Wall clock time and date at job start Tue Mar 31 2020 05:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48499 * 109.47258 * 240.00227 * 3 2 1 5 5 H 1.48494 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46795 * 119.99942 * 3 2 1 7 7 C 1.38949 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99795 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00368 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00347 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00280 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.47090 * 180.02562 * 12 10 9 14 14 C 1.35617 * 116.99850 * 179.97438 * 13 12 10 15 15 C 1.38683 * 120.15889 * 0.31910 * 14 13 12 16 16 C 1.38044 * 120.12889 * 180.25695 * 15 14 13 17 17 C 1.38729 * 120.44031 * 359.43711 * 16 15 14 18 18 Cl 1.73594 * 119.84369 * 180.27971 * 17 16 15 19 19 C 1.37783 * 120.30972 * 0.26226 * 17 16 15 20 20 C 1.40016 * 119.86765 * 0.02562 * 19 17 16 21 21 C 1.46790 * 120.21932 * 180.02562 * 20 19 17 22 22 O 1.21293 * 120.00393 * 179.97438 * 21 20 19 23 23 H 0.96999 * 119.99989 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00006 * 0.02562 * 9 7 2 25 25 H 1.08992 * 109.47272 * 60.00176 * 12 10 9 26 26 H 1.09006 * 109.46549 * 299.99829 * 12 10 9 27 27 H 1.08008 * 119.93662 * 359.97265 * 15 14 13 28 28 H 1.08002 * 119.78410 * 179.72497 * 16 15 14 29 29 H 1.07998 * 120.06599 * 179.97438 * 19 17 16 30 30 H 1.08007 * 119.99424 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0887 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 8 2.1721 -5.9492 -0.0004 14 6 1.6537 -7.2024 -0.0003 15 6 0.2794 -7.3878 -0.0075 16 6 -0.2477 -8.6637 -0.0020 17 6 0.5894 -9.7700 -0.0010 18 17 -0.0900 -11.3674 -0.0014 19 6 1.9575 -9.6067 0.0000 20 6 2.5060 -8.3185 0.0005 21 6 3.9625 -8.1356 0.0010 22 8 4.4335 -7.0178 0.0009 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3907 -0.0005 25 1 0.6173 -4.9206 -0.8913 26 1 0.6165 -4.9209 0.8887 27 1 -0.3800 -6.5324 -0.0128 28 1 -1.3189 -8.8017 -0.0032 29 1 2.6055 -10.4707 0.0012 30 1 4.6148 -8.9965 0.0013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036894941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:34 Heat of formation + Delta-G solvation = -83.959125 kcal Electronic energy + Delta-G solvation = -18856.777185 eV Core-core repulsion = 15450.960454 eV Total energy + Delta-G solvation = -3405.816732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57848 -38.64461 -38.06695 -37.37000 -36.27271 -34.00205 -31.85156 -31.36584 -30.13816 -28.12791 -24.93071 -24.74047 -22.59392 -21.19758 -19.52419 -18.32696 -17.97288 -17.03841 -16.46155 -16.03456 -15.84290 -15.02264 -14.94724 -14.56523 -14.25429 -14.12368 -13.97191 -13.36426 -13.31549 -13.06094 -12.59168 -12.25011 -11.69187 -11.60795 -11.53804 -11.21720 -11.10156 -10.68054 -10.48217 -10.28993 -9.58855 -9.58536 -9.39471 -8.48975 -8.29201 -8.07078 -6.49895 -3.91363 0.47095 1.00000 1.89953 2.42555 2.99835 3.16300 3.23145 3.29746 3.49414 3.73920 4.11290 4.14418 4.42319 4.64721 4.78989 4.87688 5.11994 5.14342 5.25993 5.27583 5.45672 5.56156 5.65167 5.86966 5.94845 6.07356 6.25267 7.29190 7.48520 7.62052 7.94500 8.49856 9.08469 9.39578 9.90834 10.67549 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.033964 B = 0.003351 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.203912 B = 8354.878602 C = 9163.936353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.301 4.301 8 H 0.105 0.895 9 N -0.555 5.555 10 C 0.439 3.561 11 O -0.562 6.562 12 C 0.041 3.959 13 O -0.248 6.248 14 C 0.197 3.803 15 C -0.217 4.217 16 C -0.036 4.036 17 C -0.097 4.097 18 Cl -0.073 7.073 19 C -0.023 4.023 20 C -0.217 4.217 21 C 0.366 3.634 22 O -0.415 6.415 23 H 0.274 0.726 24 H 0.393 0.607 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -20.105 -0.007 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.193 5.193 10 C 0.223 3.777 11 O -0.445 6.445 12 C -0.037 4.037 13 O -0.156 6.156 14 C 0.147 3.853 15 C -0.236 4.236 16 C -0.055 4.055 17 C -0.124 4.124 18 Cl -0.045 7.045 19 C -0.042 4.042 20 C -0.219 4.219 21 C 0.221 3.779 22 O -0.284 6.284 23 H 0.084 0.916 24 H 0.227 0.773 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.164 0.836 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.503 -19.358 -0.007 19.519 hybrid contribution -0.883 0.534 0.002 1.032 sum -3.386 -18.823 -0.005 19.125 Atomic orbital electron populations 1.69597 1.05973 1.28521 1.50018 1.25281 0.95685 0.99796 0.96952 0.85863 0.78760 0.80081 0.79246 1.19746 1.20880 1.19753 1.19683 0.93482 0.81776 1.48071 0.87700 1.41671 1.09189 1.04030 1.64439 1.19224 0.88421 0.83897 0.86113 1.90629 1.13233 1.86468 1.54128 1.22724 0.92026 0.86567 1.02425 1.86427 1.34065 1.10502 1.84628 1.19583 0.91417 0.85690 0.88586 1.21356 0.94036 0.98515 1.09645 1.21029 1.00213 0.90367 0.93880 1.20575 0.93287 0.86291 1.12243 1.98361 1.85320 1.23413 1.97391 1.21038 0.93184 0.96152 0.93843 1.20417 0.97122 0.90760 1.13586 1.23703 0.88044 0.92978 0.73174 1.90765 1.77668 1.28512 1.31438 0.91643 0.77333 0.90030 0.90036 0.83645 0.84332 0.83576 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 10 C 0.44 10.67 7.86 -10.99 -0.09 10.58 16 11 O -0.56 -16.34 16.08 -14.37 -0.23 -16.57 16 12 C 0.04 0.74 5.22 36.00 0.19 0.93 16 13 O -0.25 -4.74 7.74 -48.82 -0.38 -5.11 16 14 C 0.20 2.91 6.71 -38.59 -0.26 2.65 16 15 C -0.22 -2.51 9.03 -39.49 -0.36 -2.87 16 16 C -0.04 -0.35 9.81 -39.47 -0.39 -0.74 16 17 C -0.10 -0.94 6.31 -39.57 -0.25 -1.19 16 18 Cl -0.07 -0.64 28.94 -51.86 -1.50 -2.14 16 19 C -0.02 -0.22 9.57 -39.08 -0.37 -0.59 16 20 C -0.22 -2.73 5.88 -104.95 -0.62 -3.35 16 21 C 0.37 4.78 11.44 34.19 0.39 5.17 16 22 O -0.41 -8.01 15.98 -16.37 -0.26 -8.27 16 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 25 H 0.08 1.21 7.65 -51.93 -0.40 0.82 16 26 H 0.08 1.21 7.67 -51.93 -0.40 0.82 16 27 H 0.15 1.46 6.30 -52.48 -0.33 1.13 16 28 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.10 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 294.10 15.07 4.43 4.43 Total: -1.00 -34.65 294.10 -6.51 -41.17 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.23 Total: 5.26 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.99 Total: 2.64 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.67 Total: -37.26 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.87 Total: -29.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.65 -6.51 -41.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036894941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.794 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds