.11 kcal Total: -74.31 2.41 -71.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034505808.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.862 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds