Wall clock time and date at job start Tue Mar 31 2020 05:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48501 * 109.47281 * 270.00054 * 3 2 1 5 5 H 1.48507 * 109.47069 * 29.99900 * 3 2 1 6 6 H 1.48503 * 109.47491 * 149.99758 * 3 2 1 7 7 C 1.37876 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47330 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99942 * 179.97438 * 10 9 7 12 12 O 1.21548 * 119.99865 * 0.02562 * 11 10 9 13 13 C 1.47848 * 119.99448 * 180.02562 * 11 10 9 14 14 C 1.39592 * 120.14275 * 359.97438 * 13 11 10 15 15 C 1.37946 * 119.87246 * 180.02562 * 14 13 11 16 16 C 1.38364 * 120.15601 * 359.97438 * 15 14 13 17 17 C 1.38421 * 120.28257 * 359.97438 * 16 15 14 18 18 Br 1.89106 * 119.93709 * 180.02562 * 17 16 15 19 19 C 1.38068 * 120.12391 * 0.02562 * 17 16 15 20 20 H 0.96997 * 119.99698 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47423 * 59.99576 * 9 7 2 22 22 H 1.08996 * 109.47184 * 299.99873 * 9 7 2 23 23 H 0.96998 * 119.99464 * 0.02562 * 10 9 7 24 24 H 1.08002 * 120.06375 * 359.97438 * 14 13 11 25 25 H 1.08000 * 119.92211 * 180.02562 * 15 14 13 26 26 H 1.07998 * 119.85745 * 179.97438 * 16 15 14 27 27 H 1.08011 * 120.07624 * 180.27479 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5588 -5.1054 0.0011 13 6 2.7147 -6.0071 0.0016 14 6 4.0877 -5.7553 0.0011 15 6 4.9792 -6.8080 0.0011 16 6 4.5155 -8.1116 0.0022 17 6 3.1554 -8.3686 0.0038 18 35 2.5324 -10.1541 0.0060 19 6 2.2528 -7.3239 0.0038 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 4.4513 -4.7383 -0.0002 25 1 6.0417 -6.6141 0.0011 26 1 5.2178 -8.9321 0.0017 27 1 1.1916 -7.5253 0.0095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037493712.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:15 Heat of formation + Delta-G solvation = -17.629946 kcal Electronic energy + Delta-G solvation = -13760.243906 eV Core-core repulsion = 11142.875738 eV Total energy + Delta-G solvation = -2617.368168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87256 -37.98283 -34.36767 -32.80988 -32.15269 -31.23544 -29.39327 -27.30559 -24.12184 -22.53274 -22.12549 -19.84060 -18.08714 -16.51826 -15.84077 -15.59140 -14.83543 -14.63672 -14.54820 -14.06134 -13.71092 -13.21228 -12.91069 -12.03578 -11.89357 -11.87217 -11.32023 -11.02806 -11.00004 -10.90800 -10.46700 -10.36520 -9.46088 -9.29879 -9.13060 -8.89508 -8.79002 -7.97733 -6.20901 -4.28446 0.73867 1.04571 1.44285 3.04840 3.21671 3.27810 3.30020 3.89380 3.96399 4.31266 4.65021 4.75762 4.99359 5.12443 5.15394 5.23016 5.50899 5.70576 6.00237 6.13213 6.19401 6.56066 7.23368 7.30307 7.44922 7.59348 7.90901 8.49906 8.69675 8.95398 9.37988 10.89241 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.052202 B = 0.003443 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.251343 B = 8130.777173 C = 8651.883928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.702 5.702 11 C 0.538 3.462 12 O -0.547 6.547 13 C -0.114 4.114 14 C -0.074 4.074 15 C -0.121 4.121 16 C -0.077 4.077 17 C -0.100 4.100 18 Br -0.052 7.052 19 C -0.038 4.038 20 H 0.267 0.733 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.390 0.610 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 -18.822 0.014 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.350 5.350 11 C 0.323 3.677 12 O -0.427 6.427 13 C -0.118 4.118 14 C -0.093 4.093 15 C -0.140 4.140 16 C -0.097 4.097 17 C -0.179 4.179 18 Br 0.034 6.966 19 C -0.059 4.059 20 H 0.076 0.924 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.224 0.776 24 H 0.154 0.846 25 H 0.155 0.845 26 H 0.152 0.848 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.635 -19.463 0.019 21.718 hybrid contribution 1.032 1.420 -0.010 1.756 sum 10.666 -18.043 0.010 20.960 Atomic orbital electron populations 1.69970 1.06114 1.27407 1.48625 1.24953 0.94936 0.99493 0.94610 0.86397 0.79599 0.82554 0.78248 1.20425 1.20957 1.19735 1.21193 0.93255 0.90349 1.53574 0.91855 1.19190 0.88247 0.81701 0.98053 1.46436 1.11342 1.05880 1.71351 1.18146 0.87893 0.83242 0.78420 1.90748 1.16057 1.84814 1.51084 1.20326 0.94015 0.94129 1.03312 1.21587 0.92181 1.00173 0.95362 1.21113 1.00228 0.91682 1.00967 1.21244 0.93421 0.97772 0.97307 1.21690 0.95553 0.90972 1.09714 1.96707 1.89145 1.12971 1.97815 1.21263 1.00538 0.90208 0.93847 0.92363 0.95199 0.95182 0.77561 0.84569 0.84545 0.84829 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -25.00 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 7 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 15 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 15 10 N -0.70 -14.64 5.50 -62.43 -0.34 -14.98 15 11 C 0.54 10.96 7.77 -12.33 -0.10 10.86 15 12 O -0.55 -13.27 16.35 5.32 0.09 -13.18 15 13 C -0.11 -1.78 5.87 -104.97 -0.62 -2.40 15 14 C -0.07 -0.91 9.54 -39.18 -0.37 -1.28 15 15 C -0.12 -1.20 10.03 -39.64 -0.40 -1.59 15 16 C -0.08 -0.79 9.78 -39.47 -0.39 -1.17 15 17 C -0.10 -1.22 6.22 -39.58 -0.25 -1.47 15 18 Br -0.05 -0.56 33.69 -68.01 -2.29 -2.85 15 19 C -0.04 -0.56 9.33 -39.16 -0.37 -0.92 15 20 H 0.27 7.27 8.31 -40.82 -0.34 6.94 15 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 23 H 0.39 6.83 6.36 -40.82 -0.26 6.57 15 24 H 0.14 1.45 6.40 -52.49 -0.34 1.12 15 25 H 0.14 0.93 8.06 -52.49 -0.42 0.51 15 26 H 0.13 1.03 8.06 -52.49 -0.42 0.61 15 27 H 0.15 2.24 7.65 -52.48 -0.40 1.84 15 LS Contribution 267.11 15.07 4.03 4.03 Total: -1.00 -31.04 267.11 -7.95 -39.00 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -2.22 Total: 2.19 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.93 Total: -4.69 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.39 Total: -39.98 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.04 -7.95 -39.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037493712.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.366 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds