Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37912 * 120.06918 * 2 1 4 4 C 1.38473 * 120.13734 * 179.97438 * 3 2 1 5 5 Br 1.89106 * 119.85713 * 180.02562 * 4 3 2 6 6 C 1.38509 * 120.28763 * 0.02562 * 4 3 2 7 7 C 1.37872 * 120.13935 * 359.95973 * 6 4 3 8 8 C 1.39657 * 120.07509 * 179.97438 * 2 1 3 9 9 C 1.47682 * 120.13842 * 359.73929 * 8 2 1 10 10 O 1.21600 * 119.99908 * 354.00690 * 9 8 2 11 11 N 1.34771 * 120.00294 * 174.00164 * 9 8 2 12 12 C 1.36881 * 120.00488 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99612 * 0.02562 * 12 11 9 14 14 C 1.39036 * 120.00388 * 179.97438 * 12 11 9 15 15 N 1.31369 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99826 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47405 * 89.99967 * 16 14 12 18 18 H 1.48506 * 109.47062 * 209.99832 * 16 14 12 19 19 H 1.48503 * 109.47405 * 329.99578 * 16 14 12 20 20 H 1.09002 * 109.46972 * 263.48046 * 1 2 3 21 21 H 1.08996 * 109.47286 * 23.48688 * 1 2 3 22 22 H 1.08997 * 109.47269 * 143.48635 * 1 2 3 23 23 H 1.07997 * 119.93249 * 359.95847 * 3 2 1 24 24 H 1.08001 * 119.93055 * 180.02562 * 6 4 3 25 25 H 1.08009 * 120.07046 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00009 * 359.97438 * 11 9 8 27 27 H 0.96999 * 119.99923 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1935 0.0000 4 6 3.5827 1.1952 0.0005 5 35 4.5222 2.8363 0.0013 6 6 4.2827 0.0000 0.0005 7 6 3.6037 -1.2000 0.0008 8 6 2.2069 -1.2085 0.0005 9 6 1.4732 -2.4902 0.0069 10 8 0.2627 -2.4973 0.1217 11 7 2.1453 -3.6521 -0.1145 12 6 1.4654 -4.8400 -0.1091 13 1 0.3902 -4.8462 -0.0080 14 6 2.1587 -6.0386 -0.2350 15 7 1.5060 -7.1786 -0.2303 16 14 4.0184 -6.0277 -0.4106 17 1 4.6432 -6.0947 0.9349 18 1 4.4466 -7.2010 -1.2141 19 1 4.4440 -4.7790 -1.0925 20 1 -0.3633 -0.1167 1.0210 21 1 -0.3633 0.9425 -0.4095 22 1 -0.3634 -0.8259 -0.6115 23 1 1.6580 2.1288 -0.0007 24 1 5.3627 0.0080 0.0014 25 1 4.1507 -2.1313 0.0013 26 1 3.1110 -3.6464 -0.2065 27 1 1.9898 -8.0148 -0.3177 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = -27.388681 kcal Electronic energy + Delta-G solvation = -14244.836738 eV Core-core repulsion = 11627.045399 eV Total energy + Delta-G solvation = -2617.791339 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24638 -39.24722 -36.30821 -34.14399 -33.89509 -32.87901 -30.59434 -28.36210 -26.80371 -24.23213 -22.63497 -21.43976 -20.46176 -18.33941 -17.21313 -16.55304 -16.34958 -15.99958 -15.78312 -15.27452 -14.58386 -14.45947 -14.23899 -14.16694 -13.44999 -13.10790 -12.95828 -12.79775 -12.51526 -12.23258 -11.99872 -11.76584 -11.58113 -11.29507 -10.37373 -10.30051 -9.92970 -9.68825 -8.50745 -6.07683 -0.35679 0.23585 0.52610 1.25820 1.32108 1.39957 1.86460 2.16220 2.65023 2.74907 3.17867 3.66948 3.79133 3.92100 4.15442 4.29172 4.42183 4.73817 4.81661 4.86447 5.05779 5.07618 5.22263 5.46356 5.55056 5.69639 5.90587 6.47468 6.76219 7.25798 7.81530 8.65635 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.004810 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.078640 B = 5819.840938 C = 6698.931685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.040 4.040 3 C -0.093 4.093 4 C -0.079 4.079 5 Br -0.032 7.032 6 C -0.095 4.095 7 C -0.095 4.095 8 C -0.117 4.117 9 C 0.476 3.524 10 O -0.606 6.606 11 N -0.571 5.571 12 C -0.329 4.329 13 H 0.064 0.936 14 C -0.008 4.008 15 N -0.919 5.919 16 Si 0.954 3.046 17 H -0.251 1.251 18 H -0.268 1.268 19 H -0.233 1.233 20 H 0.066 0.934 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.159 0.841 24 H 0.165 0.835 25 H 0.142 0.858 26 H 0.388 0.612 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.184 20.762 -0.256 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.043 4.043 3 C -0.113 4.113 4 C -0.159 4.159 5 Br 0.054 6.946 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.121 4.121 9 C 0.266 3.734 10 O -0.493 6.493 11 N -0.210 5.210 12 C -0.458 4.458 13 H 0.082 0.918 14 C -0.209 4.209 15 N -0.558 5.558 16 Si 0.773 3.227 17 H -0.175 1.175 18 H -0.193 1.193 19 H -0.156 1.156 20 H 0.084 0.916 21 H 0.104 0.896 22 H 0.086 0.914 23 H 0.177 0.823 24 H 0.182 0.818 25 H 0.160 0.840 26 H 0.225 0.775 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.728 21.103 -0.193 24.143 hybrid contribution 0.268 -1.229 -0.053 1.259 sum 11.996 19.874 -0.246 23.215 Atomic orbital electron populations 1.20940 0.89867 1.03079 1.02954 1.20121 0.97276 0.91167 0.95701 1.21133 0.92242 0.98186 0.99734 1.22087 0.94783 0.92651 1.06382 1.96714 1.74921 1.25418 1.97584 1.21241 1.01537 0.89610 0.99020 1.21475 0.92168 0.99534 0.98278 1.20081 0.94537 0.92927 1.04553 1.18378 0.87381 0.84137 0.83479 1.90580 1.15351 1.87222 1.56164 1.41981 1.08968 1.05259 1.64813 1.19085 0.93796 0.83297 1.49670 0.91768 1.26120 1.05443 0.93588 0.95699 1.69755 1.39256 0.98664 1.48162 0.85523 0.76435 0.80405 0.80318 1.17537 1.19271 1.15627 0.91571 0.89604 0.91421 0.82323 0.81786 0.84044 0.77538 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 8.73 71.24 0.62 -3.00 15 2 C -0.04 -1.28 5.91 -19.60 -0.12 -1.40 15 3 C -0.09 -2.29 9.40 22.25 0.21 -2.08 15 4 C -0.08 -1.79 6.23 22.39 0.14 -1.65 15 5 Br -0.03 -0.58 33.69 -20.37 -0.69 -1.27 15 6 C -0.09 -2.15 9.77 22.25 0.22 -1.93 15 7 C -0.09 -2.69 9.53 22.53 0.21 -2.48 15 8 C -0.12 -4.24 5.87 -20.09 -0.12 -4.36 15 9 C 0.48 22.55 7.65 86.74 0.66 23.21 15 10 O -0.61 -33.24 12.92 -4.03 -0.05 -33.29 15 11 N -0.57 -27.50 5.03 -309.78 -1.56 -29.06 15 12 C -0.33 -19.10 10.16 84.10 0.85 -18.24 15 13 H 0.06 4.38 7.38 -2.91 -0.02 4.36 15 14 C -0.01 -0.43 5.50 84.95 0.47 0.04 15 15 N -0.92 -53.96 13.95 21.68 0.30 -53.66 15 16 Si 0.95 37.59 27.74 68.60 1.90 39.49 15 17 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 18 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 19 H -0.23 -7.79 6.52 99.48 0.65 -7.14 15 20 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.09 2.08 8.04 -2.39 -0.02 2.06 15 22 H 0.07 2.71 5.86 -2.39 -0.01 2.70 15 23 H 0.16 3.04 8.06 -2.91 -0.02 3.01 15 24 H 0.16 2.70 8.06 -2.91 -0.02 2.67 15 25 H 0.14 3.61 6.45 -2.91 -0.02 3.59 15 26 H 0.39 15.63 3.83 -92.71 -0.35 15.28 15 27 H 0.28 15.11 8.31 -92.71 -0.77 14.33 15 Total: -1.00 -68.75 256.94 3.86 -64.89 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.80 Total: 24.79 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.15 Total: -11.90 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.26 Total: -82.72 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.05 Total: -33.29 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.90 Total: 39.49 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.69 Total: -1.27 kcal Total: -68.75 3.86 -64.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.499 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds